Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46906 * 109.47364 * 2 1 4 4 C 1.46836 * 111.00225 * 170.00225 * 3 2 1 5 5 C 1.53041 * 109.52377 * 185.84177 * 4 3 2 6 6 C 1.53121 * 109.27703 * 300.81808 * 5 4 3 7 7 C 1.52996 * 109.52114 * 177.55475 * 6 5 4 8 8 C 1.52999 * 109.47101 * 175.12565 * 7 6 5 9 9 N 1.46898 * 109.47314 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00204 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47205 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47118 * 55.00481 * 11 10 9 13 13 C 1.53001 * 109.47328 * 294.99944 * 11 10 9 14 14 C 1.52999 * 109.47200 * 175.00159 * 11 10 9 15 15 C 1.50702 * 109.47522 * 185.00185 * 14 11 10 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 11 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 C 1.53123 * 109.20716 * 57.62538 * 6 5 4 24 24 C 1.46847 * 111.00013 * 294.21492 * 3 2 1 25 25 H 1.09000 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47108 * 299.99671 * 1 2 3 27 27 H 1.08999 * 109.47890 * 59.99745 * 1 2 3 28 28 H 1.09001 * 109.47108 * 240.00329 * 2 1 3 29 29 H 1.08999 * 109.47890 * 120.00255 * 2 1 3 30 30 H 1.08999 * 109.46559 * 65.82371 * 4 3 2 31 31 H 1.09004 * 109.46695 * 305.85866 * 4 3 2 32 32 H 1.09000 * 109.50331 * 180.87819 * 5 4 3 33 33 H 1.08998 * 109.50162 * 60.76650 * 5 4 3 34 34 H 1.08995 * 109.52097 * 297.68578 * 6 5 4 35 35 H 1.09006 * 109.47043 * 55.13109 * 7 6 5 36 36 H 1.09000 * 109.47840 * 295.13077 * 7 6 5 37 37 H 1.08999 * 109.46906 * 60.01006 * 8 7 6 38 38 H 1.09000 * 109.47603 * 300.00562 * 8 7 6 39 39 H 1.00893 * 111.00353 * 303.96214 * 9 8 7 40 40 H 1.08995 * 109.47120 * 60.00507 * 10 9 8 41 41 H 1.08999 * 109.47423 * 300.00649 * 10 9 8 42 42 H 1.08994 * 109.47129 * 300.00358 * 13 11 10 43 43 H 1.09008 * 109.46596 * 59.99947 * 13 11 10 44 44 H 1.08998 * 109.47607 * 179.97438 * 13 11 10 45 45 H 1.09000 * 109.47527 * 64.99784 * 14 11 10 46 46 H 1.09001 * 109.47054 * 304.99874 * 14 11 10 47 47 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 48 48 H 1.08998 * 109.50913 * 62.31753 * 23 6 5 49 49 H 1.09010 * 109.49892 * 182.43298 * 23 6 5 50 50 H 1.08996 * 109.46120 * 294.17389 * 24 3 2 51 51 H 1.09000 * 109.46146 * 54.14917 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4679 1.4311 0.2380 5 6 3.9174 2.8875 0.3762 6 6 3.5675 3.6483 -0.9057 7 6 3.9592 5.1191 -0.7504 8 6 3.7221 5.8524 -2.0721 9 7 4.0988 7.2644 -1.9232 10 6 3.8835 8.0016 -3.1754 11 6 4.2867 9.4648 -2.9817 12 1 5.3137 9.5137 -2.6197 13 6 3.3542 10.1199 -1.9608 14 6 4.1809 10.2041 -4.3170 15 6 4.6941 11.6116 -4.1541 16 1 5.0589 11.9456 -3.1939 17 6 4.6971 12.4732 -5.2304 18 7 5.1399 13.7033 -5.0868 19 14 4.0655 11.8959 -6.8909 20 1 5.1878 11.3192 -7.6739 21 1 3.0191 10.8615 -6.6900 22 1 3.4877 13.0478 -7.6286 23 6 2.0608 3.5441 -1.1581 24 6 1.6650 2.0686 -1.2503 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.9886 0.9683 -0.6003 31 1 3.7028 0.8900 1.1546 32 1 4.9949 2.9221 0.5373 33 1 3.4074 3.3469 1.2229 34 1 4.1086 3.2140 -1.7463 35 1 5.0132 5.1879 -0.4808 36 1 3.3535 5.5759 0.0323 37 1 2.6682 5.7837 -2.3417 38 1 4.3279 5.3957 -2.8548 39 1 3.5974 7.6939 -1.1603 40 1 2.8305 7.9482 -3.4520 41 1 4.4897 7.5597 -3.9662 42 1 2.3273 10.0709 -2.3228 43 1 3.4296 9.5932 -1.0094 44 1 3.6418 11.1622 -1.8224 45 1 3.1388 10.2319 -4.6354 46 1 4.7765 9.6849 -5.0679 47 1 5.1383 14.3107 -5.8430 48 1 1.5207 4.0142 -0.3363 49 1 1.8127 4.0475 -2.0926 50 1 2.1941 1.6028 -2.0816 51 1 0.5902 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602558314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -34.646386 kcal Electronic energy + Delta-G solvation = -22266.285086 eV Core-core repulsion = 19198.781686 eV Total energy + Delta-G solvation = -3067.503401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65623 -37.32631 -35.77727 -33.83325 -32.16237 -31.30447 -30.79230 -28.54344 -27.26098 -25.46781 -23.86473 -23.71399 -22.03589 -21.58763 -21.05977 -19.94114 -18.93385 -16.80459 -16.50574 -15.91699 -15.51009 -15.01460 -14.76552 -14.68497 -14.22999 -14.08897 -13.90705 -13.60896 -13.45296 -13.17558 -12.74758 -12.50171 -12.31317 -12.23455 -11.99891 -11.96672 -11.75460 -11.58275 -11.46748 -11.37901 -11.11999 -10.97142 -10.78853 -10.65654 -10.50063 -10.35687 -10.30849 -9.87470 -9.63613 -9.39102 -9.02804 -8.66816 -8.49211 -8.14790 -5.99601 -3.96327 3.33113 3.40352 3.44149 3.52613 4.25492 4.44741 4.48973 4.51903 4.66176 4.71887 4.83252 4.97191 5.06926 5.10610 5.13423 5.15333 5.30873 5.33885 5.33932 5.36440 5.47009 5.49116 5.56175 5.61834 5.66009 5.71096 5.73487 5.79393 5.79868 5.89388 5.91538 5.97395 6.02713 6.15945 6.21346 6.26828 6.41296 6.49608 6.75291 6.76715 6.81306 7.00445 7.09043 7.30011 7.33938 7.52901 7.66164 7.85563 8.60184 9.06232 9.63370 11.13826 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.002283 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.967245 B =12259.900625 C =12613.091228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.110 4.110 8 C 0.057 3.943 9 N -0.691 5.691 10 C 0.062 3.938 11 C -0.076 4.076 12 H 0.071 0.929 13 C -0.135 4.135 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.267 1.267 22 H -0.289 1.289 23 C -0.114 4.114 24 C 0.053 3.947 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.338 0.662 40 H 0.022 0.978 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.030 0.970 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 -28.123 10.709 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.072 4.072 5 C -0.148 4.148 6 C -0.106 4.106 7 C -0.148 4.148 8 C -0.072 4.072 9 N -0.323 5.323 10 C -0.066 4.066 11 C -0.095 4.095 12 H 0.089 0.911 13 C -0.193 4.193 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.215 1.215 23 C -0.151 4.151 24 C -0.075 4.075 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.157 0.843 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.032 0.968 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.049 0.951 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.911 -27.827 10.864 30.661 hybrid contribution -0.862 -0.555 -1.732 2.013 sum -7.774 -28.382 9.132 30.811 Atomic orbital electron populations 1.21810 0.94846 1.01484 1.02595 1.22058 0.96190 0.88960 1.00576 1.61967 1.13924 1.15243 1.35295 1.22085 0.87234 0.97519 1.00345 1.21629 1.00681 0.94228 0.98298 1.21177 0.95956 0.95632 0.97829 1.21584 1.02221 0.93624 0.97387 1.21996 0.98067 0.89542 0.97634 1.60546 1.62630 1.01700 1.07415 1.22147 0.98175 0.95347 0.90980 1.21031 0.99666 0.90953 0.97837 0.91071 1.21745 0.98701 1.01854 0.96972 1.19606 0.96409 0.96210 0.92441 1.21141 1.41216 0.94578 0.98063 0.90810 1.25037 0.94979 0.94829 0.98839 1.69917 1.47629 1.05553 1.31369 0.86799 0.79689 0.78371 0.84518 1.20387 1.19132 1.21513 1.21708 0.95932 0.95165 1.02320 1.22151 1.00755 0.94841 0.89737 0.92382 0.91784 0.92624 0.95148 0.90895 0.95090 0.90913 0.91387 0.91001 0.91532 0.91054 0.92051 0.95562 0.91539 0.84296 0.95972 0.91662 0.94118 0.94679 0.91345 0.96834 0.97156 0.92860 0.91076 0.91285 0.95131 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.84 37.15 0.37 -0.54 16 2 C 0.05 0.34 5.68 -3.82 -0.02 0.32 16 3 N -0.54 -4.38 4.66 -234.68 -1.09 -5.47 16 4 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 5 C -0.11 -0.87 5.38 -26.65 -0.14 -1.01 16 6 C -0.09 -0.74 2.25 -90.50 -0.20 -0.95 16 7 C -0.11 -1.08 4.95 -26.73 -0.13 -1.21 16 8 C 0.06 0.67 5.44 -3.83 -0.02 0.65 16 9 N -0.69 -9.96 6.50 -113.78 -0.74 -10.70 16 10 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 11 C -0.08 -1.52 2.55 -90.62 -0.23 -1.75 16 12 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.14 -2.52 8.77 37.16 0.33 -2.20 16 14 C -0.01 -0.21 3.51 -27.88 -0.10 -0.31 16 15 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 16 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 19 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 C -0.11 -0.97 5.08 -26.65 -0.14 -1.10 16 24 C 0.05 0.43 5.29 -3.83 -0.02 0.41 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 6.43 -51.93 -0.33 0.01 16 28 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 29 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.30 6.63 -51.93 -0.34 -0.04 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.34 4.64 6.98 -39.30 -0.27 4.37 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 44 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 45 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 46 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.60 6.70 -51.92 -0.35 0.25 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.08 0.58 6.21 -51.93 -0.32 0.26 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -30.10 380.33 -11.00 -41.11 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -10.24 Total: -1.21 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.76 Total: -19.42 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.06 Total: -43.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.10 -11.00 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602558314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.459 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds