Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46609 * 2 1 4 4 C 1.52998 * 109.47076 * 240.00565 * 2 1 3 5 5 C 1.50701 * 109.47699 * 64.99393 * 4 2 1 6 6 H 1.07999 * 119.99452 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00111 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99562 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47234 * 90.00203 * 9 7 5 11 11 H 1.48504 * 109.46941 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47231 * 329.99786 * 9 7 5 13 13 C 1.52992 * 109.47686 * 119.99795 * 2 1 3 14 14 N 1.46904 * 109.47357 * 295.00423 * 13 2 1 15 15 C 1.46897 * 111.00291 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47321 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.46941 * 185.06948 * 16 15 14 18 18 H 1.09002 * 109.47345 * 57.38832 * 17 16 15 19 19 C 1.52996 * 109.47148 * 297.38521 * 17 16 15 20 20 N 1.46900 * 109.47001 * 177.38890 * 17 16 15 21 21 C 1.46846 * 111.00516 * 182.12847 * 20 17 16 22 22 C 1.53028 * 109.52690 * 185.84009 * 21 20 17 23 23 C 1.53126 * 109.27998 * 300.81913 * 22 21 20 24 24 C 1.53120 * 109.20741 * 57.62373 * 23 22 21 25 25 C 1.46850 * 110.99968 * 306.33974 * 20 17 16 26 26 H 1.08995 * 109.47062 * 299.99624 * 1 2 3 27 27 H 1.08997 * 109.47434 * 59.99980 * 1 2 3 28 28 H 1.09004 * 109.46609 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47240 * 184.99888 * 4 2 1 30 30 H 1.09006 * 109.46947 * 304.99146 * 4 2 1 31 31 H 0.97001 * 119.99623 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47681 * 174.99955 * 13 2 1 33 33 H 1.09007 * 109.47139 * 55.00108 * 13 2 1 34 34 H 1.00899 * 110.99636 * 303.95269 * 14 13 2 35 35 H 1.09005 * 109.46961 * 59.99526 * 15 14 13 36 36 H 1.08997 * 109.47337 * 300.00162 * 15 14 13 37 37 H 1.08995 * 109.46803 * 65.06578 * 16 15 14 38 38 H 1.08994 * 109.46970 * 305.06943 * 16 15 14 39 39 H 1.09005 * 109.47473 * 180.02562 * 19 17 16 40 40 H 1.08999 * 109.47734 * 300.00523 * 19 17 16 41 41 H 1.09001 * 109.47299 * 60.00695 * 19 17 16 42 42 H 1.09007 * 109.46049 * 65.81951 * 21 20 17 43 43 H 1.09003 * 109.44932 * 305.85368 * 21 20 17 44 44 H 1.09001 * 109.50353 * 180.87932 * 22 21 20 45 45 H 1.09002 * 109.50438 * 60.76178 * 22 21 20 46 46 H 1.08996 * 109.52178 * 177.55878 * 23 22 21 47 47 H 1.09002 * 109.52170 * 297.69139 * 23 22 21 48 48 H 1.08998 * 109.50443 * 62.32362 * 24 23 22 49 49 H 1.08997 * 109.49935 * 182.43502 * 24 23 22 50 50 H 1.08996 * 109.46109 * 294.17390 * 25 20 17 51 51 H 1.09004 * 109.45957 * 54.15792 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0798 0.9742 -2.3757 7 6 1.9923 -0.4022 -3.7284 8 7 1.6439 0.2768 -4.7994 9 14 2.9615 -1.9894 -3.9030 10 1 2.0215 -3.1331 -4.0196 11 1 3.8100 -1.9200 -5.1198 12 1 3.8236 -2.1769 -2.7085 13 6 2.0402 -0.7211 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1250 -0.6270 3.6672 16 6 1.7027 0.1910 4.8892 17 6 2.3024 -0.4315 6.1516 18 1 3.3871 -0.4766 6.0545 19 6 1.7476 -1.8454 6.3360 20 7 1.9488 0.3891 7.3176 21 6 2.5505 -0.1511 8.5434 22 6 2.0452 0.6392 9.7525 23 6 2.4202 2.1144 9.5849 24 6 1.8228 2.6405 8.2768 25 6 2.3334 1.7911 7.1106 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7993 -1.2057 30 1 1.6055 -1.7198 -1.2952 31 1 1.8905 -0.0465 -5.6801 32 1 3.1264 -0.7994 1.2055 33 1 1.6056 -1.7198 1.2951 34 1 1.9883 0.9874 2.3966 35 1 3.2119 -0.7049 3.6404 36 1 1.6908 -1.6248 3.7297 37 1 0.6155 0.1937 4.9665 38 1 2.0619 1.2146 4.7830 39 1 2.1744 -2.2888 7.2356 40 1 0.6629 -1.8004 6.4330 41 1 2.0100 -2.4543 5.4709 42 1 3.6356 -0.0676 8.4826 43 1 2.2725 -1.1994 8.6527 44 1 2.5041 0.2480 10.6605 45 1 0.9615 0.5448 9.8219 46 1 2.0245 2.6882 10.4228 47 1 3.5053 2.2133 9.5555 48 1 0.7356 2.5785 8.3224 49 1 2.1229 3.6782 8.1313 50 1 3.4195 1.8655 7.0565 51 1 1.8977 2.1535 6.1795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = -28.855653 kcal Electronic energy + Delta-G solvation = -22476.327750 eV Core-core repulsion = 19409.075454 eV Total energy + Delta-G solvation = -3067.252296 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.69883 -37.27551 -35.72411 -33.85550 -32.12526 -31.33411 -30.77748 -28.36909 -27.20999 -25.39292 -24.47344 -23.31440 -22.39531 -21.78009 -20.31915 -19.95809 -19.01765 -16.80295 -16.72008 -15.85540 -15.26895 -15.01487 -14.77223 -14.39589 -14.30595 -13.97684 -13.90354 -13.64047 -13.57307 -13.35151 -12.81976 -12.65260 -12.39265 -12.03852 -11.91577 -11.69872 -11.58906 -11.50879 -11.32904 -11.31753 -11.06889 -10.94055 -10.82366 -10.64696 -10.57808 -10.42297 -10.33689 -9.76282 -9.71658 -9.36959 -9.03088 -8.56103 -8.49722 -8.16020 -6.00008 -3.96647 3.32732 3.39916 3.43553 3.52262 4.28672 4.47854 4.48543 4.52651 4.58842 4.76208 4.85814 4.96807 5.08778 5.11450 5.14751 5.24805 5.30535 5.32380 5.34389 5.36884 5.49446 5.52818 5.59374 5.63826 5.65959 5.68136 5.74543 5.78343 5.79437 5.88732 5.95019 6.03767 6.05980 6.11674 6.21387 6.34063 6.45838 6.62644 6.85843 6.86686 6.88800 7.07202 7.18356 7.28765 7.34706 7.49271 7.63066 7.85253 8.59942 9.06016 9.62992 11.13458 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.002384 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.613376 B =11742.121326 C =12087.082043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.112 4.112 17 C 0.083 3.917 18 H 0.037 0.963 19 C -0.147 4.147 20 N -0.532 5.532 21 C 0.052 3.948 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.049 3.951 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.337 0.663 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.029 0.971 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -0.004 29.864 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.071 4.071 16 C -0.150 4.150 17 C -0.025 4.025 18 H 0.055 0.945 19 C -0.204 4.204 20 N -0.257 5.257 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.079 4.079 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.208 -0.315 29.755 29.781 hybrid contribution 2.468 -0.656 -0.426 2.589 sum 3.676 -0.971 29.329 29.575 Atomic orbital electron populations 1.21599 0.95248 1.00631 1.00699 1.21006 0.96380 0.98986 0.92895 0.92258 1.19618 0.95667 0.95911 0.93547 1.21139 1.35160 1.09582 0.89083 0.90811 1.25038 0.95716 0.96956 0.95979 1.69916 1.47253 1.39327 0.97975 0.86797 0.80629 0.84408 0.77538 1.20357 1.21517 1.19176 1.22168 0.96964 0.97783 0.89761 1.60481 1.64082 1.05708 1.01436 1.21965 0.96800 0.98532 0.89762 1.21685 1.02440 0.98872 0.92024 1.21586 0.97216 0.93649 0.90048 0.94542 1.21926 1.02178 0.94873 1.01421 1.61945 1.59584 1.01925 1.02268 1.22136 0.96192 0.99273 0.89982 1.21579 1.01965 0.95041 0.96832 1.21585 1.00369 0.96214 0.97801 1.21586 1.01492 0.98318 0.94074 1.22197 0.97847 0.88453 0.99386 0.93645 0.92271 0.94248 0.97009 0.97061 0.92857 0.95968 0.91606 0.84561 0.96031 0.90963 0.90154 0.91824 0.92907 0.91542 0.91845 0.95294 0.90418 0.91790 0.91059 0.91936 0.92492 0.91027 0.91634 0.95269 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.69 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.08 16 13 C 0.06 1.02 5.07 -3.83 -0.02 1.01 16 14 N -0.69 -9.60 5.96 -113.78 -0.68 -10.28 16 15 C 0.06 0.69 5.25 -3.83 -0.02 0.67 16 16 C -0.11 -1.13 4.63 -26.73 -0.12 -1.25 16 17 C 0.08 0.77 2.18 -67.72 -0.15 0.62 16 18 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 19 C -0.15 -1.25 8.74 37.16 0.32 -0.92 16 20 N -0.53 -4.76 4.53 -226.69 -1.03 -5.78 16 21 C 0.05 0.41 5.25 -3.84 -0.02 0.39 16 22 C -0.12 -0.79 6.09 -26.65 -0.16 -0.96 16 23 C -0.12 -0.81 6.00 -26.60 -0.16 -0.97 16 24 C -0.12 -0.86 6.10 -26.65 -0.16 -1.02 16 25 C 0.05 0.41 5.08 -3.83 -0.02 0.40 16 26 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.34 4.50 8.73 -39.29 -0.34 4.15 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.85 6.76 -51.93 -0.35 0.50 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.63 6.04 -51.93 -0.31 0.32 16 39 H 0.05 0.40 6.33 -51.93 -0.33 0.07 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.54 6.61 -51.93 -0.34 0.19 16 42 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.58 6.07 -51.93 -0.32 0.26 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.08 0.73 5.81 -51.93 -0.30 0.43 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -29.97 378.09 -10.95 -40.92 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -10.14 Total: -1.22 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -0.91 Total: -19.29 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.93 Total: -43.46 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.97 -10.95 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.067 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds