Wall clock time and date at job start Tue Mar 31 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47612 * 2 1 4 4 C 1.52996 * 109.47343 * 119.99995 * 2 1 3 5 5 C 1.50694 * 109.47514 * 295.00401 * 4 2 1 6 6 H 1.08007 * 119.99647 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00595 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00546 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46843 * 119.99597 * 9 7 5 12 12 H 1.48492 * 109.47286 * 240.00298 * 9 7 5 13 13 C 1.53009 * 109.47280 * 240.00338 * 2 1 3 14 14 N 1.46892 * 109.47177 * 64.99697 * 13 2 1 15 15 C 1.46902 * 111.00061 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.47217 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47070 * 174.94132 * 16 15 14 18 18 H 1.08992 * 109.47375 * 303.76874 * 17 16 15 19 19 C 1.53003 * 109.47078 * 183.76765 * 17 16 15 20 20 N 1.46910 * 109.47173 * 63.77022 * 17 16 15 21 21 C 1.46845 * 110.99802 * 68.78003 * 20 17 16 22 22 C 1.53038 * 109.52122 * 185.83878 * 21 20 17 23 23 C 1.53120 * 109.27907 * 300.81982 * 22 21 20 24 24 C 1.53121 * 109.20935 * 57.62349 * 23 22 21 25 25 C 1.46845 * 110.99928 * 192.98836 * 20 17 16 26 26 H 1.09005 * 109.47315 * 300.00123 * 1 2 3 27 27 H 1.09005 * 109.47023 * 59.99786 * 1 2 3 28 28 H 1.08994 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47024 * 55.00025 * 4 2 1 30 30 H 1.09003 * 109.47636 * 174.99448 * 4 2 1 31 31 H 0.96995 * 120.00325 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46601 * 304.99897 * 13 2 1 33 33 H 1.08997 * 109.46934 * 185.00306 * 13 2 1 34 34 H 1.00903 * 111.00580 * 303.96189 * 14 13 2 35 35 H 1.08998 * 109.47040 * 59.99927 * 15 14 13 36 36 H 1.09004 * 109.47080 * 299.99784 * 15 14 13 37 37 H 1.08994 * 109.47275 * 54.93615 * 16 15 14 38 38 H 1.09003 * 109.46999 * 294.94141 * 16 15 14 39 39 H 1.09000 * 109.46687 * 60.00252 * 19 17 16 40 40 H 1.08997 * 109.47059 * 180.02562 * 19 17 16 41 41 H 1.08992 * 109.47106 * 300.00274 * 19 17 16 42 42 H 1.09002 * 109.46310 * 65.82424 * 21 20 17 43 43 H 1.09002 * 109.45801 * 305.85033 * 21 20 17 44 44 H 1.09004 * 109.50063 * 180.88279 * 22 21 20 45 45 H 1.08993 * 109.50439 * 60.76472 * 22 21 20 46 46 H 1.09000 * 109.52222 * 177.55581 * 23 22 21 47 47 H 1.08995 * 109.52540 * 297.68569 * 23 22 21 48 48 H 1.08992 * 109.50630 * 62.31805 * 24 23 22 49 49 H 1.08999 * 109.50258 * 182.43698 * 24 23 22 50 50 H 1.08996 * 109.46342 * 294.17836 * 25 20 17 51 51 H 1.09002 * 109.46075 * 54.15818 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0805 0.9745 2.3757 7 6 1.9923 -0.4023 3.7282 8 7 2.6747 -1.5199 3.8512 9 14 1.4987 0.5627 5.2497 10 1 0.7421 1.7743 4.8434 11 1 0.6440 -0.2859 6.1183 12 1 2.7169 0.9665 5.9965 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.7024 0.1911 -4.8893 17 6 2.3017 -0.4316 -6.1518 18 1 3.3846 -0.4957 -6.0464 19 6 1.9577 0.4387 -7.3623 20 7 1.7477 -1.7786 -6.3439 21 6 0.3235 -1.7165 -6.6962 22 6 -0.2533 -3.1332 -6.7454 23 6 0.5134 -3.9554 -7.7850 24 6 2.0012 -3.9639 -7.4229 25 6 2.5123 -2.5231 -7.3526 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7996 1.2055 31 1 2.9220 -1.8428 4.7317 32 1 1.6053 -1.7198 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 0.6528 0.1794 -2.4753 35 1 1.6904 -1.6248 -3.7298 36 1 3.2117 -0.7049 -3.6406 37 1 2.0617 1.2146 -4.7831 38 1 0.6151 0.1939 -4.9665 39 1 2.3688 1.4381 -7.2197 40 1 2.3843 -0.0051 -8.2618 41 1 0.8748 0.5029 -7.4676 42 1 0.2110 -1.2444 -7.6722 43 1 -0.2108 -1.1327 -5.9467 44 1 -1.3066 -3.0877 -7.0223 45 1 -0.1537 -3.6009 -5.7660 46 1 0.1346 -4.9774 -7.7926 47 1 0.3810 -3.5104 -8.7711 48 1 2.1373 -4.4450 -6.4545 49 1 2.5576 -4.5116 -8.1835 50 1 2.3896 -2.0472 -8.3255 51 1 3.5676 -2.5252 -7.0798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:36 Heat of formation + Delta-G solvation = -33.852325 kcal Electronic energy + Delta-G solvation = -22782.719054 eV Core-core repulsion = 19715.250087 eV Total energy + Delta-G solvation = -3067.468968 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78589 -37.05785 -35.56736 -33.74802 -32.03047 -31.15113 -30.37731 -28.50906 -26.73496 -25.29558 -24.48564 -23.40698 -22.68084 -21.63767 -20.62204 -19.40946 -18.80562 -16.75193 -16.32640 -15.41862 -15.32006 -14.93444 -14.65986 -14.48030 -14.44108 -14.03703 -13.83294 -13.49280 -13.36997 -13.03912 -12.67377 -12.40390 -12.32216 -12.19657 -11.91347 -11.77365 -11.51480 -11.41769 -11.07792 -11.04153 -10.92815 -10.87975 -10.82455 -10.66675 -10.54676 -10.39956 -10.26584 -10.08912 -9.64047 -9.07993 -8.88747 -8.44077 -8.28546 -7.95402 -5.93083 -3.93927 3.35127 3.42507 3.46803 3.65595 4.37169 4.51956 4.53121 4.61469 4.65328 4.84946 4.90491 5.01726 5.10264 5.15764 5.23731 5.31559 5.35056 5.41697 5.42666 5.49297 5.57599 5.59242 5.62311 5.69616 5.75230 5.84267 5.86375 5.88280 5.90575 5.94774 5.98879 6.12252 6.14029 6.25588 6.28555 6.39027 6.56416 6.64979 6.94111 6.94396 7.04564 7.17771 7.25282 7.52901 7.75849 7.81345 7.93513 8.08029 8.52128 9.12879 9.69239 11.18546 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.002592 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.931953 B =10799.738648 C =11108.053868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.695 5.695 15 C 0.067 3.933 16 C -0.107 4.107 17 C 0.082 3.918 18 H 0.082 0.918 19 C -0.184 4.184 20 N -0.528 5.528 21 C 0.052 3.948 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.118 4.118 25 C 0.055 3.945 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.334 0.666 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.031 0.969 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -1.689 -26.591 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.062 4.062 14 N -0.326 5.326 15 C -0.063 4.063 16 C -0.145 4.145 17 C -0.027 4.027 18 H 0.101 0.899 19 C -0.243 4.243 20 N -0.252 5.252 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.049 0.951 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.635 -1.638 -25.979 26.163 hybrid contribution -0.861 0.087 0.077 0.868 sum -3.496 -1.552 -25.901 26.182 Atomic orbital electron populations 1.21730 0.96782 1.00357 1.00163 1.21217 0.94798 1.00029 0.94274 0.91762 1.19115 0.96123 0.95368 0.90423 1.21290 1.34406 1.08192 0.91005 0.92533 1.25028 0.95407 0.95108 0.99092 1.69981 1.39280 1.21264 1.23203 0.86581 0.78235 0.80128 0.83332 1.19762 1.21153 1.21102 1.22089 1.00160 0.94386 0.89603 1.60616 1.19266 1.50860 1.01882 1.21801 1.00150 0.95646 0.88660 1.21613 1.00363 0.99499 0.93001 1.21731 0.99624 0.87064 0.94296 0.89947 1.22453 1.02088 1.00948 0.98838 1.62115 1.02312 1.15377 1.45382 1.22135 0.89037 0.97094 0.99329 1.21597 0.98581 0.95341 1.00110 1.21564 0.95611 1.00084 0.98541 1.21586 0.95728 0.96092 1.02133 1.22073 0.97874 0.94084 0.93247 0.91971 0.94998 0.94092 0.96778 0.96693 0.93197 0.95996 0.91705 0.84778 0.94488 0.91834 0.90839 0.92289 0.91875 0.92890 0.92256 0.94795 0.90548 0.91795 0.91011 0.91973 0.92588 0.90975 0.91803 0.95106 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.15 0.33 -2.23 16 2 C -0.08 -1.78 2.54 -90.62 -0.23 -2.01 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.56 8.41 -34.45 -0.29 -14.85 16 6 H 0.06 1.58 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.07 1.22 5.14 -3.82 -0.02 1.20 16 14 N -0.69 -10.73 6.50 -113.78 -0.74 -11.47 16 15 C 0.07 0.88 5.50 -3.82 -0.02 0.86 16 16 C -0.11 -1.12 4.90 -26.73 -0.13 -1.25 16 17 C 0.08 0.75 2.31 -67.71 -0.16 0.59 16 18 H 0.08 0.78 7.93 -51.93 -0.41 0.36 16 19 C -0.18 -1.45 8.40 37.16 0.31 -1.14 16 20 N -0.53 -4.91 4.08 -226.69 -0.92 -5.83 16 21 C 0.05 0.45 4.47 -3.83 -0.02 0.43 16 22 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 23 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 24 C -0.12 -0.91 6.10 -26.65 -0.16 -1.07 16 25 C 0.06 0.46 5.18 -3.83 -0.02 0.44 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.33 4.91 6.98 -39.29 -0.27 4.63 16 35 H 0.04 0.52 7.86 -51.93 -0.41 0.11 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.61 6.39 -51.93 -0.33 0.28 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.40 6.93 -51.93 -0.36 0.04 16 41 H 0.06 0.47 6.44 -51.93 -0.33 0.13 16 42 H 0.03 0.28 6.57 -51.93 -0.34 -0.06 16 43 H 0.08 0.70 6.28 -51.93 -0.33 0.38 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.03 0.25 6.98 -51.93 -0.36 -0.12 16 51 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -29.71 379.91 -11.30 -41.01 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -10.12 Total: -0.57 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.95 Total: -19.16 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.93 Total: -43.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.71 -11.30 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds