Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.47282 * 55.00210 * 17 16 15 19 19 C 1.53010 * 109.46837 * 175.00017 * 17 16 15 20 20 N 1.46892 * 109.47318 * 294.99782 * 17 16 15 21 21 C 1.46847 * 111.00115 * 299.21199 * 20 17 16 22 22 C 1.53042 * 109.52354 * 174.15959 * 21 20 17 23 23 C 1.53114 * 109.28117 * 59.17870 * 22 21 20 24 24 C 1.53126 * 109.15925 * 302.35013 * 23 22 21 25 25 C 1.46850 * 111.00099 * 175.00052 * 20 17 16 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 35 35 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 36 36 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 37 37 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 38 38 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 39 39 H 1.08993 * 109.46987 * 60.00147 * 19 17 16 40 40 H 1.08996 * 109.46912 * 180.02562 * 19 17 16 41 41 H 1.08996 * 109.47000 * 299.99662 * 19 17 16 42 42 H 1.08993 * 109.46310 * 294.17509 * 21 20 17 43 43 H 1.09001 * 109.46286 * 54.14510 * 21 20 17 44 44 H 1.09001 * 109.50075 * 299.23588 * 22 21 20 45 45 H 1.09000 * 109.53307 * 179.14001 * 22 21 20 46 46 H 1.08992 * 109.52597 * 182.44164 * 23 22 21 47 47 H 1.09001 * 109.57167 * 62.28042 * 23 22 21 48 48 H 1.08995 * 109.49844 * 297.70865 * 24 23 22 49 49 H 1.09002 * 109.53183 * 177.61061 * 24 23 22 50 50 H 1.08993 * 109.46373 * 305.85678 * 25 20 17 51 51 H 1.09002 * 109.45802 * 65.83767 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 1 3.2732 -0.6581 6.0950 19 6 1.8840 0.3789 7.3741 20 7 1.5201 -1.7958 6.3083 21 6 0.0664 -1.6205 6.4199 22 6 -0.6151 -2.9908 6.4247 23 6 -0.0893 -3.8128 7.6046 24 6 1.4324 -3.9394 7.4905 25 6 2.0545 -2.5417 7.4548 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4752 35 1 1.6920 -1.6245 3.7300 36 1 3.2126 -0.7037 3.6401 37 1 2.1373 1.1894 4.8260 38 1 0.6164 0.2691 4.9165 39 1 0.8076 0.5366 7.4405 40 1 2.2360 -0.1138 8.2804 41 1 2.3862 1.3401 7.2651 42 1 -0.1661 -1.0961 7.3466 43 1 -0.2953 -1.0380 5.5726 44 1 -0.3944 -3.5102 5.4922 45 1 -1.6930 -2.8615 6.5229 46 1 -0.5398 -4.8051 7.5868 47 1 -0.3442 -3.3139 8.5396 48 1 1.6853 -4.4738 6.5748 49 1 1.8180 -4.4875 8.3501 50 1 3.1368 -2.6282 7.3591 51 1 1.8125 -2.0129 8.3767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = -32.658293 kcal Electronic energy + Delta-G solvation = -22828.757553 eV Core-core repulsion = 19761.340362 eV Total energy + Delta-G solvation = -3067.417190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81598 -37.05911 -35.56705 -33.75003 -32.03881 -31.14227 -30.36925 -28.51837 -26.73738 -25.29461 -24.50758 -23.41339 -22.65732 -21.64396 -20.66226 -19.37306 -18.80497 -16.78193 -16.32475 -15.45389 -15.30614 -14.92109 -14.65930 -14.50187 -14.42997 -14.05145 -13.86312 -13.48720 -13.35784 -13.00602 -12.68427 -12.44657 -12.26597 -12.21765 -11.91937 -11.80229 -11.52527 -11.42488 -11.09119 -11.00271 -10.93493 -10.87233 -10.83861 -10.65359 -10.54479 -10.37308 -10.27312 -10.09823 -9.64260 -9.08109 -8.90055 -8.43931 -8.28316 -7.95989 -5.93065 -3.93982 3.36149 3.42169 3.45522 3.66131 4.36126 4.51971 4.53378 4.61432 4.66056 4.85003 4.89479 5.02632 5.10159 5.15132 5.22906 5.32225 5.33774 5.41351 5.42619 5.49755 5.57263 5.59577 5.61222 5.70048 5.75570 5.84239 5.86219 5.88615 5.90308 5.94946 5.98007 6.12097 6.14368 6.24472 6.27875 6.38453 6.55897 6.64544 6.93984 6.94404 7.04080 7.17593 7.24911 7.52001 7.75456 7.80534 7.93300 8.07931 8.51937 9.12580 9.69100 11.18536 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.002620 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.112965 B =10684.272960 C =10990.888389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.695 5.695 15 C 0.065 3.935 16 C -0.110 4.110 17 C 0.082 3.918 18 H 0.083 0.917 19 C -0.185 4.185 20 N -0.527 5.527 21 C 0.050 3.950 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.118 4.118 25 C 0.055 3.945 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.334 0.666 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -1.621 26.370 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.326 5.326 15 C -0.064 4.064 16 C -0.148 4.148 17 C -0.027 4.027 18 H 0.102 0.898 19 C -0.244 4.244 20 N -0.252 5.252 21 C -0.078 4.078 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.303 -1.599 25.775 26.035 hybrid contribution -0.946 0.153 -0.108 0.964 sum -4.249 -1.447 25.668 26.057 Atomic orbital electron populations 1.21731 0.96780 1.00364 1.00157 1.21219 0.94798 1.00028 0.94277 0.91763 1.19109 0.96116 0.95359 0.90400 1.21254 1.34518 1.08202 0.91022 0.92588 1.25025 0.95398 0.95097 0.99079 1.69968 1.39160 1.21276 1.23318 0.86635 0.78907 0.79813 0.82884 1.20738 1.21350 1.19934 1.22089 1.00170 0.94390 0.89586 1.60594 1.19240 1.50912 1.01861 1.21826 1.00187 0.95732 0.88696 1.21670 1.00944 0.99192 0.92955 1.21724 0.99070 0.87687 0.94242 0.89845 1.22458 1.02102 1.00905 0.98968 1.62130 1.03898 1.18027 1.41105 1.22159 0.87985 0.97123 1.00517 1.21593 0.98989 0.95759 0.99265 1.21565 0.95922 1.00082 0.98234 1.21587 0.95297 0.96444 1.02205 1.22075 0.99383 0.94219 0.91652 0.94085 0.95004 0.91973 0.96700 0.96776 0.93135 0.95978 0.91698 0.84775 0.94354 0.91790 0.90861 0.92051 0.92416 0.92730 0.91882 0.94903 0.90306 0.91008 0.91769 0.91974 0.92581 0.91002 0.91834 0.90935 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.78 2.55 -90.62 -0.23 -2.01 16 3 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.59 8.41 -34.44 -0.29 -14.88 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.21 5.14 -3.83 -0.02 1.19 16 14 N -0.69 -10.68 6.50 -113.78 -0.74 -11.42 16 15 C 0.06 0.85 5.57 -3.82 -0.02 0.83 16 16 C -0.11 -1.14 4.77 -26.73 -0.13 -1.27 16 17 C 0.08 0.74 2.35 -67.71 -0.16 0.58 16 18 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 19 C -0.19 -1.46 8.50 37.16 0.32 -1.14 16 20 N -0.53 -4.92 4.10 -226.69 -0.93 -5.85 16 21 C 0.05 0.44 4.64 -3.83 -0.02 0.42 16 22 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 23 C -0.12 -0.90 6.00 -26.61 -0.16 -1.06 16 24 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 25 C 0.05 0.45 5.02 -3.83 -0.02 0.43 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 28 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.33 4.88 6.98 -39.29 -0.27 4.60 16 35 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.63 6.05 -51.93 -0.31 0.32 16 39 H 0.06 0.46 6.52 -51.93 -0.34 0.12 16 40 H 0.05 0.41 6.65 -51.93 -0.35 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.28 6.62 -51.93 -0.34 -0.06 16 43 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 51 H 0.03 0.26 6.73 -51.93 -0.35 -0.09 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -29.66 379.08 -11.26 -40.92 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -10.07 Total: -0.41 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.95 Total: -19.25 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.93 Total: -43.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.66 -11.26 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.263 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds