Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.46623 * 174.99905 * 4 2 1 6 6 N 1.46902 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47234 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46965 * 305.00257 * 8 7 6 10 10 C 1.53002 * 109.46806 * 64.99923 * 8 7 6 11 11 C 1.53003 * 109.46996 * 185.00028 * 8 7 6 12 12 C 1.50695 * 109.47067 * 175.00166 * 11 8 7 13 13 H 1.08012 * 119.99922 * 359.97438 * 12 11 8 14 14 C 1.37875 * 120.00495 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99636 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00533 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47475 * 89.99419 * 16 14 12 18 18 H 1.48501 * 109.47039 * 209.99652 * 16 14 12 19 19 H 1.48498 * 109.46831 * 329.99256 * 16 14 12 20 20 N 1.46901 * 109.47052 * 119.99792 * 2 1 3 21 21 C 1.46850 * 110.99875 * 59.21338 * 20 2 1 22 22 C 1.53032 * 109.52110 * 174.16071 * 21 20 2 23 23 C 1.53119 * 109.27994 * 59.18070 * 22 21 20 24 24 C 1.53113 * 109.15904 * 302.34148 * 23 22 21 25 25 C 1.46845 * 110.99910 * 295.00595 * 20 2 1 26 26 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 27 27 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 29 29 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 30 30 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 5 4 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 5 4 2 33 33 H 1.00898 * 110.99915 * 56.05185 * 6 5 4 34 34 H 1.09002 * 109.47091 * 300.00139 * 7 6 5 35 35 H 1.09001 * 109.46854 * 60.00166 * 7 6 5 36 36 H 1.08999 * 109.47169 * 299.99788 * 10 8 7 37 37 H 1.09003 * 109.47086 * 60.00408 * 10 8 7 38 38 H 1.09002 * 109.46367 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.46885 * 294.99930 * 11 8 7 40 40 H 1.09003 * 109.47053 * 54.99762 * 11 8 7 41 41 H 0.97000 * 120.00449 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.46138 * 294.17790 * 21 20 2 43 43 H 1.08994 * 109.46267 * 54.13972 * 21 20 2 44 44 H 1.08998 * 109.50143 * 299.23297 * 22 21 20 45 45 H 1.09004 * 109.53256 * 179.13646 * 22 21 20 46 46 H 1.09001 * 109.52086 * 182.43854 * 23 22 21 47 47 H 1.09002 * 109.57563 * 62.28186 * 23 22 21 48 48 H 1.08996 * 109.50816 * 297.71779 * 24 23 22 49 49 H 1.08998 * 109.53650 * 177.61298 * 24 23 22 50 50 H 1.09002 * 109.46019 * 305.85343 * 25 20 2 51 51 H 1.09001 * 109.46740 * 65.83197 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 7 4.0546 -1.3062 -2.5128 7 6 5.5183 -1.2236 -2.6077 8 6 5.9898 -1.9544 -3.8664 9 1 5.6119 -2.9768 -3.8561 10 6 5.4622 -1.2282 -5.1055 11 6 7.5193 -1.9763 -3.9006 12 6 7.9837 -2.8005 -5.0737 13 1 7.2603 -3.2628 -5.7290 14 6 9.3321 -2.9653 -5.3098 15 7 10.2130 -2.4027 -4.5115 16 14 9.9078 -3.9863 -6.7642 17 1 10.0594 -3.1112 -7.9543 18 1 11.2143 -4.6143 -6.4419 19 1 8.9074 -5.0451 -7.0525 20 7 2.0197 -0.6925 1.1995 21 6 1.5336 -2.0775 1.2429 22 6 2.1777 -2.8088 2.4227 23 6 1.8222 -2.0824 3.7229 24 6 2.2965 -0.6294 3.6325 25 6 1.6488 0.0389 2.4176 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -0.2617 -2.1370 30 1 1.7518 -1.7715 -1.2056 31 1 3.8532 0.4370 -1.3572 32 1 3.9995 -1.0727 -0.4259 33 1 3.6169 -0.9412 -3.3454 34 1 5.8205 -0.1777 -2.6605 35 1 5.9660 -1.6873 -1.7287 36 1 4.3726 -1.2126 -5.0811 37 1 5.8402 -0.2059 -5.1158 38 1 5.7978 -1.7492 -6.0022 39 1 7.8951 -0.9580 -4.0006 40 1 7.8972 -2.4141 -2.9766 41 1 11.1616 -2.5183 -4.6777 42 1 0.4501 -2.0784 1.3627 43 1 1.7965 -2.5839 0.3142 44 1 3.2603 -2.8203 2.2965 45 1 1.8053 -3.8324 2.4642 46 1 2.3145 -2.5748 4.5615 47 1 0.7424 -2.1047 3.8702 48 1 3.3809 -0.6065 3.5254 49 1 2.0089 -0.0951 4.5380 50 1 1.9955 1.0696 2.3422 51 1 0.5649 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -32.665273 kcal Electronic energy + Delta-G solvation = -22793.882101 eV Core-core repulsion = 19726.464608 eV Total energy + Delta-G solvation = -3067.417493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77762 -37.06245 -35.54886 -33.74784 -32.03546 -31.09648 -30.34113 -28.51887 -26.73952 -25.29185 -24.47970 -23.35753 -22.65156 -21.64701 -20.63811 -19.33745 -18.80555 -16.73348 -16.37405 -15.52502 -15.17789 -14.93664 -14.61534 -14.43114 -14.36828 -14.10568 -13.90820 -13.45020 -13.11344 -13.10369 -12.76209 -12.41163 -12.24978 -12.16876 -12.08156 -11.73113 -11.48461 -11.36955 -11.06088 -10.97105 -10.90404 -10.87228 -10.81023 -10.66422 -10.50879 -10.34108 -10.26984 -10.10397 -9.64227 -9.08174 -8.89903 -8.39177 -8.28375 -7.99259 -5.93042 -3.93981 3.35963 3.42156 3.45838 3.69103 4.35459 4.52242 4.57785 4.65752 4.71494 4.88939 4.91990 5.06819 5.10044 5.16590 5.25911 5.32989 5.36570 5.42621 5.43252 5.52161 5.56304 5.63555 5.65303 5.72982 5.78282 5.83382 5.85333 5.91780 5.93260 5.94904 6.03447 6.11936 6.19691 6.23502 6.33901 6.37254 6.55503 6.64420 6.97460 6.98342 7.03781 7.17021 7.24757 7.51474 7.75442 7.80633 7.93202 8.07895 8.51918 9.12544 9.69101 11.18557 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.002682 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.803099 B =10437.755082 C =11001.712138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.110 4.110 5 C 0.066 3.934 6 N -0.693 5.693 7 C 0.066 3.934 8 C -0.084 4.084 9 H 0.064 0.936 10 C -0.133 4.133 11 C 0.028 3.972 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.054 3.946 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.526 5.526 21 C 0.049 3.951 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.055 3.945 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.081 0.919 33 H 0.333 0.667 34 H 0.021 0.979 35 H 0.066 0.934 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.032 0.968 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.105 5.133 14.503 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.064 4.064 6 N -0.325 5.325 7 C -0.062 4.062 8 C -0.103 4.103 9 H 0.083 0.917 10 C -0.191 4.191 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.251 5.251 21 C -0.078 4.078 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.387 4.519 14.816 25.604 hybrid contribution -0.337 0.506 -0.987 1.159 sum -20.724 5.025 13.829 25.416 Atomic orbital electron populations 1.22463 0.97733 1.02229 1.02032 1.21712 0.92306 0.98346 0.90317 0.90119 1.21674 0.96157 1.01246 0.95761 1.21857 0.94064 0.95823 0.94625 1.60596 1.07160 1.59865 1.04843 1.22094 0.86029 0.98178 0.99918 1.21221 0.99216 0.98330 0.91556 0.91734 1.21736 0.97648 0.99942 0.99737 1.19109 0.87911 0.96975 0.96984 1.21253 0.91434 1.30826 1.11480 0.92592 1.25024 0.97043 0.96041 0.96494 1.69970 1.01272 1.44702 1.37778 0.86634 0.78102 0.80535 0.82974 1.20793 1.21320 1.19896 1.62118 1.59448 1.02034 1.01453 1.22181 0.96713 0.89272 0.99662 1.21589 1.01982 0.98178 0.93838 1.21569 1.00483 0.95900 0.97867 1.21584 1.01569 0.95604 0.96758 1.22077 0.97561 0.97656 0.90039 0.92050 0.92279 0.92715 0.92021 0.90838 0.96278 0.90060 0.84876 0.96088 0.91573 0.94986 0.94106 0.91964 0.96809 0.96663 0.93137 0.95033 0.89823 0.90861 0.91741 0.91990 0.92641 0.90968 0.91900 0.91051 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.50 37.16 0.32 -1.15 16 2 C 0.08 0.75 2.35 -67.71 -0.16 0.59 16 3 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 4 C -0.11 -1.15 4.76 -26.73 -0.13 -1.28 16 5 C 0.07 0.86 5.57 -3.82 -0.02 0.84 16 6 N -0.69 -10.65 6.50 -113.77 -0.74 -11.39 16 7 C 0.07 1.21 5.14 -3.82 -0.02 1.19 16 8 C -0.08 -1.78 2.55 -90.62 -0.23 -2.01 16 9 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 10 C -0.13 -2.55 8.77 37.16 0.33 -2.23 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 12 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 13 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 20 N -0.53 -5.04 4.10 -226.68 -0.93 -5.97 16 21 C 0.05 0.46 4.64 -3.84 -0.02 0.44 16 22 C -0.12 -1.04 6.09 -26.65 -0.16 -1.21 16 23 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 24 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 25 C 0.05 0.46 5.02 -3.83 -0.02 0.44 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.48 6.52 -51.93 -0.34 0.14 16 28 H 0.05 0.41 6.65 -51.93 -0.35 0.07 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.82 6.05 -51.93 -0.31 0.50 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 33 H 0.33 4.83 6.98 -39.29 -0.27 4.55 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.28 6.62 -51.93 -0.34 -0.06 16 43 H 0.08 0.86 5.93 -51.93 -0.31 0.55 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 51 H 0.03 0.26 6.73 -51.93 -0.35 -0.09 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -29.61 379.08 -11.26 -40.87 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -10.07 Total: -0.19 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.95 Total: -19.33 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.93 Total: -44.03 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.61 -11.26 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.206 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds