Wall clock time and date at job start Tue Mar 31 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46971 * 2 1 4 4 C 1.52994 * 109.47227 * 119.99973 * 2 1 3 5 5 C 1.50698 * 109.47266 * 295.00135 * 4 2 1 6 6 H 1.07995 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99934 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00203 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47417 * 90.00170 * 9 7 5 11 11 H 1.48507 * 109.47096 * 209.99997 * 9 7 5 12 12 H 1.48503 * 109.47114 * 330.00056 * 9 7 5 13 13 C 1.53005 * 109.46987 * 240.00321 * 2 1 3 14 14 N 1.46897 * 109.47268 * 64.99938 * 13 2 1 15 15 C 1.46897 * 110.99753 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46937 * 179.97438 * 15 14 13 17 17 C 1.53004 * 110.01620 * 59.29586 * 16 15 14 18 18 N 1.46897 * 109.46984 * 307.87283 * 17 16 15 19 19 C 1.46904 * 110.99791 * 157.30299 * 18 17 16 20 20 C 1.46901 * 111.00007 * 281.25344 * 18 17 16 21 21 C 1.54261 * 110.03398 * 297.90468 * 16 15 14 22 22 C 1.54959 * 104.16276 * 217.13480 * 21 16 15 23 23 C 1.54887 * 102.77583 * 37.88914 * 22 21 16 24 24 C 1.53876 * 110.03389 * 180.68494 * 16 15 14 25 25 H 1.09006 * 109.47695 * 59.99883 * 1 2 3 26 26 H 1.09004 * 109.47432 * 299.99935 * 1 2 3 27 27 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47384 * 55.00008 * 4 2 1 29 29 H 1.08997 * 109.47224 * 174.99797 * 4 2 1 30 30 H 0.97000 * 119.99892 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46589 * 184.99747 * 13 2 1 32 32 H 1.08998 * 109.46716 * 304.99380 * 13 2 1 33 33 H 1.00904 * 110.99529 * 303.95044 * 14 13 2 34 34 H 1.09001 * 109.46793 * 299.99511 * 15 14 13 35 35 H 1.08999 * 109.47650 * 59.99961 * 15 14 13 36 36 H 1.08998 * 109.47094 * 67.87707 * 17 16 15 37 37 H 1.09000 * 109.47281 * 187.87519 * 17 16 15 38 38 H 1.08993 * 109.47511 * 60.00104 * 19 18 17 39 39 H 1.09003 * 109.47469 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.47047 * 299.99620 * 19 18 17 41 41 H 1.09003 * 109.46865 * 84.52737 * 20 18 17 42 42 H 1.09008 * 109.46593 * 204.52328 * 20 18 17 43 43 H 1.08996 * 109.47400 * 324.52175 * 20 18 17 44 44 H 1.09000 * 110.48722 * 335.78738 * 21 16 15 45 45 H 1.09005 * 110.48679 * 98.42505 * 21 16 15 46 46 H 1.08998 * 110.71954 * 279.57611 * 22 21 16 47 47 H 1.09002 * 110.92623 * 156.28972 * 22 21 16 48 48 H 1.09006 * 110.48951 * 203.40863 * 23 22 21 49 49 H 1.08998 * 110.48992 * 80.76110 * 23 22 21 50 50 H 1.09002 * 110.03178 * 238.57172 * 24 16 15 51 51 H 1.09003 * 110.03131 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3757 7 6 1.9924 -0.4023 3.7282 8 7 1.6449 0.2772 4.7994 9 14 2.9627 -1.9888 3.9027 10 1 4.4162 -1.6853 3.8792 11 1 2.6145 -2.6431 5.1896 12 1 2.6289 -2.8995 2.7782 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4457 15 6 2.1247 -0.6271 -3.6672 16 6 1.7013 0.1904 -4.8893 17 6 2.2899 1.6002 -4.8058 18 7 1.9576 2.1933 -3.5036 19 6 2.9021 3.2634 -3.1561 20 6 0.5740 2.6866 -3.4875 21 6 0.1625 0.2641 -4.9685 22 6 -0.1432 0.1870 -6.4857 23 6 0.9091 -0.8285 -6.9959 24 6 2.1761 -0.5035 -6.1780 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2055 30 1 1.8915 -0.0461 5.6800 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 0.6527 0.1793 -2.4753 34 1 3.2116 -0.7049 -3.6405 35 1 1.6903 -1.6248 -3.7298 36 1 3.3731 1.5488 -4.9160 37 1 1.8725 2.2160 -5.6026 38 1 2.8624 4.0439 -3.9159 39 1 2.6334 3.6849 -2.1875 40 1 3.9115 2.8552 -3.1069 41 1 -0.1012 1.8666 -3.2427 42 1 0.4773 3.4727 -2.7386 43 1 0.3193 3.0864 -4.4689 44 1 -0.2873 -0.5799 -4.4455 45 1 -0.1962 1.2061 -4.5536 46 1 -0.0021 1.1594 -6.9574 47 1 -1.1535 -0.1828 -6.6609 48 1 1.0946 -0.6834 -8.0602 49 1 0.5804 -1.8492 -6.8007 50 1 2.8252 0.1644 -6.7443 51 1 2.7078 -1.4230 -5.9328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602618914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:50 Heat of formation + Delta-G solvation = 5.786156 kcal Electronic energy + Delta-G solvation = -24127.955144 eV Core-core repulsion = 21062.205030 eV Total energy + Delta-G solvation = -3065.750114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.90014 -36.49178 -36.19386 -33.65774 -31.97198 -30.27648 -29.18835 -27.44633 -27.19783 -26.31773 -25.13876 -23.42298 -21.73343 -21.56513 -20.62326 -19.09790 -18.50692 -16.74704 -15.98223 -15.87961 -15.35773 -14.86445 -14.63986 -14.37692 -13.85687 -13.83804 -13.57431 -13.31564 -12.99641 -12.70620 -12.51926 -12.34399 -12.22267 -11.98493 -11.73308 -11.58227 -11.57939 -11.44607 -11.26641 -10.92095 -10.86977 -10.77060 -10.64702 -10.51915 -10.32293 -10.22420 -10.18986 -9.77450 -9.53781 -9.26375 -8.94147 -8.44023 -8.11517 -7.30284 -5.94924 -3.90715 3.36934 3.43903 3.48646 4.07308 4.42025 4.48318 4.53757 4.63601 4.88365 5.08385 5.20703 5.28641 5.30526 5.38920 5.39330 5.41311 5.49592 5.55849 5.57546 5.66683 5.68876 5.75386 5.77199 5.79308 5.83057 5.90174 5.95392 5.97322 6.01848 6.11573 6.14217 6.16095 6.19414 6.28396 6.33630 6.35585 6.56946 6.65256 6.95655 7.13300 7.18863 7.31903 7.34656 7.43792 7.59506 7.73199 7.93225 8.03088 8.66372 9.11775 9.68893 11.18710 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.003844 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.420470 B = 7281.884650 C = 7674.306572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.508 4.508 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.908 5.908 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.643 5.643 15 C 0.084 3.916 16 C -0.054 4.054 17 C 0.078 3.922 18 N -0.494 5.494 19 C 0.031 3.969 20 C 0.023 3.977 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.115 4.115 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.010 0.990 33 H 0.331 0.669 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.008 0.992 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 1.193 -24.766 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.546 4.546 6 H 0.091 0.909 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.274 5.274 15 C -0.046 4.046 16 C -0.055 4.055 17 C -0.051 4.051 18 N -0.216 5.216 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.154 4.154 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.486 1.254 -24.164 24.201 hybrid contribution -0.074 -1.066 -0.388 1.137 sum -0.560 0.188 -24.552 24.559 Atomic orbital electron populations 1.21718 0.96634 1.00118 1.00515 1.20937 0.94803 1.00174 0.92920 0.91020 1.19608 0.95484 0.95945 0.93688 1.21164 1.34953 1.09371 0.89130 0.90879 1.25031 0.95781 0.96867 0.96002 1.69923 1.47550 1.39318 0.97952 0.86809 0.80672 0.84646 0.77309 1.20433 1.21620 1.19141 1.22138 0.99819 0.93913 0.90928 1.60694 1.18937 1.48180 0.99622 1.21833 0.99725 0.93204 0.89865 1.21245 0.95046 0.95085 0.94140 1.22134 0.99459 0.94086 0.89397 1.62010 1.01351 1.29927 1.28290 1.22380 0.97101 0.92403 0.99866 1.22695 0.91151 0.99599 0.99024 1.23061 0.95294 1.03477 0.95924 1.22496 0.98444 0.98927 0.96326 1.22338 0.95539 0.99250 0.98974 1.22207 0.97524 1.00272 0.95400 0.94769 0.91716 0.94467 0.97069 0.97291 0.92953 0.92168 0.97166 0.84909 0.91975 0.96919 0.91682 0.95594 0.97340 0.91349 0.91864 0.90745 0.92235 0.96317 0.92038 0.89044 0.91987 0.92011 0.92132 0.91883 0.91884 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.77 37.16 0.33 -2.17 16 2 C -0.07 -1.40 2.54 -90.62 -0.23 -1.63 16 3 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 4 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 5 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 9 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.64 -9.12 3.86 -113.78 -0.44 -9.56 16 15 C 0.08 1.03 4.27 -3.82 -0.02 1.02 16 16 C -0.05 -0.55 0.65 -153.39 -0.10 -0.65 16 17 C 0.08 0.81 4.00 -3.82 -0.02 0.80 16 18 N -0.49 -5.80 2.42 -251.26 -0.61 -6.40 16 19 C 0.03 0.36 9.39 60.07 0.56 0.92 16 20 C 0.02 0.25 7.99 60.07 0.48 0.73 16 21 C -0.14 -1.36 4.51 -25.04 -0.11 -1.47 16 22 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 23 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 24 C -0.12 -1.01 6.11 -25.61 -0.16 -1.17 16 25 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 26 H 0.06 1.37 6.95 -51.93 -0.36 1.01 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.33 4.62 4.45 -39.29 -0.18 4.45 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 36 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 37 H 0.03 0.26 7.56 -51.93 -0.39 -0.13 16 38 H 0.01 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 40 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 41 H 0.07 0.82 4.76 -51.93 -0.25 0.57 16 42 H 0.06 0.66 7.68 -51.92 -0.40 0.26 16 43 H 0.02 0.18 7.24 -51.93 -0.38 -0.19 16 44 H 0.06 0.65 7.76 -51.93 -0.40 0.24 16 45 H 0.09 0.89 3.40 -51.93 -0.18 0.72 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 51 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -29.93 369.14 -9.39 -39.32 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.88 Total: -0.47 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.13 Total: -18.41 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.27 Total: -43.63 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.93 -9.39 -39.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602618914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.103 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds