Wall clock time and date at job start Tue Mar 31 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47406 * 2 1 4 4 C 1.53004 * 109.47072 * 239.99712 * 2 1 3 5 5 C 1.50700 * 109.46810 * 65.00209 * 4 2 1 6 6 H 1.07993 * 120.00201 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99478 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99794 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00292 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46753 * 90.00254 * 9 7 5 11 11 H 1.48494 * 109.47258 * 210.00317 * 9 7 5 12 12 H 1.48499 * 109.47113 * 330.00430 * 9 7 5 13 13 C 1.53001 * 109.47127 * 119.99670 * 2 1 3 14 14 N 1.46897 * 109.47500 * 295.00073 * 13 2 1 15 15 C 1.46892 * 111.00603 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47640 * 180.02562 * 15 14 13 17 17 C 1.53002 * 110.01783 * 58.60299 * 16 15 14 18 18 N 1.46900 * 109.47269 * 307.45742 * 17 16 15 19 19 C 1.46898 * 110.99990 * 161.33662 * 18 17 16 20 20 C 1.46898 * 110.99873 * 285.29076 * 18 17 16 21 21 C 1.54272 * 110.03117 * 297.16607 * 16 15 14 22 22 C 1.54891 * 104.19343 * 264.32453 * 21 16 15 23 23 C 1.54892 * 102.74913 * 322.05723 * 22 21 16 24 24 C 1.53878 * 110.03750 * 179.97438 * 16 15 14 25 25 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47117 * 299.99948 * 1 2 3 27 27 H 1.08997 * 109.47266 * 60.00239 * 1 2 3 28 28 H 1.09002 * 109.46727 * 185.00024 * 4 2 1 29 29 H 1.09004 * 109.46875 * 304.99787 * 4 2 1 30 30 H 0.96999 * 119.99423 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47320 * 174.99953 * 13 2 1 32 32 H 1.08996 * 109.47083 * 55.00005 * 13 2 1 33 33 H 1.00901 * 110.99861 * 303.95410 * 14 13 2 34 34 H 1.09003 * 109.47499 * 59.99566 * 15 14 13 35 35 H 1.08999 * 109.47026 * 300.00081 * 15 14 13 36 36 H 1.09005 * 109.46655 * 67.45412 * 17 16 15 37 37 H 1.09001 * 109.47181 * 187.45425 * 17 16 15 38 38 H 1.09005 * 109.46741 * 60.00060 * 19 18 17 39 39 H 1.08991 * 109.47140 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.46880 * 300.00174 * 19 18 17 41 41 H 1.09001 * 109.46841 * 71.28980 * 20 18 17 42 42 H 1.08994 * 109.47343 * 191.28608 * 20 18 17 43 43 H 1.09003 * 109.47123 * 311.29175 * 20 18 17 44 44 H 1.08997 * 110.48896 * 145.64877 * 21 16 15 45 45 H 1.08993 * 110.48587 * 23.00099 * 21 16 15 46 46 H 1.09004 * 110.75232 * 203.74050 * 22 21 16 47 47 H 1.09000 * 110.75543 * 80.37287 * 22 21 16 48 48 H 1.09001 * 110.48692 * 156.62411 * 23 22 21 49 49 H 1.09004 * 110.48514 * 279.13035 * 23 22 21 50 50 H 1.08998 * 110.02709 * 0.02562 * 24 16 15 51 51 H 1.08996 * 110.03539 * 238.57203 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 1.6448 0.2771 -4.7994 9 14 2.9626 -1.9891 -3.9027 10 1 2.0233 -3.1334 -4.0188 11 1 3.8107 -1.9194 -5.1196 12 1 3.8250 -2.1758 -2.7083 13 6 2.0399 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1257 -0.6263 3.6672 16 6 1.7023 0.1911 4.8892 17 6 0.1795 0.3361 4.9203 18 7 -0.2893 0.8563 3.6289 19 6 -1.7245 0.6004 3.4480 20 6 0.0107 2.2884 3.4981 21 6 2.3660 1.5832 4.8496 22 6 3.6305 1.4263 5.7302 23 6 3.1378 0.5066 6.8750 24 6 2.1925 -0.4936 6.1771 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2950 30 1 1.8921 -0.0460 -5.6799 31 1 3.1262 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 1.9881 0.9874 2.3967 34 1 3.2127 -0.7036 3.6401 35 1 1.6921 -1.6243 3.7301 36 1 -0.2744 -0.6373 5.1063 37 1 -0.1036 1.0268 5.7146 38 1 -2.2840 1.0892 4.2457 39 1 -2.0453 0.9952 2.4841 40 1 -1.9089 -0.4734 3.4801 41 1 1.0840 2.4240 3.3650 42 1 -0.5164 2.6925 2.6339 43 1 -0.3128 2.8111 4.3982 44 1 1.6992 2.3358 5.2702 45 1 2.6424 1.8450 3.8283 46 1 3.9511 2.3919 6.1212 47 1 4.4345 0.9488 5.1701 48 1 3.9775 -0.0171 7.3319 49 1 2.5977 1.0859 7.6240 50 1 2.7324 -1.4081 5.9315 51 1 1.3457 -0.7216 6.8244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602618916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:53 Heat of formation + Delta-G solvation = 1.670468 kcal Electronic energy + Delta-G solvation = -24197.887655 eV Core-core repulsion = 21131.959072 eV Total energy + Delta-G solvation = -3065.928584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93107 -36.39066 -36.21672 -33.63760 -31.95319 -30.37512 -29.16583 -27.36092 -27.17176 -26.26089 -24.99924 -23.51514 -21.78176 -21.45481 -20.58734 -19.20702 -18.51684 -16.72733 -16.14997 -15.84088 -15.07861 -14.87416 -14.50263 -14.42571 -14.07167 -13.79944 -13.61605 -13.24741 -13.04265 -12.82017 -12.35995 -12.30450 -12.09220 -11.99885 -11.63591 -11.60115 -11.44923 -11.27975 -11.24081 -10.87992 -10.83931 -10.75096 -10.69387 -10.59995 -10.42501 -10.32868 -10.22343 -9.63358 -9.61624 -9.19699 -8.93256 -8.43904 -8.11052 -7.31144 -5.94675 -3.90379 3.36904 3.43799 3.48479 4.07879 4.39210 4.43574 4.53822 4.60897 4.89358 5.09979 5.17822 5.23311 5.32866 5.37685 5.39557 5.45034 5.47158 5.53802 5.57335 5.63170 5.68134 5.72820 5.77814 5.80566 5.83401 5.88054 5.95132 6.00003 6.06642 6.10109 6.14556 6.16618 6.25586 6.28352 6.30251 6.54689 6.65245 6.83723 7.03061 7.26822 7.32012 7.33037 7.35744 7.46831 7.61325 7.67688 7.93436 7.99771 8.66922 9.12216 9.69167 11.18993 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.003973 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.971319 B = 7045.424374 C = 7656.167344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.068 4.068 3 H 0.054 0.946 4 C -0.010 4.010 5 C -0.508 4.508 6 H 0.073 0.927 7 C 0.063 3.937 8 N -0.908 5.908 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.642 5.642 15 C 0.085 3.915 16 C -0.056 4.056 17 C 0.077 3.923 18 N -0.491 5.491 19 C 0.030 3.970 20 C 0.021 3.979 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.115 4.115 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.011 0.989 32 H 0.060 0.940 33 H 0.329 0.671 34 H 0.014 0.986 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.008 0.992 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.010 0.990 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 1.053 24.885 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.048 4.048 5 C -0.546 4.546 6 H 0.091 0.909 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.068 4.068 14 N -0.273 5.273 15 C -0.045 4.045 16 C -0.057 4.057 17 C -0.051 4.051 18 N -0.213 5.213 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.154 4.154 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.028 0.972 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.888 0.516 24.334 24.356 hybrid contribution 1.049 -0.315 0.282 1.131 sum 0.161 0.201 24.616 24.617 Atomic orbital electron populations 1.21588 0.95240 1.00339 1.00775 1.20906 0.96422 0.98552 0.92764 0.92763 1.19629 0.95513 0.95865 0.93813 1.21165 1.34819 1.09450 0.89133 0.90889 1.25033 0.95758 0.96895 0.95998 1.69924 1.47531 1.39365 0.97939 0.86808 0.80660 0.84503 0.77467 1.20432 1.21616 1.19166 1.22151 0.96011 0.97902 0.90752 1.60714 1.62629 1.04321 0.99625 1.21785 0.95490 0.97369 0.89884 1.21262 0.94857 0.95071 0.94476 1.22122 0.94186 0.99161 0.89639 1.62016 1.14241 1.14542 1.30529 1.22362 0.88161 1.01190 1.00162 1.22699 1.02661 0.88094 0.99273 1.22728 0.96257 0.96674 0.99691 1.22552 0.97967 0.99257 0.96821 1.22332 0.98711 0.97385 0.97592 1.22207 0.98886 0.98468 0.95793 0.94787 0.92380 0.93141 0.97236 0.97249 0.92960 0.97128 0.92168 0.85107 0.96792 0.91872 0.91614 0.95863 0.97388 0.91383 0.91944 0.90697 0.91969 0.97175 0.91551 0.91147 0.91929 0.91654 0.92040 0.91990 0.91597 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.15 0.33 -2.05 16 2 C -0.07 -1.36 2.48 -90.62 -0.22 -1.58 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.01 -0.25 3.52 -27.88 -0.10 -0.35 16 5 C -0.51 -14.65 8.96 -34.44 -0.31 -14.96 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 9 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 C 0.06 1.03 5.07 -3.83 -0.02 1.01 16 14 N -0.64 -8.83 3.27 -113.79 -0.37 -9.20 16 15 C 0.08 1.01 4.39 -3.83 -0.02 0.99 16 16 C -0.06 -0.54 0.64 -153.39 -0.10 -0.64 16 17 C 0.08 0.79 3.91 -3.82 -0.01 0.77 16 18 N -0.49 -5.58 2.54 -251.26 -0.64 -6.22 16 19 C 0.03 0.33 9.49 60.06 0.57 0.90 16 20 C 0.02 0.23 7.80 60.06 0.47 0.70 16 21 C -0.12 -1.08 3.83 -25.07 -0.10 -1.18 16 22 C -0.13 -1.09 6.91 -24.74 -0.17 -1.26 16 23 C -0.12 -0.96 6.83 -25.05 -0.17 -1.13 16 24 C -0.11 -0.97 6.12 -25.59 -0.16 -1.13 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.01 0.23 7.20 -51.93 -0.37 -0.14 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.33 4.51 5.36 -39.29 -0.21 4.30 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 37 H 0.02 0.23 7.65 -51.93 -0.40 -0.16 16 38 H 0.01 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 40 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.07 0.80 3.84 -51.93 -0.20 0.60 16 42 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 43 H 0.01 0.10 7.70 -51.93 -0.40 -0.30 16 44 H 0.07 0.61 6.59 -51.93 -0.34 0.27 16 45 H 0.07 0.72 5.10 -51.93 -0.26 0.46 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 51 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -29.97 370.17 -9.42 -39.38 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -9.98 Total: -1.36 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -0.10 Total: -18.13 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.24 Total: -43.17 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.97 -9.42 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602618916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.054 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds