Wall clock time and date at job start Tue Mar 31 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46710 * 2 1 4 4 C 1.53000 * 109.47708 * 119.99890 * 2 1 3 5 5 C 1.50702 * 109.47117 * 295.00793 * 4 2 1 6 6 H 1.07999 * 119.99644 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99903 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00194 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47057 * 60.00019 * 9 7 5 11 11 H 1.48498 * 109.47506 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47285 * 300.00195 * 9 7 5 13 13 C 1.53004 * 109.47430 * 240.00465 * 2 1 3 14 14 N 1.46894 * 109.47091 * 64.65809 * 13 2 1 15 15 C 1.46902 * 110.99926 * 72.29253 * 14 13 2 16 16 C 1.53005 * 109.47042 * 197.04556 * 15 14 13 17 17 N 1.46899 * 109.47077 * 185.08107 * 16 15 14 18 18 C 1.46900 * 111.00048 * 170.00289 * 17 16 15 19 19 C 1.46908 * 110.99811 * 293.95261 * 17 16 15 20 20 C 1.46902 * 110.99924 * 196.24365 * 14 13 2 21 21 C 1.55229 * 110.58242 * 64.55020 * 20 14 13 22 22 C 1.54884 * 102.59007 * 203.33980 * 21 20 14 23 23 C 1.54264 * 104.31276 * 37.92876 * 22 21 20 24 24 C 1.53869 * 106.59963 * 336.32469 * 23 22 21 25 25 H 1.09004 * 109.47335 * 305.00676 * 1 2 3 26 26 H 1.09002 * 109.47426 * 65.00961 * 1 2 3 27 27 H 1.09005 * 109.46870 * 185.00966 * 1 2 3 28 28 H 1.08999 * 109.46386 * 55.00242 * 4 2 1 29 29 H 1.08997 * 109.47324 * 175.00156 * 4 2 1 30 30 H 0.97000 * 120.00243 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46446 * 304.66007 * 13 2 1 32 32 H 1.08999 * 109.46980 * 184.66063 * 13 2 1 33 33 H 1.08998 * 109.47273 * 317.04159 * 15 14 13 34 34 H 1.09003 * 109.47195 * 77.04512 * 15 14 13 35 35 H 1.08997 * 109.47258 * 305.07951 * 16 15 14 36 36 H 1.09000 * 109.47369 * 65.08058 * 16 15 14 37 37 H 1.08997 * 109.47249 * 59.99943 * 18 17 16 38 38 H 1.08999 * 109.46786 * 179.97438 * 18 17 16 39 39 H 1.08998 * 109.46749 * 299.99382 * 18 17 16 40 40 H 1.08997 * 109.47006 * 60.00126 * 19 17 16 41 41 H 1.09003 * 109.46838 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.46903 * 300.00081 * 19 17 16 43 43 H 1.09002 * 110.43311 * 187.13466 * 20 14 13 44 44 H 1.09001 * 110.90063 * 85.04422 * 21 20 14 45 45 H 1.09005 * 110.76472 * 321.57014 * 21 20 14 46 46 H 1.08995 * 110.48851 * 279.18370 * 22 21 20 47 47 H 1.08998 * 110.48973 * 156.67421 * 22 21 20 48 48 H 1.09001 * 110.03411 * 95.61192 * 23 22 21 49 49 H 1.09006 * 110.03588 * 216.99199 * 23 22 21 50 50 H 1.09004 * 110.03498 * 119.28239 * 24 23 22 51 51 H 1.09002 * 110.03509 * 240.66530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0805 0.9744 2.3756 7 6 1.9924 -0.4023 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4987 0.5627 5.2496 10 1 0.0188 0.6702 5.3090 11 1 1.9927 -0.1379 6.4622 12 1 2.0916 1.9228 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6444 0.0333 -2.4460 15 6 2.4286 1.2690 -2.5724 16 6 1.7300 2.2189 -3.5474 17 7 2.5730 3.4016 -3.7676 18 6 2.0531 4.2208 -4.8706 19 6 2.6994 4.1945 -2.5373 20 6 1.7667 -0.7937 -3.6540 21 6 0.7741 -1.9860 -3.6019 22 6 1.4310 -3.0141 -4.5560 23 6 2.9434 -2.8716 -4.2873 24 6 3.1569 -1.4598 -3.7138 25 1 -0.3634 0.5896 0.8418 26 1 -0.3634 0.4342 -0.9315 27 1 -0.3633 -1.0238 0.0897 28 1 1.6055 -1.7197 1.2950 29 1 3.1264 -0.7994 1.2055 30 1 2.9216 -1.8430 4.7318 31 1 1.6101 -1.7219 -1.2920 32 1 3.1268 -0.7940 -1.2085 33 1 2.5127 1.7474 -1.5966 34 1 3.4240 1.0309 -2.9474 35 1 1.5649 1.7087 -4.4963 36 1 0.7719 2.5283 -3.1297 37 1 1.0422 4.5516 -4.6324 38 1 2.6956 5.0898 -5.0119 39 1 2.0355 3.6288 -5.7857 40 1 3.1516 3.5835 -1.7562 41 1 3.3280 5.0642 -2.7286 42 1 1.7118 4.5243 -2.2146 43 1 1.5933 -0.1920 -4.5462 44 1 -0.2084 -1.6903 -3.9699 45 1 0.7044 -2.3869 -2.5907 46 1 1.2034 -2.7712 -5.5938 47 1 1.0950 -4.0235 -4.3190 48 1 3.2665 -3.6209 -3.5646 49 1 3.5003 -2.9857 -5.2173 50 1 3.5835 -1.5239 -2.7128 51 1 3.8179 -0.8882 -4.3652 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602624745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:15 Heat of formation + Delta-G solvation = -12.992324 kcal Electronic energy + Delta-G solvation = -23841.499575 eV Core-core repulsion = 20774.935165 eV Total energy + Delta-G solvation = -3066.564410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.50333 -37.39774 -35.88672 -33.85545 -31.95123 -29.46932 -28.62945 -27.66177 -27.39889 -26.52648 -25.15735 -23.44988 -22.38111 -21.08041 -20.35894 -19.48804 -18.36562 -16.42243 -16.07031 -15.85561 -15.41302 -15.20411 -14.85985 -14.44859 -14.11875 -13.88865 -13.60195 -13.33648 -13.08872 -12.69295 -12.40642 -12.28340 -12.08869 -11.77482 -11.75029 -11.53464 -11.39086 -11.27013 -11.12939 -11.08013 -10.97944 -10.82646 -10.73504 -10.64577 -10.35504 -10.21309 -10.18895 -10.07496 -9.50188 -9.07103 -8.92385 -8.41905 -8.29453 -7.87047 -5.94554 -3.95434 3.35927 3.40335 3.42775 3.74876 4.34517 4.51022 4.69689 4.77024 4.87944 5.07394 5.10326 5.25755 5.34638 5.40997 5.43020 5.45341 5.49235 5.58360 5.60205 5.63230 5.70360 5.71054 5.76047 5.79607 5.91937 5.93012 5.95322 5.99958 6.07869 6.10133 6.14821 6.24703 6.31151 6.34798 6.43026 6.50259 6.65035 6.76837 6.94343 6.97870 7.07777 7.21410 7.25940 7.52279 7.52710 7.73175 7.90069 8.05991 8.50500 9.10769 9.67728 11.16950 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.004856 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.550585 B = 5764.747519 C = 7461.092506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.059 3.941 14 N -0.527 5.527 15 C 0.056 3.944 16 C 0.062 3.938 17 N -0.550 5.550 18 C 0.027 3.973 19 C 0.021 3.979 20 C 0.081 3.919 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.163 4.163 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.027 0.973 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 4.099 -19.082 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.068 4.068 14 N -0.249 5.249 15 C -0.073 4.073 16 C -0.066 4.066 17 N -0.274 5.274 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.028 4.028 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.202 4.202 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.243 3.964 -19.018 19.467 hybrid contribution -0.083 0.533 1.074 1.202 sum -1.325 4.497 -17.945 18.547 Atomic orbital electron populations 1.21562 0.95893 1.00535 0.99833 1.21205 0.95840 0.98905 0.93807 0.92890 1.19120 0.95824 0.95506 0.90506 1.21190 1.34536 1.08211 0.91000 0.92737 1.25004 0.95367 0.95080 0.99013 1.69952 1.39141 1.21200 1.23408 0.86718 0.78890 0.80129 0.82610 1.20306 1.21391 1.20350 1.22362 0.97616 0.97536 0.89310 1.62061 1.55333 1.05235 1.02288 1.22061 0.94816 0.90665 0.99725 1.22079 0.94362 0.90704 0.99495 1.61951 1.50786 1.08129 1.06526 1.22343 0.97906 0.97521 0.94409 1.22450 1.00274 0.97832 0.92207 1.22666 0.93220 0.93621 0.93308 1.22643 0.97973 0.94596 1.00274 1.22336 0.95280 0.99316 0.99323 1.22034 0.96337 0.97039 1.00360 1.22878 0.99051 0.96304 1.01994 0.93224 0.93811 0.94256 0.96674 0.97055 0.93091 0.90877 0.94998 0.90237 0.94087 0.91181 0.94075 0.95769 0.91579 0.91628 0.90729 0.91713 0.95464 0.90192 0.91491 0.90448 0.92032 0.91814 0.91963 0.92390 0.90737 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.86 37.15 0.33 -2.03 16 2 C -0.08 -1.61 2.35 -90.62 -0.21 -1.82 16 3 H 0.05 1.11 6.44 -51.92 -0.33 0.78 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.35 8.47 -34.44 -0.29 -14.64 16 6 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.01 3.23 -3.83 -0.01 1.00 16 14 N -0.53 -7.66 3.76 -224.44 -0.84 -8.50 16 15 C 0.06 0.78 4.52 -3.82 -0.02 0.76 16 16 C 0.06 0.77 5.11 -3.82 -0.02 0.75 16 17 N -0.55 -6.49 5.02 -251.25 -1.26 -7.75 16 18 C 0.03 0.25 9.57 60.06 0.57 0.83 16 19 C 0.02 0.24 9.32 60.07 0.56 0.80 16 20 C 0.08 1.01 2.80 -65.87 -0.18 0.83 16 21 C -0.12 -1.41 6.41 -24.56 -0.16 -1.56 16 22 C -0.12 -1.29 6.82 -25.08 -0.17 -1.46 16 23 C -0.12 -1.31 6.80 -25.62 -0.17 -1.48 16 24 C -0.16 -2.01 5.40 -25.62 -0.14 -2.15 16 25 H 0.05 1.03 7.10 -51.93 -0.37 0.66 16 26 H 0.04 0.77 7.61 -51.93 -0.40 0.38 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 1.27 5.82 -51.93 -0.30 0.97 16 32 H 0.03 0.57 6.49 -51.93 -0.34 0.24 16 33 H 0.08 1.25 4.90 -51.93 -0.25 1.00 16 34 H 0.04 0.59 7.35 -51.93 -0.38 0.21 16 35 H 0.07 0.83 6.45 -51.93 -0.33 0.49 16 36 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16 41 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.95 6.45 -51.93 -0.34 0.62 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.06 5.99 -51.93 -0.31 0.75 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.07 1.06 5.49 -51.93 -0.28 0.77 16 51 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -29.15 376.58 -10.68 -39.83 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -9.82 Total: -1.62 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -0.14 Total: -18.09 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -1.37 Total: -42.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.15 -10.68 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602624745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.835 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds