Wall clock time and date at job start Tue Mar 31 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.53003 * 109.47295 * 239.99653 * 2 1 3 5 5 C 1.50704 * 109.46714 * 65.00028 * 4 2 1 6 6 H 1.08007 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99742 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00408 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99666 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46887 * 60.00216 * 9 7 5 11 11 H 1.48499 * 109.46830 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47313 * 299.99895 * 9 7 5 13 13 C 1.53005 * 109.47086 * 119.99844 * 2 1 3 14 14 N 1.46894 * 109.47242 * 295.00191 * 13 2 1 15 15 C 1.46894 * 111.00033 * 170.00060 * 14 13 2 16 16 C 1.53008 * 109.47164 * 188.20766 * 15 14 13 17 17 N 1.46905 * 109.46791 * 174.32773 * 16 15 14 18 18 C 1.46901 * 110.99983 * 66.04714 * 17 16 15 19 19 C 1.46900 * 110.99370 * 189.99791 * 17 16 15 20 20 C 1.46904 * 111.00106 * 293.95121 * 14 13 2 21 21 C 1.55229 * 110.47011 * 269.72964 * 20 14 13 22 22 C 1.54887 * 102.58642 * 203.39248 * 21 20 14 23 23 C 1.54262 * 104.31436 * 37.92946 * 22 21 20 24 24 C 1.53876 * 106.59922 * 336.32173 * 23 22 21 25 25 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47222 * 300.00059 * 1 2 3 27 27 H 1.08993 * 109.47118 * 60.00266 * 1 2 3 28 28 H 1.08999 * 109.47350 * 184.99788 * 4 2 1 29 29 H 1.08997 * 109.46965 * 305.00640 * 4 2 1 30 30 H 0.97002 * 120.00320 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47019 * 174.99800 * 13 2 1 32 32 H 1.09001 * 109.46982 * 55.00200 * 13 2 1 33 33 H 1.09001 * 109.47421 * 308.20918 * 15 14 13 34 34 H 1.09003 * 109.47493 * 68.20769 * 15 14 13 35 35 H 1.09000 * 109.46917 * 294.32312 * 16 15 14 36 36 H 1.08995 * 109.46864 * 54.32642 * 16 15 14 37 37 H 1.09000 * 109.47009 * 60.00008 * 18 17 16 38 38 H 1.09007 * 109.46639 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.47270 * 299.99371 * 18 17 16 40 40 H 1.08999 * 109.47223 * 60.00366 * 19 17 16 41 41 H 1.09004 * 109.46823 * 179.97438 * 19 17 16 42 42 H 1.09001 * 109.47589 * 300.00099 * 19 17 16 43 43 H 1.09007 * 110.42775 * 32.37541 * 20 14 13 44 44 H 1.09000 * 110.90382 * 85.09722 * 21 20 14 45 45 H 1.09001 * 110.76824 * 321.61666 * 21 20 14 46 46 H 1.09001 * 110.48513 * 279.18352 * 22 21 20 47 47 H 1.09002 * 110.49213 * 156.67437 * 22 21 20 48 48 H 1.09000 * 110.03602 * 95.60734 * 23 22 21 49 49 H 1.09005 * 110.03391 * 216.99414 * 23 22 21 50 50 H 1.09006 * 110.02956 * 119.28489 * 24 23 22 51 51 H 1.08994 * 110.03612 * 240.67044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6755 -1.5193 -3.8512 9 14 1.4988 0.5628 -5.2496 10 1 2.0920 1.9227 -5.1871 11 1 1.9937 -0.1373 -6.4621 12 1 0.0189 0.6705 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4456 15 6 1.9124 -0.7357 3.6671 16 6 1.3118 -0.0063 4.8705 17 7 1.4530 -0.8423 6.0702 18 6 2.8669 -1.0087 6.4324 19 6 0.6840 -0.2873 7.1920 20 6 2.3341 1.3374 2.4895 21 6 3.6819 1.2174 3.2502 22 6 3.9342 2.6711 3.7213 23 6 2.5352 3.1962 4.1044 24 6 1.5178 2.3482 3.3211 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.1264 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9228 -1.8422 -4.7318 31 1 3.1263 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 1.4584 -1.7225 3.5766 34 1 2.9882 -0.8423 3.8067 35 1 1.8355 0.9376 5.0217 36 1 0.2555 0.1896 4.6864 37 1 3.3079 -0.0323 6.6329 38 1 2.9427 -1.6313 7.3240 39 1 3.3991 -1.4858 5.6095 40 1 -0.3708 -0.2399 6.9213 41 1 0.8057 -0.9257 8.0671 42 1 1.0460 0.7153 7.4200 43 1 2.4961 1.7163 1.4803 44 1 4.4767 0.8840 2.5830 45 1 3.5856 0.5461 4.1036 46 1 4.3567 3.2665 2.9119 47 1 4.5961 2.6822 4.5873 48 1 2.3728 3.0788 5.1758 49 1 2.4410 4.2457 3.8254 50 1 0.8616 1.8193 4.0125 51 1 0.9290 2.9860 2.6619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602624746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:17 Heat of formation + Delta-G solvation = 1.822702 kcal Electronic energy + Delta-G solvation = -24053.447052 eV Core-core repulsion = 20987.525069 eV Total energy + Delta-G solvation = -3065.921982 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96999 -37.15227 -36.01075 -33.87521 -32.00213 -29.42377 -28.85252 -27.69694 -27.59818 -26.64242 -25.06743 -23.55956 -22.22631 -21.19299 -20.26761 -19.79376 -18.39914 -16.65517 -16.18006 -15.97932 -15.27415 -15.07671 -14.86874 -14.60648 -14.24760 -14.04186 -13.60382 -13.27955 -13.00028 -12.60352 -12.56753 -12.30687 -12.06152 -11.83327 -11.81998 -11.77121 -11.37843 -11.22801 -11.11983 -11.03092 -10.89530 -10.81115 -10.75480 -10.63935 -10.38450 -10.30415 -10.23429 -10.13230 -9.48485 -9.07636 -8.91635 -8.45361 -8.29197 -7.86935 -5.94320 -3.95250 3.36419 3.40683 3.43231 3.68648 4.27716 4.50886 4.67706 4.72348 4.87965 4.97798 5.05275 5.09900 5.19482 5.35977 5.40821 5.41586 5.43320 5.46342 5.51306 5.59391 5.65033 5.67120 5.70271 5.73581 5.77587 5.87381 5.90041 5.96176 6.04137 6.05269 6.10875 6.22135 6.25012 6.39194 6.40276 6.47098 6.64468 6.76636 6.86185 6.89985 7.08278 7.22080 7.27434 7.48373 7.53879 7.73594 7.90189 8.06272 8.50519 9.10996 9.67886 11.17205 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.003764 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.657653 B = 7437.270036 C = 7874.964909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.525 5.525 15 C 0.052 3.948 16 C 0.048 3.952 17 N -0.549 5.549 18 C 0.022 3.978 19 C 0.027 3.973 20 C 0.077 3.923 21 C -0.167 4.167 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.128 4.128 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 5.241 21.525 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.248 5.248 15 C -0.076 4.076 16 C -0.079 4.079 17 N -0.274 5.274 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.032 4.032 21 C -0.205 4.205 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.697 4.727 21.247 21.777 hybrid contribution 1.065 1.085 -0.724 1.684 sum 0.367 5.812 20.522 21.333 Atomic orbital electron populations 1.21568 0.95775 1.00479 1.00077 1.21239 0.95964 0.98919 0.93746 0.92653 1.19118 0.95826 0.95573 0.90475 1.21201 1.34575 1.08227 0.91000 0.92669 1.25010 0.95369 0.95083 0.99036 1.69951 1.39100 1.21242 1.23424 0.86709 0.78918 0.80106 0.82571 1.20356 1.21403 1.20260 1.22289 0.97561 0.97179 0.89431 1.62094 1.57423 1.03427 1.01861 1.22168 0.98545 0.97551 0.89328 1.22619 1.01949 0.94328 0.89019 1.61908 1.10291 1.50299 1.04885 1.22432 0.88739 0.99934 1.01576 1.22345 0.98651 0.97482 0.93672 1.22734 0.90470 0.90267 0.99721 1.23388 0.98976 0.97144 1.01021 1.22247 0.96727 0.96335 1.00522 1.22119 0.95088 0.99524 0.99399 1.22511 0.97953 0.97097 0.99016 0.94243 0.93898 0.92936 0.97042 0.96602 0.93080 0.95392 0.91304 0.90381 0.94226 0.93047 0.89989 0.95845 0.91651 0.91177 0.91324 0.91588 0.95909 0.88895 0.91725 0.90315 0.91610 0.92374 0.92636 0.92017 0.90110 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.64 2.28 -90.62 -0.21 -1.85 16 3 H 0.06 1.16 6.13 -51.93 -0.32 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.09 4.33 -3.82 -0.02 1.08 16 14 N -0.53 -7.69 3.96 -224.44 -0.89 -8.58 16 15 C 0.05 0.67 4.21 -3.82 -0.02 0.65 16 16 C 0.05 0.54 3.06 -3.82 -0.01 0.53 16 17 N -0.55 -5.75 5.02 -251.25 -1.26 -7.01 16 18 C 0.02 0.20 9.28 60.07 0.56 0.76 16 19 C 0.03 0.23 9.57 60.06 0.57 0.81 16 20 C 0.08 1.05 2.69 -65.87 -0.18 0.88 16 21 C -0.17 -2.02 5.41 -24.56 -0.13 -2.16 16 22 C -0.12 -1.27 6.82 -25.08 -0.17 -1.44 16 23 C -0.12 -1.26 6.27 -25.61 -0.16 -1.42 16 24 C -0.13 -1.51 5.65 -25.61 -0.14 -1.66 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 33 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 34 H 0.04 0.50 4.41 -51.93 -0.23 0.28 16 35 H 0.05 0.57 4.00 -51.93 -0.21 0.36 16 36 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.07 0.67 6.60 -51.93 -0.34 0.33 16 40 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 1.48 5.85 -51.93 -0.30 1.18 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.92 4.39 -51.93 -0.23 0.69 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.94 4.46 -51.93 -0.23 0.71 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -29.25 370.86 -10.59 -39.85 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -9.66 Total: -1.74 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.09 Total: -18.50 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -1.41 Total: -42.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.25 -10.59 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602624746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.668 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds