Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47369 * 2 1 4 4 C 1.34775 * 120.00033 * 179.97438 * 3 2 1 5 5 O 1.21274 * 120.00022 * 354.90075 * 4 3 2 6 6 C 1.50694 * 119.99618 * 174.89689 * 4 3 2 7 7 C 1.52999 * 112.85206 * 55.45707 * 6 4 3 8 8 N 1.46902 * 109.46879 * 64.84252 * 7 6 4 9 9 C 1.46906 * 110.99799 * 175.07181 * 8 7 6 10 10 C 1.53004 * 109.46962 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.47255 * 54.99806 * 10 9 8 12 12 C 1.53000 * 109.47132 * 294.99895 * 10 9 8 13 13 C 1.53002 * 109.46797 * 174.99863 * 10 9 8 14 14 C 1.50704 * 109.46691 * 184.99782 * 13 10 9 15 15 H 1.07997 * 120.00430 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99543 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99558 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00247 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47269 * 89.99571 * 18 16 14 20 20 H 1.48498 * 109.47168 * 209.99818 * 18 16 14 21 21 H 1.48499 * 109.47019 * 329.99816 * 18 16 14 22 22 C 1.53778 * 113.61931 * 284.25892 * 6 4 3 23 23 C 1.53956 * 87.02107 * 220.05063 * 22 6 4 24 24 C 1.53784 * 87.11136 * 25.36326 * 23 22 6 25 25 H 1.09001 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47122 * 299.99747 * 1 2 3 27 27 H 1.08997 * 109.46958 * 60.00105 * 1 2 3 28 28 H 1.09008 * 109.46924 * 239.99895 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00439 * 2 1 3 30 30 H 0.97002 * 119.99706 * 359.72190 * 3 2 1 31 31 H 1.08999 * 109.47642 * 184.83797 * 7 6 4 32 32 H 1.08997 * 109.47207 * 304.84132 * 7 6 4 33 33 H 1.00896 * 111.00578 * 51.11819 * 8 7 6 34 34 H 1.09001 * 109.47306 * 299.99831 * 9 8 7 35 35 H 1.09004 * 109.47119 * 60.00285 * 9 8 7 36 36 H 1.08997 * 109.46978 * 300.00080 * 12 10 9 37 37 H 1.09001 * 109.46939 * 60.00016 * 12 10 9 38 38 H 1.08996 * 109.47128 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47535 * 305.00126 * 13 10 9 40 40 H 1.08998 * 109.46782 * 65.00250 * 13 10 9 41 41 H 0.97002 * 119.99707 * 180.02562 * 17 16 14 42 42 H 1.09007 * 113.61321 * 334.56601 * 22 6 4 43 43 H 1.08996 * 113.61977 * 105.46914 * 22 6 4 44 44 H 1.08999 * 113.53842 * 270.80465 * 23 22 6 45 45 H 1.09005 * 113.66673 * 139.92756 * 23 22 6 46 46 H 1.08995 * 113.61071 * 220.09448 * 24 23 22 47 47 H 1.08997 * 113.61496 * 89.18791 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1307 0.7097 0.0943 6 6 3.8468 3.0431 -0.1156 7 6 3.2724 3.9679 0.9595 8 7 3.7434 3.5337 2.2815 9 6 3.3072 4.4673 3.3285 10 6 3.8151 3.9825 4.6879 11 1 4.8962 3.8508 4.6460 12 6 3.1517 2.6478 5.0337 13 6 3.4685 5.0173 5.7603 14 6 4.0745 4.5998 7.0755 15 1 4.6496 3.6880 7.1399 16 6 3.8955 5.3827 8.1963 17 7 4.4247 5.0186 9.3439 18 14 2.9014 6.9602 8.0848 19 1 1.4733 6.6664 8.3664 20 1 3.4111 7.9379 9.0796 21 1 3.0296 7.5305 6.7197 22 6 3.7482 3.6173 -1.5387 23 6 5.1230 4.2629 -1.2870 24 6 5.3743 3.1437 -0.2627 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3881 2.1185 -0.0041 31 1 3.6026 4.9900 0.7739 32 1 2.1836 3.9269 0.9302 33 1 4.7463 3.4239 2.2900 34 1 3.7103 5.4588 3.1222 35 1 2.2182 4.5136 3.3433 36 1 2.0706 2.7796 5.0757 37 1 3.3986 1.9107 4.2697 38 1 3.5132 2.3027 6.0024 39 1 3.8663 5.9895 5.4693 40 1 2.3856 5.0841 5.8642 41 1 4.2985 5.5692 10.1326 42 1 3.7598 2.8557 -2.3186 43 1 2.9417 4.3398 -1.6633 44 1 5.0626 5.2563 -0.8424 45 1 5.7893 4.2236 -2.1488 46 1 5.8785 3.4846 0.6415 47 1 5.8311 2.2525 -0.6930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -41.138612 kcal Electronic energy + Delta-G solvation = -22907.661223 eV Core-core repulsion = 19704.043204 eV Total energy + Delta-G solvation = -3203.618019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80647 -38.11305 -36.63671 -35.30067 -33.74909 -31.94223 -30.84053 -28.28303 -27.14896 -25.99031 -25.27497 -23.72003 -22.95315 -21.85730 -21.06578 -19.30914 -18.65679 -17.39887 -16.73693 -16.22659 -15.83746 -15.48407 -14.93817 -14.78361 -14.53034 -14.15153 -13.94334 -13.66733 -13.16677 -12.99426 -12.80296 -12.59326 -12.34474 -12.26790 -12.05263 -11.86704 -11.67331 -11.61487 -11.58865 -11.31306 -10.95477 -10.75949 -10.72558 -10.54708 -10.40138 -9.78675 -9.72875 -9.60657 -9.39054 -9.11156 -9.03981 -8.50307 -8.21380 -6.00294 -3.97126 2.67899 3.14177 3.31658 3.38997 3.42083 3.99365 4.21179 4.45688 4.47723 4.54357 4.70163 4.73691 4.88316 4.92051 5.12139 5.18447 5.33059 5.33910 5.37207 5.52360 5.53914 5.58491 5.60539 5.65699 5.72953 5.74936 5.84037 5.85023 5.93206 6.03746 6.16355 6.29792 6.39467 6.42876 6.61308 6.85112 7.05709 7.15848 7.22725 7.32559 7.45725 7.47043 7.56757 7.84444 8.25189 8.59614 9.05968 9.62440 11.13247 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.003641 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.286092 B = 7689.159395 C = 8394.190235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.728 5.728 4 C 0.546 3.454 5 O -0.540 6.540 6 C -0.106 4.106 7 C 0.085 3.915 8 N -0.685 5.685 9 C 0.063 3.937 10 C -0.074 4.074 11 H 0.060 0.940 12 C -0.123 4.123 13 C -0.008 4.008 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.267 1.267 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.113 4.113 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -3.478 -24.867 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.381 5.381 4 C 0.332 3.668 5 O -0.416 6.416 6 C -0.110 4.110 7 C -0.045 4.045 8 N -0.316 5.316 9 C -0.065 4.065 10 C -0.093 4.093 11 H 0.078 0.922 12 C -0.181 4.181 13 C -0.046 4.046 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.192 1.192 22 C -0.159 4.159 23 C -0.179 4.179 24 C -0.151 4.151 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.232 0.768 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.144 -4.549 -24.515 25.680 hybrid contribution -0.368 1.977 0.053 2.012 sum -6.512 -2.571 -24.463 25.445 Atomic orbital electron populations 1.21999 0.94619 1.03093 1.02505 1.21253 0.94085 0.83342 1.02182 1.45942 1.07283 1.08548 1.76286 1.20081 0.81867 0.90367 0.74495 1.90671 1.55563 1.46312 1.49087 1.22212 0.98773 0.93002 0.96974 1.21675 0.99719 0.95064 0.88050 1.60492 1.18601 1.50240 1.02314 1.22178 1.00167 0.92392 0.91802 1.21005 0.99420 0.96810 0.92020 0.92200 1.21584 0.99193 0.96406 1.00890 1.19607 0.96208 0.94130 0.94667 1.21143 1.32865 1.09374 0.91650 0.90825 1.25034 0.95504 0.97707 0.95371 1.69921 1.45574 1.38880 1.00074 0.86797 0.80633 0.83944 0.77986 1.20390 1.21507 1.19181 1.22919 0.98608 1.00016 0.94309 1.22885 0.96800 0.98508 0.99702 1.22823 0.93236 0.99322 0.99734 0.90948 0.91740 0.92231 0.92017 0.91369 0.76779 0.94149 0.90890 0.83900 0.95731 0.91594 0.94351 0.93700 0.92274 0.96985 0.97107 0.92850 0.89686 0.90628 0.89879 0.90987 0.90873 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.03 37.16 0.37 -0.70 16 2 C 0.12 1.08 6.40 -4.04 -0.03 1.05 16 3 N -0.73 -7.29 5.50 -60.29 -0.33 -7.62 16 4 C 0.55 6.87 6.68 -10.99 -0.07 6.80 16 5 O -0.54 -8.96 15.97 5.56 0.09 -8.87 16 6 C -0.11 -1.08 0.91 -154.85 -0.14 -1.22 16 7 C 0.08 0.90 4.92 -3.82 -0.02 0.88 16 8 N -0.68 -9.41 5.81 -113.77 -0.66 -10.07 16 9 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 10 C -0.07 -1.46 2.48 -90.62 -0.22 -1.68 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 14 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 15 H 0.07 2.27 7.30 -52.49 -0.38 1.88 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C -0.12 -0.93 7.23 -25.83 -0.19 -1.12 16 23 C -0.14 -1.12 7.74 -25.82 -0.20 -1.32 16 24 C -0.11 -1.17 6.75 -25.91 -0.17 -1.35 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.40 3.12 7.69 -40.82 -0.31 2.81 16 31 H 0.04 0.41 7.30 -51.93 -0.38 0.03 16 32 H 0.07 0.71 7.40 -51.93 -0.38 0.32 16 33 H 0.34 4.81 7.23 -39.29 -0.28 4.53 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.83 7.75 -51.93 -0.40 0.42 16 38 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 39 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.08 0.66 8.09 -51.92 -0.42 0.24 16 43 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.08 0.63 7.61 -51.93 -0.40 0.24 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 47 H 0.09 1.09 7.53 -51.93 -0.39 0.70 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -32.94 368.83 -8.76 -41.70 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.65 Total: 2.69 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.87 Total: -13.19 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.22 Total: -45.09 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.94 -8.76 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.561 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds