Wall clock time and date at job start Tue Mar 31 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47554 * 2 1 4 4 C 1.34780 * 120.00378 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99800 * 354.96189 * 4 3 2 6 6 C 1.50700 * 119.99633 * 174.95579 * 4 3 2 7 7 C 1.52996 * 112.84968 * 294.09230 * 6 4 3 8 8 N 1.46906 * 109.47667 * 294.04055 * 7 6 4 9 9 C 1.46896 * 111.00206 * 174.64025 * 8 7 6 10 10 C 1.52996 * 109.47120 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.46867 * 305.00121 * 10 9 8 12 12 C 1.52997 * 109.47236 * 64.99698 * 10 9 8 13 13 C 1.53003 * 109.47076 * 185.00122 * 10 9 8 14 14 C 1.50703 * 109.46999 * 175.00047 * 13 10 9 15 15 H 1.07999 * 120.00185 * 359.97438 * 14 13 10 16 16 C 1.37872 * 119.99913 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00090 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46793 * 119.99548 * 18 16 14 21 21 H 1.48493 * 109.47453 * 239.99540 * 18 16 14 22 22 C 1.53777 * 113.69084 * 65.36896 * 6 4 3 23 23 C 1.53779 * 87.08521 * 89.12334 * 22 6 4 24 24 C 1.53784 * 87.08144 * 25.42855 * 23 22 6 25 25 H 1.08999 * 109.47118 * 300.00191 * 1 2 3 26 26 H 1.08999 * 109.46762 * 59.99646 * 1 2 3 27 27 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47118 * 239.99809 * 2 1 3 29 29 H 1.09001 * 109.47283 * 120.00337 * 2 1 3 30 30 H 0.97004 * 119.99795 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47130 * 174.04139 * 7 6 4 32 32 H 1.08997 * 109.47267 * 54.04417 * 7 6 4 33 33 H 1.00894 * 110.99532 * 298.60008 * 8 7 6 34 34 H 1.09006 * 109.47026 * 300.00328 * 9 8 7 35 35 H 1.09001 * 109.46872 * 60.00057 * 9 8 7 36 36 H 1.08993 * 109.47538 * 300.00337 * 12 10 9 37 37 H 1.09005 * 109.46847 * 60.00411 * 12 10 9 38 38 H 1.09007 * 109.47022 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47260 * 294.99674 * 13 10 9 40 40 H 1.08998 * 109.47290 * 54.99868 * 13 10 9 41 41 H 0.97007 * 120.00354 * 180.02562 * 17 16 14 42 42 H 1.09004 * 113.61185 * 203.67042 * 22 6 4 43 43 H 1.08992 * 113.61347 * 334.56965 * 22 6 4 44 44 H 1.08995 * 113.61385 * 270.88849 * 23 22 6 45 45 H 1.08998 * 113.61949 * 139.97773 * 23 22 6 46 46 H 1.08994 * 113.61839 * 220.01593 * 24 23 22 47 47 H 1.09005 * 113.61438 * 89.11546 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1308 0.7096 0.0932 6 6 3.8467 3.0433 -0.1142 7 6 3.5239 3.6807 -1.4671 8 7 4.2627 2.9813 -2.5269 9 6 3.8810 3.4828 -3.8538 10 6 4.6690 2.7318 -4.9289 11 1 5.7360 2.8161 -4.7227 12 6 4.2632 1.2566 -4.9216 13 6 4.3651 3.3376 -6.3006 14 6 5.2322 2.6804 -7.3433 15 1 5.9305 1.9081 -7.0563 16 6 5.1348 3.0657 -8.6635 17 7 4.2848 4.0064 -9.0129 18 14 6.2101 2.2515 -9.9558 19 1 7.0742 1.2312 -9.3096 20 1 5.3502 1.5975 -10.9748 21 1 7.0602 3.2779 -10.6107 22 6 3.4788 3.9291 1.0877 23 6 4.7915 3.4588 1.7361 24 6 5.3149 3.2115 0.3114 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3881 2.1185 0.0004 31 1 3.8160 4.7308 -1.4529 32 1 2.4537 3.6039 -1.6588 33 1 5.2586 3.0576 -2.3841 34 1 2.8137 3.3246 -4.0088 35 1 4.1034 4.5480 -3.9173 36 1 4.4796 0.8250 -3.9444 37 1 3.1961 1.1723 -5.1277 38 1 4.8242 0.7216 -5.6879 39 1 3.3156 3.1744 -6.5454 40 1 4.5709 4.4078 -6.2788 41 1 4.2160 4.2773 -9.9419 42 1 3.4632 4.9942 0.8565 43 1 2.5864 3.5969 1.6179 44 1 4.6854 2.5486 2.3262 45 1 5.3243 4.2483 2.2661 46 1 5.9047 2.3000 0.2149 47 1 5.8012 4.0804 -0.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:41 Heat of formation + Delta-G solvation = -44.782386 kcal Electronic energy + Delta-G solvation = -22866.478247 eV Core-core repulsion = 19662.702222 eV Total energy + Delta-G solvation = -3203.776025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79385 -37.84774 -36.54236 -35.26827 -33.76187 -31.90320 -30.78233 -28.23306 -26.67161 -25.88731 -24.98740 -23.73570 -22.65500 -21.99378 -21.44401 -19.23943 -19.04832 -16.67582 -16.32084 -16.18914 -15.82019 -15.32825 -14.92507 -14.82024 -14.66638 -14.16942 -13.87063 -13.48404 -13.00670 -12.89676 -12.76196 -12.55271 -12.48835 -12.11753 -12.02657 -11.77212 -11.62689 -11.48574 -11.33829 -11.10642 -10.84013 -10.72295 -10.55354 -10.37985 -10.25404 -10.13597 -9.71547 -9.64774 -9.10925 -9.09676 -8.91210 -8.31045 -8.08906 -5.95761 -3.96454 2.71150 3.11850 3.33781 3.41305 3.46162 4.07027 4.33747 4.48639 4.51002 4.62481 4.75918 4.84485 4.90371 4.98638 5.14134 5.28917 5.40306 5.43380 5.46330 5.49530 5.59200 5.64377 5.68356 5.73732 5.75302 5.84860 5.90332 6.00029 6.02176 6.19170 6.19769 6.39980 6.44230 6.58796 6.74658 7.04757 7.22994 7.23916 7.37432 7.47475 7.66404 7.72607 7.87928 8.04819 8.28144 8.49467 9.10213 9.66978 11.15852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.003402 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.478512 B = 8227.872098 C = 8867.156068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.732 5.732 4 C 0.556 3.444 5 O -0.533 6.533 6 C -0.103 4.103 7 C 0.079 3.921 8 N -0.685 5.685 9 C 0.066 3.934 10 C -0.082 4.082 11 H 0.053 0.947 12 C -0.122 4.122 13 C 0.027 3.973 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.118 4.118 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.397 0.603 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.340 0.660 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.258 0.742 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -0.800 22.829 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.384 5.384 4 C 0.342 3.658 5 O -0.408 6.408 6 C -0.106 4.106 7 C -0.051 4.051 8 N -0.316 5.316 9 C -0.063 4.063 10 C -0.101 4.101 11 H 0.072 0.928 12 C -0.179 4.179 13 C -0.010 4.010 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.163 4.163 23 C -0.179 4.179 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.231 0.769 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.412 -1.941 22.695 23.663 hybrid contribution 0.535 0.905 -0.978 1.436 sum -5.878 -1.036 21.717 22.522 Atomic orbital electron populations 1.22000 0.94626 1.03138 1.02439 1.21255 0.94026 0.83152 1.02341 1.45901 1.07174 1.08626 1.76709 1.19630 0.81816 0.89861 0.74483 1.90668 1.55440 1.46047 1.48664 1.22018 0.99359 0.93069 0.96194 1.21796 0.99356 0.94825 0.89114 1.60432 1.10741 1.58646 1.01731 1.22140 1.00364 0.96213 0.87553 1.21191 0.97894 0.95374 0.95623 0.92837 1.21571 1.00119 0.96280 0.99917 1.19123 0.96987 0.95539 0.89354 1.21289 1.21157 1.20268 0.92183 0.92501 1.25018 0.95642 0.95229 0.98696 1.69978 1.36412 1.30086 1.17312 0.86578 0.80526 0.79395 0.81781 1.19717 1.21096 1.21123 1.22994 0.98430 0.99680 0.95228 1.22841 0.96721 1.01392 0.96957 1.22809 0.94366 1.03041 0.95362 0.92231 0.91798 0.90893 0.91347 0.91834 0.76890 0.94403 0.91065 0.84163 0.91719 0.95802 0.93875 0.94364 0.92836 0.96619 0.96966 0.93200 0.89037 0.91278 0.90202 0.91121 0.89595 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.03 37.16 0.37 -0.72 16 2 C 0.12 1.12 6.40 -4.04 -0.03 1.09 16 3 N -0.73 -7.45 5.55 -60.30 -0.33 -7.79 16 4 C 0.56 7.20 6.30 -10.98 -0.07 7.13 16 5 O -0.53 -9.02 15.95 5.56 0.09 -8.94 16 6 C -0.10 -1.09 0.91 -154.85 -0.14 -1.23 16 7 C 0.08 0.92 5.03 -3.82 -0.02 0.90 16 8 N -0.68 -10.13 5.77 -113.78 -0.66 -10.79 16 9 C 0.07 1.14 5.07 -3.83 -0.02 1.12 16 10 C -0.08 -1.72 2.48 -90.62 -0.22 -1.94 16 11 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 14 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 15 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.13 -0.99 7.22 -25.92 -0.19 -1.18 16 23 C -0.14 -1.25 7.81 -25.92 -0.20 -1.45 16 24 C -0.12 -1.25 6.50 -25.91 -0.17 -1.42 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.40 3.06 8.48 -40.82 -0.35 2.72 16 31 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 33 H 0.34 5.01 8.21 -39.30 -0.32 4.69 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.17 6.95 -51.92 -0.36 0.81 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 43 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.10 7.34 -51.93 -0.38 0.72 16 47 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -32.73 376.71 -9.29 -42.02 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.91 Total: 1.94 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -0.86 Total: -12.61 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.25 Total: -45.07 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.73 -9.29 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.762 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds