Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47431 * 2 1 4 4 C 1.52998 * 109.46900 * 120.00288 * 2 1 3 5 5 C 1.50705 * 109.47263 * 294.99669 * 4 2 1 6 6 H 1.08005 * 119.99687 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99612 * 359.72767 * 7 5 4 9 9 Si 1.86795 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46950 * 179.73000 * 9 7 5 11 11 H 1.48504 * 109.47114 * 299.72284 * 9 7 5 12 12 H 1.48499 * 109.47317 * 59.72589 * 9 7 5 13 13 C 1.52998 * 109.47334 * 239.99876 * 2 1 3 14 14 N 1.46906 * 109.47187 * 64.99872 * 13 2 1 15 15 C 1.46899 * 111.00285 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46970 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47174 * 299.99505 * 16 15 14 18 18 C 1.53001 * 109.47185 * 60.00110 * 16 15 14 19 19 C 1.52996 * 109.46853 * 179.97438 * 16 15 14 20 20 N 1.46902 * 109.47460 * 163.57342 * 19 16 15 21 21 C 1.48529 * 111.00124 * 58.57861 * 20 19 16 22 22 C 1.54938 * 103.22831 * 159.72631 * 21 20 19 23 23 C 1.54595 * 102.92026 * 322.59108 * 22 21 20 24 24 C 1.47900 * 111.00372 * 175.98263 * 20 19 16 25 25 H 1.08995 * 109.46807 * 60.00277 * 1 2 3 26 26 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47152 * 299.99654 * 1 2 3 28 28 H 1.09006 * 109.47250 * 174.99903 * 4 2 1 29 29 H 1.08998 * 109.47603 * 54.99921 * 4 2 1 30 30 H 0.96999 * 120.00396 * 0.27701 * 8 7 5 31 31 H 1.08994 * 109.47573 * 184.99989 * 13 2 1 32 32 H 1.09001 * 109.47060 * 305.00479 * 13 2 1 33 33 H 1.00901 * 110.99301 * 56.04863 * 14 13 2 34 34 H 1.09005 * 109.46818 * 300.00307 * 15 14 13 35 35 H 1.08995 * 109.47054 * 60.00151 * 15 14 13 36 36 H 1.09004 * 109.46877 * 60.00114 * 17 16 15 37 37 H 1.08993 * 109.47362 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47325 * 300.00547 * 17 16 15 39 39 H 1.08993 * 109.47239 * 74.62522 * 18 16 15 40 40 H 1.09005 * 109.46632 * 194.62949 * 18 16 15 41 41 H 1.09003 * 109.46800 * 314.61708 * 18 16 15 42 42 H 1.09005 * 109.47391 * 283.57138 * 19 16 15 43 43 H 1.09005 * 109.47486 * 43.56716 * 19 16 15 44 44 H 1.09000 * 110.67325 * 278.16597 * 21 20 19 45 45 H 1.09004 * 110.66421 * 41.29331 * 21 20 19 46 46 H 1.09002 * 110.72366 * 204.23077 * 22 21 20 47 47 H 1.08999 * 110.72109 * 80.94818 * 22 21 20 48 48 H 1.09007 * 110.30796 * 263.03947 * 23 22 21 49 49 H 1.08998 * 110.39481 * 140.91976 * 23 22 21 50 50 H 1.08995 * 109.91707 * 333.50351 * 24 20 19 51 51 H 1.08996 * 109.91576 * 94.60338 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6721 -1.5214 3.8514 9 14 1.4984 0.5626 5.2496 10 1 1.9884 -0.1405 6.4624 11 1 2.0951 1.9212 5.1902 12 1 0.0187 0.6738 5.3057 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1248 -0.6272 -3.6672 16 6 1.7025 0.1910 -4.8892 17 6 0.1769 0.3008 -4.9270 18 6 2.3127 1.5912 -4.8012 19 6 2.1961 -0.5009 -6.1614 20 7 1.4789 0.0411 -7.3233 21 6 1.6807 1.5082 -7.4366 22 6 1.3369 1.8000 -8.9189 23 6 1.9057 0.5654 -9.6552 24 6 1.9974 -0.5358 -8.5826 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1263 -0.7996 1.2056 29 1 1.6054 -1.7198 1.2951 30 1 2.9288 -2.0224 3.0614 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2951 33 1 1.9883 0.9872 -2.3966 34 1 3.2117 -0.7051 -3.6405 35 1 1.6904 -1.6249 -3.7297 36 1 -0.1744 0.7939 -4.0205 37 1 -0.1240 0.8840 -5.7972 38 1 -0.2578 -0.6968 -4.9896 39 1 3.3763 1.5393 -5.0336 40 1 1.8165 2.2492 -5.5147 41 1 2.1797 1.9828 -3.7926 42 1 3.2652 -0.3243 -6.2797 43 1 2.0109 -1.5725 -6.0876 44 1 1.0020 2.0425 -6.7719 45 1 2.7167 1.7716 -7.2230 46 1 1.8295 2.7116 -9.2570 47 1 0.2580 1.8689 -9.0582 48 1 2.8951 0.7865 -10.0559 49 1 1.2338 0.2581 -10.4566 50 1 3.0354 -0.8410 -8.4515 51 1 1.3922 -1.3940 -8.8747 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602631685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -16.075691 kcal Electronic energy + Delta-G solvation = -23020.372561 eV Core-core repulsion = 19953.674446 eV Total energy + Delta-G solvation = -3066.698115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98939 -37.63897 -35.89883 -33.50792 -31.92392 -30.90797 -29.23145 -27.27785 -26.72640 -26.32651 -25.65523 -23.69189 -22.22217 -21.23717 -21.03585 -19.57970 -18.68704 -16.69291 -16.58333 -16.13238 -15.35131 -15.16513 -14.68757 -14.25011 -14.07388 -13.74654 -13.64037 -13.57670 -13.18233 -12.99438 -12.82399 -12.47842 -11.98574 -11.86919 -11.75263 -11.70075 -11.56572 -11.51120 -11.33587 -11.19765 -10.96169 -10.88106 -10.74539 -10.62285 -10.57102 -10.44067 -10.09415 -10.01445 -9.77251 -9.39676 -8.65491 -8.43498 -8.26886 -8.08940 -6.29572 -3.97328 3.46868 3.49093 3.67285 3.67675 4.27212 4.37082 4.49259 4.59833 4.63504 4.73019 4.80210 4.94190 4.99026 5.17697 5.28837 5.33676 5.38435 5.44905 5.46785 5.48722 5.50856 5.57137 5.64230 5.67337 5.72486 5.75719 5.80892 5.85036 5.88523 5.98815 6.02962 6.09539 6.28882 6.35490 6.37508 6.49180 6.51095 6.63957 6.69315 6.79964 6.93860 7.11046 7.16385 7.34732 7.45336 7.60822 7.68625 8.30439 8.53534 8.95677 9.74042 11.10815 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.049152 B = 0.002499 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.527803 B =11200.961821 C =11378.978651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.070 3.930 16 C -0.058 4.058 17 C -0.120 4.120 18 C -0.164 4.164 19 C 0.057 3.943 20 N -0.509 5.509 21 C 0.027 3.973 22 C -0.128 4.128 23 C -0.131 4.131 24 C 0.034 3.966 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.007 0.993 30 H 0.267 0.733 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.336 0.664 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.041 0.959 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 5.052 -26.857 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.060 4.060 16 C -0.059 4.059 17 C -0.177 4.177 18 C -0.221 4.221 19 C -0.072 4.072 20 N -0.233 5.233 21 C -0.100 4.100 22 C -0.166 4.166 23 C -0.169 4.169 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.060 0.940 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.193 4.629 -25.147 25.663 hybrid contribution 1.955 0.171 -1.720 2.609 sum -0.238 4.800 -26.866 27.293 Atomic orbital electron populations 1.21566 0.95471 1.00530 1.00268 1.21045 0.96161 0.98724 0.93420 0.92841 1.19251 0.95061 0.95638 0.92417 1.22034 1.38513 1.10255 0.92277 0.93231 1.25832 0.94786 0.97173 1.01395 1.70777 1.36359 1.14711 1.33453 0.83564 0.76072 0.75105 0.75649 1.20881 1.21552 1.21464 1.22144 0.96885 0.97771 0.89724 1.60554 1.63968 1.05673 1.01241 1.21907 0.96610 0.97854 0.89637 1.20536 0.97743 0.94869 0.92756 1.21618 0.92736 1.01863 1.01478 1.22466 0.99967 0.96859 1.02799 1.22360 0.94951 0.99613 0.90264 1.64799 1.52853 1.04073 1.01565 1.23704 1.00022 0.89717 0.96543 1.22549 1.01636 0.97451 0.94986 1.22384 1.01123 0.95349 0.98041 1.22862 0.98475 0.98061 0.90033 0.93737 0.94297 0.92737 0.97966 0.97506 0.92215 0.96122 0.91693 0.84459 0.96032 0.91190 0.91976 0.92432 0.93282 0.93464 0.90931 0.92115 0.94939 0.90678 0.88771 0.93564 0.91262 0.90750 0.91767 0.91110 0.94037 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.56 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -17.03 8.41 -34.44 -0.29 -17.32 16 6 H 0.05 1.40 7.06 -52.48 -0.37 1.03 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.62 13.65 55.43 0.76 -27.87 16 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.68 -9.90 5.17 -113.78 -0.59 -10.49 16 15 C 0.07 0.87 4.58 -3.83 -0.02 0.85 16 16 C -0.06 -0.61 0.59 -154.51 -0.09 -0.70 16 17 C -0.12 -1.34 7.83 37.16 0.29 -1.05 16 18 C -0.16 -1.59 7.21 37.16 0.27 -1.32 16 19 C 0.06 0.55 4.19 -3.82 -0.02 0.53 16 20 N -0.51 -4.63 4.30 -230.45 -0.99 -5.62 16 21 C 0.03 0.22 4.10 -1.90 -0.01 0.21 16 22 C -0.13 -0.87 7.06 -24.87 -0.18 -1.05 16 23 C -0.13 -0.86 6.93 -25.37 -0.18 -1.04 16 24 C 0.03 0.26 6.70 -2.75 -0.02 0.25 16 25 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 28 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 29 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 30 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.34 4.71 6.52 -39.29 -0.26 4.46 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 37 H 0.06 0.61 5.61 -51.93 -0.29 0.32 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.45 7.79 -51.93 -0.40 0.04 16 40 H 0.07 0.63 4.39 -51.93 -0.23 0.40 16 41 H 0.06 0.64 5.95 -51.93 -0.31 0.33 16 42 H 0.03 0.31 7.66 -51.93 -0.40 -0.08 16 43 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 44 H 0.09 0.78 4.70 -51.93 -0.24 0.54 16 45 H 0.05 0.38 7.10 -51.93 -0.37 0.01 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.04 0.32 7.67 -51.93 -0.40 -0.08 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -30.24 373.32 -10.47 -40.71 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -9.84 Total: -0.12 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.35 Total: -22.93 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.82 Total: -43.98 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.24 -10.47 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602631685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.635 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds