Wall clock time and date at job start Tue Mar 31 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47372 * 2 1 4 4 C 1.53004 * 109.47426 * 239.99871 * 2 1 3 5 5 C 1.50695 * 109.46908 * 64.99613 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99836 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00083 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46969 * 89.99743 * 9 7 5 11 11 H 1.48496 * 109.47200 * 209.99512 * 9 7 5 12 12 H 1.48501 * 109.47084 * 329.99813 * 9 7 5 13 13 C 1.53007 * 109.47139 * 119.99751 * 2 1 3 14 14 N 1.46900 * 109.47066 * 295.00235 * 13 2 1 15 15 C 1.46896 * 110.99946 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47033 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47275 * 59.99970 * 16 15 14 18 18 C 1.52994 * 109.47147 * 299.99652 * 16 15 14 19 19 C 1.53000 * 109.46933 * 179.97438 * 16 15 14 20 20 N 1.46900 * 109.47143 * 164.01150 * 19 16 15 21 21 C 1.48533 * 111.00116 * 58.08461 * 20 19 16 22 22 C 1.54935 * 103.23152 * 159.72528 * 21 20 19 23 23 C 1.54605 * 102.91745 * 322.58409 * 22 21 20 24 24 C 1.47900 * 111.00243 * 175.47946 * 20 19 16 25 25 H 1.08991 * 109.47196 * 300.00000 * 1 2 3 26 26 H 1.08994 * 109.46905 * 60.00538 * 1 2 3 27 27 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47194 * 185.00419 * 4 2 1 29 29 H 1.08999 * 109.46696 * 305.00244 * 4 2 1 30 30 H 0.96997 * 119.99636 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47034 * 175.00305 * 13 2 1 32 32 H 1.09000 * 109.46946 * 55.00198 * 13 2 1 33 33 H 1.00904 * 110.99894 * 303.95333 * 14 13 2 34 34 H 1.09000 * 109.47299 * 60.00114 * 15 14 13 35 35 H 1.09001 * 109.47052 * 299.99757 * 15 14 13 36 36 H 1.08995 * 109.47397 * 197.13884 * 17 16 15 37 37 H 1.09005 * 109.47107 * 317.13979 * 17 16 15 38 38 H 1.08997 * 109.46965 * 77.13601 * 17 16 15 39 39 H 1.09000 * 109.47396 * 300.00018 * 18 16 15 40 40 H 1.08996 * 109.47053 * 60.00215 * 18 16 15 41 41 H 1.09001 * 109.47185 * 180.02562 * 18 16 15 42 42 H 1.09005 * 109.47497 * 284.01292 * 19 16 15 43 43 H 1.09005 * 109.47343 * 44.01163 * 19 16 15 44 44 H 1.09006 * 110.66696 * 278.16112 * 21 20 19 45 45 H 1.09000 * 110.66759 * 41.27987 * 21 20 19 46 46 H 1.08998 * 110.72154 * 204.23247 * 22 21 20 47 47 H 1.08995 * 110.72942 * 80.93970 * 22 21 20 48 48 H 1.09001 * 110.30675 * 263.04688 * 23 22 21 49 49 H 1.08996 * 110.39207 * 140.91912 * 23 22 21 50 50 H 1.08998 * 109.91640 * 333.50874 * 24 20 19 51 51 H 1.09001 * 109.91579 * 94.60326 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9934 -0.4018 -3.7282 8 7 1.6458 0.2776 -4.7994 9 14 2.9638 -1.9884 -3.9027 10 1 2.0247 -3.1327 -4.0199 11 1 3.8127 -1.9182 -5.1190 12 1 3.8255 -2.1755 -2.7078 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1258 -0.6264 3.6672 16 6 1.7023 0.1911 4.8892 17 6 0.1765 0.2988 4.9270 18 6 2.3105 1.5922 4.8013 19 6 2.1958 -0.5007 6.1615 20 7 2.1370 0.4426 7.2861 21 6 0.7557 0.9525 7.4814 22 6 0.7704 1.4653 8.9434 23 6 1.6560 0.4242 9.6659 24 6 2.5046 -0.2220 8.5552 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.8931 -0.0454 -5.6799 31 1 3.1264 -0.7994 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 1.9881 0.9874 2.3967 34 1 3.2127 -0.7035 3.6401 35 1 1.6921 -1.6244 3.7301 36 1 -0.1140 1.1101 5.5944 37 1 -0.1983 0.5017 3.9237 38 1 -0.2450 -0.6387 5.2896 39 1 3.3974 1.5155 4.7744 40 1 1.9585 2.0848 3.8949 41 1 2.0091 2.1744 5.6721 42 1 1.5627 -1.3617 6.3760 43 1 3.2243 -0.8326 6.0191 44 1 0.5453 1.7683 6.7897 45 1 0.0286 0.1491 7.3627 46 1 -0.2367 1.4707 9.3604 47 1 1.2177 2.4576 8.9997 48 1 1.0351 -0.3275 10.1533 49 1 2.2992 0.9144 10.3967 50 1 2.2855 -1.2880 8.4932 51 1 3.5648 -0.0723 8.7592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602631687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:07 Heat of formation + Delta-G solvation = -9.923199 kcal Electronic energy + Delta-G solvation = -23037.306854 eV Core-core repulsion = 19970.875531 eV Total energy + Delta-G solvation = -3066.431323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98134 -37.63479 -35.88207 -33.32083 -31.92800 -30.98895 -29.23835 -27.50776 -27.24946 -26.56070 -25.65415 -23.68133 -21.86772 -21.20521 -21.04626 -19.40719 -18.61649 -16.78858 -16.54856 -16.09214 -15.59761 -14.92516 -14.64065 -14.24807 -14.19583 -13.97389 -13.68056 -13.53211 -13.23156 -12.81004 -12.60801 -12.49673 -12.29285 -12.01024 -11.87530 -11.69872 -11.59460 -11.54163 -11.47413 -11.16898 -10.94323 -10.87022 -10.80880 -10.64366 -10.57439 -10.43102 -10.23910 -9.75449 -9.70758 -9.34853 -9.02096 -8.65831 -8.49066 -8.10362 -5.99448 -3.96018 3.33181 3.40440 3.44233 3.67797 4.27276 4.37960 4.49127 4.50490 4.62582 4.79339 4.87070 4.92358 4.98240 5.18923 5.27653 5.33680 5.34169 5.42574 5.47547 5.50539 5.53282 5.57304 5.65858 5.68305 5.71814 5.77753 5.81437 5.85205 5.88059 5.99455 6.05157 6.08133 6.18474 6.34063 6.38843 6.46866 6.49315 6.63432 6.66297 6.79984 6.88455 7.07768 7.18764 7.31149 7.36424 7.50628 7.66967 7.86025 8.60541 9.06611 9.63630 11.14025 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044853 B = 0.002624 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.105651 B =10669.683653 C =10958.998522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.683 5.683 15 C 0.070 3.930 16 C -0.058 4.058 17 C -0.154 4.154 18 C -0.134 4.134 19 C 0.056 3.944 20 N -0.511 5.511 21 C 0.028 3.972 22 C -0.129 4.129 23 C -0.131 4.131 24 C 0.034 3.966 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.339 0.661 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.041 0.959 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -0.312 28.949 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.060 4.060 16 C -0.059 4.059 17 C -0.211 4.211 18 C -0.191 4.191 19 C -0.072 4.072 20 N -0.235 5.235 21 C -0.099 4.099 22 C -0.167 4.167 23 C -0.169 4.169 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.060 0.940 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.393 -0.193 28.654 28.657 hybrid contribution 1.036 -1.568 -0.169 1.887 sum 0.643 -1.761 28.485 28.547 Atomic orbital electron populations 1.21588 0.95309 1.00553 1.00633 1.20998 0.96304 0.98984 0.92915 0.92276 1.19615 0.95677 0.95881 0.93560 1.21140 1.35136 1.09551 0.89090 0.90823 1.25039 0.95715 0.96947 0.95984 1.69919 1.47294 1.39313 0.97976 0.86798 0.80637 0.84390 0.77549 1.20398 1.21523 1.19157 1.22162 0.96987 0.97739 0.89824 1.60523 1.63875 1.05886 1.01187 1.21896 0.96772 0.97692 0.89679 1.20528 0.96423 0.96156 0.92772 1.22331 0.94073 1.01000 1.03715 1.21785 1.00141 0.95435 1.01770 1.22372 1.00962 0.93068 0.90838 1.64803 1.22621 1.33332 1.02703 1.23720 0.89980 0.99831 0.96414 1.22555 0.99595 0.99295 0.95222 1.22384 0.98310 0.98446 0.97761 1.22859 1.00418 0.96553 0.89585 0.93700 0.92317 0.94314 0.97000 0.97107 0.92868 0.95971 0.91725 0.84205 0.95671 0.91561 0.91960 0.90435 0.93803 0.93235 0.92752 0.91464 0.94710 0.90923 0.88758 0.93392 0.91243 0.90814 0.91751 0.91156 0.94016 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.45 2.48 -90.61 -0.22 -1.67 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.41 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 C 0.06 1.01 5.07 -3.82 -0.02 0.99 16 14 N -0.68 -9.37 4.93 -113.78 -0.56 -9.93 16 15 C 0.07 0.82 4.58 -3.83 -0.02 0.80 16 16 C -0.06 -0.58 0.59 -154.51 -0.09 -0.67 16 17 C -0.15 -1.56 7.22 37.16 0.27 -1.29 16 18 C -0.13 -1.36 7.65 37.15 0.28 -1.07 16 19 C 0.06 0.53 4.19 -3.82 -0.02 0.51 16 20 N -0.51 -4.52 4.31 -230.45 -0.99 -5.51 16 21 C 0.03 0.22 4.11 -1.90 -0.01 0.21 16 22 C -0.13 -0.87 7.06 -24.87 -0.18 -1.04 16 23 C -0.13 -0.85 6.93 -25.37 -0.18 -1.02 16 24 C 0.03 0.26 6.70 -2.76 -0.02 0.24 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.34 4.56 6.77 -39.29 -0.27 4.29 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.56 4.52 -51.93 -0.23 0.33 16 37 H 0.08 0.92 7.16 -51.93 -0.37 0.55 16 38 H 0.04 0.44 7.63 -51.93 -0.40 0.04 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 41 H 0.07 0.67 5.61 -51.93 -0.29 0.37 16 42 H 0.03 0.33 7.63 -51.93 -0.40 -0.07 16 43 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 44 H 0.09 0.78 4.66 -51.93 -0.24 0.54 16 45 H 0.05 0.40 7.00 -51.93 -0.36 0.03 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.04 0.32 7.66 -51.93 -0.40 -0.08 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -29.71 370.89 -10.10 -39.81 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -9.87 Total: -0.44 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.37 Total: -19.49 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.78 Total: -42.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.71 -10.10 -39.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602631687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.891 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds