Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47424 * 180.02562 * 16 15 14 18 18 C 1.46842 * 111.00242 * 66.04162 * 17 16 15 19 19 C 1.53033 * 109.52389 * 174.16415 * 18 17 16 20 20 C 1.53112 * 109.27875 * 59.18245 * 19 18 17 21 21 C 1.53124 * 109.15905 * 302.34397 * 20 19 18 22 22 C 1.53006 * 109.50120 * 177.59439 * 21 20 19 23 23 C 1.52997 * 109.50476 * 297.71528 * 21 20 19 24 24 C 1.46846 * 110.99455 * 301.83682 * 17 16 15 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08999 * 109.46555 * 294.18800 * 18 17 16 39 39 H 1.09006 * 109.45821 * 54.15756 * 18 17 16 40 40 H 1.08997 * 109.50378 * 179.12459 * 19 18 17 41 41 H 1.09009 * 109.50409 * 299.19874 * 19 18 17 42 42 H 1.09001 * 109.52787 * 62.24927 * 20 19 18 43 43 H 1.09001 * 109.52119 * 182.44292 * 20 19 18 44 44 H 1.09006 * 109.46892 * 60.00381 * 22 21 20 45 45 H 1.09000 * 109.46778 * 179.97438 * 22 21 20 46 46 H 1.08993 * 109.46995 * 300.00371 * 22 21 20 47 47 H 1.08990 * 109.47327 * 59.99747 * 23 21 20 48 48 H 1.08995 * 109.46887 * 180.02562 * 23 21 20 49 49 H 1.09004 * 109.46873 * 299.99789 * 23 21 20 50 50 H 1.09011 * 109.46193 * 305.85240 * 24 17 16 51 51 H 1.08997 * 109.46502 * 65.82066 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 7 2.1764 -0.4739 -6.1107 18 6 1.5027 -1.7645 -6.3031 19 6 1.9111 -2.3584 -7.6530 20 6 3.4305 -2.5450 -7.6844 21 6 4.1079 -1.1948 -7.4335 22 6 5.6261 -1.3829 -7.4036 23 6 3.7350 -0.2204 -8.5525 24 6 3.6359 -0.6348 -6.0898 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 1.7908 -2.4473 -5.5038 39 1 0.4229 -1.6170 -6.2830 40 1 1.4230 -3.3235 -7.7886 41 1 1.6102 -1.6827 -8.4539 42 1 3.7269 -3.2510 -6.9087 43 1 3.7304 -2.9272 -8.6601 44 1 5.9613 -1.7851 -8.3596 45 1 6.1077 -0.4214 -7.2254 46 1 5.8906 -2.0758 -6.6050 47 1 2.6536 -0.0859 -8.5718 48 1 4.2178 0.7402 -8.3736 49 1 4.0683 -0.6215 -9.5097 50 1 4.1055 0.3333 -5.9148 51 1 3.9141 -1.3228 -5.2916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602636060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -36.630643 kcal Electronic energy + Delta-G solvation = -22884.861043 eV Core-core repulsion = 19817.271599 eV Total energy + Delta-G solvation = -3067.589444 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11467 -37.23985 -35.66236 -33.85062 -32.52361 -31.72226 -28.22421 -27.48615 -26.86168 -26.40549 -25.24398 -23.85385 -22.48583 -22.21379 -20.98910 -19.32284 -18.55416 -16.71256 -16.02890 -15.91205 -15.31122 -15.03574 -14.87767 -14.51147 -14.17200 -14.01980 -13.70522 -13.60836 -13.43269 -12.84918 -12.76542 -12.49136 -12.25319 -12.19868 -11.97825 -11.78027 -11.68749 -11.65639 -11.39147 -11.27828 -10.98563 -10.90980 -10.78333 -10.65402 -10.51625 -10.42485 -10.22586 -10.08214 -9.81907 -9.45741 -8.54382 -8.39259 -8.29269 -8.17943 -6.31963 -3.99971 3.45496 3.47619 3.66000 3.66498 4.33265 4.41671 4.52570 4.55964 4.58876 4.81291 4.93496 5.02030 5.09789 5.14263 5.22229 5.30551 5.39343 5.41400 5.44536 5.45912 5.50613 5.56965 5.60494 5.64279 5.67042 5.71733 5.76719 5.79218 5.87350 5.94272 5.95348 5.99646 6.04108 6.08805 6.26780 6.30426 6.43243 6.58613 6.82599 6.89851 6.91333 7.06171 7.12079 7.25588 7.41343 7.54254 7.61689 8.27497 8.50951 8.93073 9.71592 11.08439 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033916 B = 0.002531 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.378397 B =11059.538181 C =11318.089864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.022 3.978 16 C 0.057 3.943 17 N -0.530 5.530 18 C 0.051 3.949 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.063 4.063 22 C -0.142 4.142 23 C -0.132 4.132 24 C 0.062 3.938 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.002 0.998 29 H 0.006 0.994 30 H 0.267 0.733 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.045 0.955 50 H 0.072 0.928 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 0.390 -26.079 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.109 4.109 16 C -0.071 4.071 17 N -0.253 5.253 18 C -0.077 4.077 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.064 4.064 22 C -0.200 4.200 23 C -0.189 4.189 24 C -0.066 4.066 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.814 0.409 -24.867 24.884 hybrid contribution 1.188 -0.445 -0.842 1.523 sum 2.003 -0.035 -25.710 25.787 Atomic orbital electron populations 1.21573 0.95449 1.00524 1.00344 1.21060 0.96190 0.98816 0.93354 0.92676 1.19251 0.95072 0.95628 0.92401 1.22030 1.38590 1.10281 0.92261 0.93190 1.25838 0.94738 0.97152 1.01405 1.70782 1.36335 1.14707 1.33455 0.83565 0.76085 0.75121 0.75631 1.20849 1.21512 1.21446 1.22153 0.96928 0.97683 0.89696 1.60485 1.63824 1.05703 1.01351 1.22641 0.97391 0.99343 0.91520 1.22190 1.01568 0.97319 0.86007 1.62203 1.05157 1.22104 1.35807 1.22122 0.98983 0.89829 0.96720 1.21633 0.95799 1.00500 0.97689 1.21654 0.95323 0.96332 1.01534 1.20590 0.94760 0.95528 0.95475 1.21853 0.94682 1.01733 1.01744 1.21778 1.02702 0.98032 0.96416 1.22176 0.88083 1.00435 0.95942 0.94318 0.92610 0.93750 0.97951 0.97526 0.92224 0.96059 0.91791 0.84524 0.95600 0.91402 0.89740 0.90815 0.94656 0.90652 0.91711 0.90866 0.92332 0.91896 0.92472 0.92542 0.92793 0.91132 0.93158 0.93581 0.90928 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.57 2.48 -90.62 -0.22 -1.80 16 3 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.03 8.41 -34.44 -0.29 -17.31 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.58 13.65 55.43 0.76 -27.82 16 9 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.68 -9.95 5.96 -113.78 -0.68 -10.62 16 15 C 0.02 0.28 4.99 -3.82 -0.02 0.26 16 16 C 0.06 0.60 5.62 -3.82 -0.02 0.58 16 17 N -0.53 -5.16 4.14 -234.67 -0.97 -6.13 16 18 C 0.05 0.47 5.05 -3.84 -0.02 0.46 16 19 C -0.12 -0.93 5.74 -26.66 -0.15 -1.08 16 20 C -0.11 -0.86 4.79 -26.61 -0.13 -0.99 16 21 C -0.06 -0.51 0.77 -154.42 -0.12 -0.63 16 22 C -0.14 -1.05 8.48 37.16 0.32 -0.74 16 23 C -0.13 -1.03 8.04 37.16 0.30 -0.73 16 24 C 0.06 0.58 3.55 -3.83 -0.01 0.57 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 28 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 29 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 30 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.34 4.65 8.73 -39.29 -0.34 4.31 16 34 H 0.03 0.33 6.51 -51.93 -0.34 -0.01 16 35 H 0.07 0.89 6.68 -51.93 -0.35 0.55 16 36 H 0.08 0.92 8.06 -51.92 -0.42 0.50 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.36 6.75 -51.93 -0.35 0.01 16 39 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.58 6.59 -51.92 -0.34 0.24 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.61 6.01 -51.93 -0.31 0.30 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.70 8.12 -51.92 -0.42 0.28 16 51 H 0.04 0.38 6.61 -51.93 -0.34 0.04 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -30.06 379.03 -10.72 -40.77 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -10.19 Total: -0.62 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -0.26 Total: -21.90 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.89 Total: -44.58 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.06 -10.72 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602636060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.144 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds