Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46813 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46906 * 119.99992 * 9 7 5 12 12 H 1.48497 * 109.46783 * 239.99773 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.46769 * 180.02562 * 16 15 14 18 18 C 1.46843 * 111.00314 * 66.04469 * 17 16 15 19 19 C 1.53036 * 109.52501 * 174.16101 * 18 17 16 20 20 C 1.53118 * 109.27888 * 59.17739 * 19 18 17 21 21 C 1.53119 * 109.15998 * 302.34413 * 20 19 18 22 22 C 1.53003 * 109.49872 * 177.59456 * 21 20 19 23 23 C 1.52995 * 109.50583 * 297.71385 * 21 20 19 24 24 C 1.46847 * 111.00007 * 301.83069 * 17 16 15 25 25 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 27 27 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 28 28 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 29 29 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 30 30 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 32 32 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 33 33 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 34 34 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 35 35 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 36 36 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 37 37 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 38 38 H 1.09005 * 109.46467 * 294.17786 * 18 17 16 39 39 H 1.09008 * 109.46417 * 54.15249 * 18 17 16 40 40 H 1.09006 * 109.50549 * 179.12318 * 19 18 17 41 41 H 1.09003 * 109.50051 * 299.19261 * 19 18 17 42 42 H 1.08995 * 109.52393 * 62.25378 * 20 19 18 43 43 H 1.09004 * 109.51917 * 182.44385 * 20 19 18 44 44 H 1.08993 * 109.47047 * 60.00270 * 22 21 20 45 45 H 1.09001 * 109.46463 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.47364 * 299.99844 * 22 21 20 47 47 H 1.08998 * 109.46871 * 60.00076 * 23 21 20 48 48 H 1.09000 * 109.47204 * 180.02562 * 23 21 20 49 49 H 1.09000 * 109.47337 * 300.00373 * 23 21 20 50 50 H 1.08993 * 109.46224 * 305.85870 * 24 17 16 51 51 H 1.08999 * 109.46167 * 65.82807 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 0.7401 1.7732 -4.8434 11 1 2.7162 0.9685 -5.9964 12 1 0.6451 -0.2869 -6.1185 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 7 2.1773 -0.4729 6.1106 18 6 3.6443 -0.4661 6.1769 19 6 4.0980 -1.0325 7.5243 20 6 3.5682 -2.4610 7.6765 21 6 2.0419 -2.4465 7.5554 22 6 1.5088 -3.8777 7.6464 23 6 1.4476 -1.6062 8.6874 24 6 1.6478 -1.8392 6.2071 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.1264 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2952 30 1 2.9251 -1.8407 -4.7318 31 1 3.1263 -0.7995 1.2055 32 1 1.6055 -1.7199 1.2951 33 1 0.6529 0.1792 2.4753 34 1 3.2128 -0.7039 3.6400 35 1 1.6921 -1.6247 3.7299 36 1 2.1358 1.1889 4.8266 37 1 0.6155 0.2676 4.9161 38 1 4.0472 -1.0795 5.3709 39 1 4.0079 0.5561 6.0718 40 1 5.1872 -1.0417 7.5670 41 1 3.7076 -0.4110 8.3302 42 1 3.9898 -3.0912 6.8934 43 1 3.8524 -2.8527 8.6532 44 1 1.7928 -4.3109 8.6054 45 1 0.4222 -3.8668 7.5597 46 1 1.9314 -4.4750 6.8385 47 1 1.8268 -0.5865 8.6205 48 1 0.3611 -1.5966 8.6009 49 1 1.7316 -2.0371 9.6475 50 1 0.5613 -1.8143 6.1237 51 1 2.0600 -2.4462 5.4010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602636061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -32.526143 kcal Electronic energy + Delta-G solvation = -22857.248722 eV Core-core repulsion = 19789.837262 eV Total energy + Delta-G solvation = -3067.411460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07874 -37.21120 -35.58805 -33.64433 -32.45068 -31.68612 -28.24282 -27.46335 -26.87105 -26.72779 -25.32564 -23.97804 -22.45152 -22.06885 -20.92386 -18.95375 -18.52460 -16.51128 -15.97438 -15.86151 -15.30033 -15.00671 -14.87399 -14.48081 -14.42407 -13.99306 -13.73499 -13.62354 -13.16140 -12.76244 -12.60119 -12.38928 -12.29053 -12.17725 -12.04655 -11.87009 -11.70082 -11.63419 -11.38697 -11.23923 -10.90330 -10.87742 -10.75711 -10.68623 -10.48422 -10.38879 -10.32712 -10.19837 -9.71915 -9.18340 -8.97067 -8.39748 -8.33057 -8.12858 -5.97573 -3.98678 3.32214 3.39747 3.43959 3.70560 4.36793 4.44379 4.51641 4.57840 4.59134 4.85083 4.98557 5.05516 5.13692 5.18845 5.25508 5.33875 5.38288 5.42370 5.45966 5.49286 5.54308 5.60927 5.67126 5.69738 5.73993 5.76171 5.80317 5.82110 5.91314 5.97624 5.98493 6.02475 6.06494 6.12138 6.25384 6.29529 6.46156 6.55426 6.85881 6.93837 6.97634 7.10597 7.17232 7.35940 7.63941 7.70313 7.85944 8.02778 8.46614 9.07951 9.64789 11.14054 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.035349 B = 0.002492 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.911310 B =11234.783005 C =11273.596243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.686 5.686 15 C 0.022 3.978 16 C 0.057 3.943 17 N -0.530 5.530 18 C 0.051 3.949 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.063 4.063 22 C -0.142 4.142 23 C -0.132 4.132 24 C 0.062 3.938 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.045 0.955 50 H 0.072 0.928 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -1.545 25.810 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.318 5.318 15 C -0.109 4.109 16 C -0.071 4.071 17 N -0.253 5.253 18 C -0.077 4.077 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.064 4.064 22 C -0.200 4.200 23 C -0.189 4.189 24 C -0.066 4.066 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.156 0.844 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.364 -0.963 26.060 26.081 hybrid contribution -0.480 -0.927 -1.713 2.006 sum -0.845 -1.890 24.347 24.435 Atomic orbital electron populations 1.21739 0.96667 1.00388 1.00308 1.21222 0.94883 1.00087 0.94099 0.91612 1.19117 0.96114 0.95365 0.90423 1.21277 1.34489 1.08259 0.90956 0.92483 1.25034 0.95353 0.95109 0.99141 1.69981 1.39155 1.21323 1.23267 0.86565 0.78264 0.80117 0.83252 1.19730 1.21070 1.21122 1.22133 1.00209 0.94363 0.89630 1.60533 1.19512 1.50449 1.01350 1.22638 1.00847 0.96023 0.91408 1.22193 1.00670 0.98283 0.85981 1.62202 1.09048 1.17631 1.36415 1.22126 0.87693 1.01057 0.96805 1.21635 0.99859 0.96385 0.97742 1.21653 0.94678 0.96923 1.01587 1.20588 0.95275 0.95020 0.95471 1.21851 1.01000 0.95451 1.01702 1.21779 1.00199 1.00686 0.96261 1.22172 0.99797 0.88751 0.95915 0.94096 0.94944 0.91811 0.96705 0.96798 0.93159 0.91674 0.96021 0.84379 0.91351 0.95634 0.89736 0.90876 0.94586 0.90636 0.91714 0.90898 0.92305 0.91930 0.92493 0.92562 0.92783 0.91127 0.93175 0.93607 0.90955 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.78 37.16 0.33 -2.19 16 2 C -0.08 -1.74 2.55 -90.62 -0.23 -1.97 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.17 5.14 -3.82 -0.02 1.15 16 14 N -0.69 -10.21 6.50 -113.78 -0.74 -10.95 16 15 C 0.02 0.28 4.99 -3.82 -0.02 0.26 16 16 C 0.06 0.61 5.62 -3.82 -0.02 0.59 16 17 N -0.53 -5.23 4.14 -234.67 -0.97 -6.20 16 18 C 0.05 0.48 5.05 -3.84 -0.02 0.46 16 19 C -0.12 -0.94 5.74 -26.65 -0.15 -1.10 16 20 C -0.11 -0.87 4.79 -26.61 -0.13 -1.00 16 21 C -0.06 -0.51 0.77 -154.43 -0.12 -0.63 16 22 C -0.14 -1.05 8.48 37.16 0.32 -0.74 16 23 C -0.13 -1.04 8.04 37.16 0.30 -0.74 16 24 C 0.06 0.59 3.55 -3.83 -0.01 0.57 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 27 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.72 6.98 -39.29 -0.27 4.45 16 34 H 0.07 0.92 6.68 -51.93 -0.35 0.57 16 35 H 0.03 0.33 6.51 -51.93 -0.34 -0.01 16 36 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.37 6.75 -51.93 -0.35 0.02 16 39 H 0.08 0.70 8.06 -51.92 -0.42 0.28 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.58 6.59 -51.93 -0.34 0.24 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.62 6.01 -51.93 -0.31 0.30 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 51 H 0.04 0.39 6.61 -51.93 -0.34 0.05 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -29.24 378.08 -10.71 -39.95 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -10.12 Total: -0.82 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.29 Total: -18.02 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.97 Total: -43.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.24 -10.71 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602636061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.424 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds