Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47240 * 2 1 4 4 C 1.53006 * 109.46888 * 120.00108 * 2 1 3 5 5 C 1.50702 * 109.46712 * 294.99799 * 4 2 1 6 6 H 1.07993 * 120.00359 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99604 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99966 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00212 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47468 * 89.99456 * 9 7 5 11 11 H 1.48501 * 109.46937 * 329.99305 * 9 7 5 12 12 H 1.48501 * 109.47057 * 209.99650 * 9 7 5 13 13 C 1.53002 * 109.46928 * 239.99857 * 2 1 3 14 14 N 1.46897 * 109.47221 * 65.00393 * 13 2 1 15 15 C 1.46896 * 110.99905 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47002 * 179.97438 * 15 14 13 17 17 H 1.09003 * 109.46411 * 172.79648 * 16 15 14 18 18 N 1.46845 * 109.46018 * 52.82608 * 16 15 14 19 19 C 1.46897 * 111.00629 * 54.13961 * 18 16 15 20 20 C 1.46849 * 111.20012 * 178.24197 * 18 16 15 21 21 C 1.53043 * 109.52467 * 61.73415 * 20 18 16 22 22 C 1.53113 * 109.27932 * 300.82614 * 21 20 18 23 23 C 1.53029 * 109.46707 * 292.76913 * 16 15 14 24 24 C 1.53003 * 109.50114 * 299.13288 * 23 16 15 25 25 C 1.53000 * 109.50351 * 59.25083 * 23 16 15 26 26 H 1.08997 * 109.47479 * 300.00282 * 1 2 3 27 27 H 1.09001 * 109.47033 * 60.00230 * 1 2 3 28 28 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46771 * 175.00493 * 4 2 1 30 30 H 1.08994 * 109.47441 * 54.99861 * 4 2 1 31 31 H 0.97000 * 120.00225 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46940 * 185.00131 * 13 2 1 33 33 H 1.09001 * 109.46980 * 304.99926 * 13 2 1 34 34 H 1.00892 * 111.00250 * 56.04209 * 14 13 2 35 35 H 1.08995 * 109.47043 * 299.99760 * 15 14 13 36 36 H 1.09000 * 109.47473 * 60.00031 * 15 14 13 37 37 H 1.09006 * 109.47023 * 54.63860 * 19 18 16 38 38 H 1.09001 * 109.47390 * 174.63725 * 19 18 16 39 39 H 1.09002 * 109.46863 * 294.64210 * 19 18 16 40 40 H 1.08997 * 109.46560 * 181.75640 * 20 18 16 41 41 H 1.09001 * 109.46200 * 301.73503 * 20 18 16 42 42 H 1.08999 * 109.49917 * 60.76486 * 21 20 18 43 43 H 1.08996 * 109.50212 * 180.88031 * 21 20 18 44 44 H 1.08995 * 109.52515 * 177.56123 * 22 21 20 45 45 H 1.09005 * 109.52415 * 297.68166 * 22 21 20 46 46 H 1.09007 * 109.46903 * 60.00226 * 24 23 16 47 47 H 1.09006 * 109.47143 * 179.97438 * 24 23 16 48 48 H 1.08992 * 109.47389 * 300.00175 * 24 23 16 49 49 H 1.09001 * 109.46872 * 51.56092 * 25 23 16 50 50 H 1.09005 * 109.47030 * 171.55849 * 25 23 16 51 51 H 1.08999 * 109.47239 * 291.55372 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9922 -0.4022 3.7283 8 7 1.6448 0.2773 4.7994 9 14 2.9625 -1.9889 3.9029 10 1 4.4160 -1.6855 3.8793 11 1 2.6285 -2.8996 2.7785 12 1 2.6142 -2.6430 5.1898 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7024 0.1908 -4.8891 17 1 2.1610 -0.2299 -5.7841 18 7 2.1410 1.5823 -4.7228 19 6 3.5823 1.6509 -4.4476 20 6 1.7900 2.3936 -5.8955 21 6 0.2692 2.4163 -6.0651 22 6 -0.2414 0.9835 -6.2409 23 6 0.1791 0.1478 -5.0287 24 6 -0.2752 -1.3001 -5.2240 25 6 -0.4659 0.7204 -3.7650 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7994 1.2057 30 1 1.6054 -1.7198 1.2952 31 1 1.8913 -0.0460 5.6801 32 1 3.1264 -0.7995 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 1.9882 0.9872 -2.3967 35 1 3.2127 -0.7038 -3.6399 36 1 1.6921 -1.6246 -3.7300 37 1 4.1273 1.1243 -5.2311 38 1 3.8984 2.6938 -4.4232 39 1 3.7908 1.1853 -3.4843 40 1 2.1551 3.4110 -5.7558 41 1 2.2480 1.9624 -6.7856 42 1 -0.1889 2.8599 -5.1811 43 1 0.0099 3.0055 -6.9446 44 1 -1.3285 0.9911 -6.3187 45 1 0.1856 0.5532 -7.1469 46 1 0.0274 -1.8952 -4.3624 47 1 -1.3604 -1.3302 -5.3229 48 1 0.1835 -1.7064 -6.1254 49 1 -0.0305 1.6950 -3.5444 50 1 -1.5391 0.8291 -3.9221 51 1 -0.2879 0.0450 -2.9282 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602645180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -10.871680 kcal Electronic energy + Delta-G solvation = -24267.133829 eV Core-core repulsion = 21200.661377 eV Total energy + Delta-G solvation = -3066.472452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33038 -36.71789 -35.04611 -34.26918 -32.37037 -31.26652 -28.21560 -27.19504 -27.03657 -26.60979 -25.61125 -23.99436 -21.91963 -21.45104 -21.14883 -19.03914 -18.23440 -16.72253 -16.08830 -15.71979 -15.43378 -15.07518 -14.48161 -14.16859 -14.07457 -13.89242 -13.48570 -13.26933 -13.05943 -12.77414 -12.61045 -12.35276 -12.26231 -11.92822 -11.82689 -11.77283 -11.61024 -11.45636 -11.28350 -11.14357 -10.95683 -10.82011 -10.66515 -10.38534 -10.30425 -10.14015 -10.05375 -9.78725 -9.59033 -9.32767 -8.98873 -8.46944 -8.38018 -7.80158 -5.97398 -3.93709 3.34066 3.41609 3.45678 3.73246 4.47531 4.50862 4.64642 4.65628 4.78149 4.95541 5.18588 5.18717 5.26198 5.29573 5.36391 5.38512 5.45163 5.51668 5.52260 5.65294 5.68789 5.72615 5.75002 5.76107 5.82037 5.87772 5.91102 6.06105 6.07026 6.13200 6.21621 6.32323 6.39472 6.44647 6.52133 6.64962 6.69982 6.92390 6.95934 7.00720 7.10548 7.20031 7.25169 7.37723 7.42861 7.56678 7.83281 7.88751 8.63140 9.09243 9.65902 11.16169 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.003677 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.346460 B = 7613.479951 C = 7741.069360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.056 3.944 14 N -0.666 5.666 15 C 0.060 3.940 16 C 0.099 3.901 17 H 0.035 0.965 18 N -0.529 5.529 19 C 0.021 3.979 20 C 0.059 3.941 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.046 4.046 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.006 0.994 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.349 0.651 35 H 0.021 0.979 36 H 0.076 0.924 37 H 0.021 0.979 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.024 0.976 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 0.647 -24.840 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.072 4.072 14 N -0.299 5.299 15 C -0.070 4.070 16 C -0.009 4.009 17 H 0.053 0.947 18 N -0.254 5.254 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.047 4.047 24 C -0.200 4.200 25 C -0.194 4.194 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.170 0.830 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.225 0.564 -24.277 24.315 hybrid contribution 2.094 -1.012 -0.501 2.379 sum 0.868 -0.448 -24.778 24.798 Atomic orbital electron populations 1.21628 0.95291 1.00490 1.00826 1.20961 0.96324 0.98909 0.92807 0.92339 1.19614 0.95239 0.96208 0.93648 1.21153 1.35097 1.09462 0.89104 0.90816 1.25029 0.95759 0.96844 0.95991 1.69918 1.47402 1.39285 0.97973 0.86813 0.80564 0.84659 0.77418 1.20523 1.19100 1.21537 1.22215 0.96750 0.97866 0.90403 1.60823 1.62440 1.06334 1.00298 1.22068 0.96600 0.97979 0.90360 1.21704 0.95726 0.87531 0.95959 0.94712 1.61814 1.14746 1.10533 1.38288 1.22423 0.87639 1.01877 1.00759 1.22058 0.96422 0.97604 0.90808 1.21603 0.94872 0.97079 1.01972 1.21702 1.00548 0.95289 0.97447 1.20437 0.93182 0.94722 0.96328 1.21926 1.00958 0.95934 1.01174 1.22121 0.96514 1.03428 0.97341 0.92461 0.93259 0.94406 0.97571 0.96723 0.92903 0.96375 0.91883 0.83049 0.96050 0.90531 0.96034 0.91404 0.91221 0.90964 0.95567 0.90451 0.92146 0.91964 0.93103 0.91857 0.92700 0.93728 0.91752 0.95726 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.39 2.48 -90.61 -0.22 -1.61 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.52 8.96 -34.44 -0.31 -14.83 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C 0.06 0.90 5.07 -3.82 -0.02 0.88 16 14 N -0.67 -8.84 2.41 -113.78 -0.27 -9.12 16 15 C 0.06 0.69 4.40 -3.83 -0.02 0.67 16 16 C 0.10 1.04 1.56 -67.73 -0.11 0.93 16 17 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 18 N -0.53 -5.44 3.05 -234.93 -0.72 -6.15 16 19 C 0.02 0.21 8.65 60.06 0.52 0.73 16 20 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 21 C -0.12 -1.05 5.75 -26.65 -0.15 -1.20 16 22 C -0.11 -1.04 4.78 -26.61 -0.13 -1.16 16 23 C -0.05 -0.47 0.54 -154.43 -0.08 -0.56 16 24 C -0.14 -1.39 8.16 37.16 0.30 -1.08 16 25 C -0.14 -1.65 6.60 37.16 0.25 -1.40 16 26 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 27 H 0.05 0.83 6.61 -51.93 -0.34 0.49 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 30 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.35 4.83 6.85 -39.30 -0.27 4.56 16 35 H 0.02 0.25 6.89 -51.93 -0.36 -0.11 16 36 H 0.08 0.88 6.10 -51.93 -0.32 0.57 16 37 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 38 H 0.07 0.60 8.00 -51.93 -0.42 0.18 16 39 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 40 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.78 6.78 -51.93 -0.35 0.42 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.66 6.30 -51.92 -0.33 0.33 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.84 6.21 -51.93 -0.32 0.52 16 50 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 51 H 0.10 1.38 4.72 -51.93 -0.25 1.13 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -29.16 363.53 -9.11 -38.27 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.85 Total: 0.30 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 0.14 Total: -18.69 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.22 Total: -42.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.16 -9.11 -38.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.401 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds