Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46791 * 2 1 4 4 C 1.52992 * 109.47767 * 239.99304 * 2 1 3 5 5 C 1.50705 * 109.46779 * 65.00001 * 4 2 1 6 6 H 1.07993 * 120.00239 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99921 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99678 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99746 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46655 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46896 * 60.00079 * 9 7 5 12 12 H 1.48496 * 109.47231 * 299.99907 * 9 7 5 13 13 C 1.53009 * 109.46868 * 119.99200 * 2 1 3 14 14 N 1.46898 * 109.47046 * 295.00389 * 13 2 1 15 15 C 1.46903 * 110.99528 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.46871 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.46123 * 172.86108 * 16 15 14 18 18 N 1.46849 * 109.46211 * 52.88785 * 16 15 14 19 19 C 1.46896 * 111.00611 * 54.14125 * 18 16 15 20 20 C 1.46852 * 111.19725 * 178.24375 * 18 16 15 21 21 C 1.53038 * 109.52471 * 61.73766 * 20 18 16 22 22 C 1.53115 * 109.27781 * 300.82191 * 21 20 18 23 23 C 1.53035 * 109.46332 * 292.83124 * 16 15 14 24 24 C 1.52995 * 109.50341 * 299.13883 * 23 16 15 25 25 C 1.53001 * 109.50055 * 59.25440 * 23 16 15 26 26 H 1.09001 * 109.46738 * 60.00897 * 1 2 3 27 27 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47815 * 300.00400 * 1 2 3 29 29 H 1.08994 * 109.47227 * 305.00475 * 4 2 1 30 30 H 1.09000 * 109.47765 * 184.99479 * 4 2 1 31 31 H 0.96996 * 120.00185 * 0.02562 * 8 7 5 32 32 H 1.08994 * 109.46866 * 55.00821 * 13 2 1 33 33 H 1.09002 * 109.46884 * 175.00486 * 13 2 1 34 34 H 1.00893 * 111.00256 * 56.04587 * 14 13 2 35 35 H 1.08999 * 109.46678 * 299.99680 * 15 14 13 36 36 H 1.08993 * 109.47551 * 59.99978 * 15 14 13 37 37 H 1.08999 * 109.46707 * 54.56945 * 19 18 16 38 38 H 1.08993 * 109.47323 * 174.56743 * 19 18 16 39 39 H 1.08997 * 109.47054 * 294.57468 * 19 18 16 40 40 H 1.09001 * 109.46015 * 181.75332 * 20 18 16 41 41 H 1.08994 * 109.46002 * 301.72928 * 20 18 16 42 42 H 1.09006 * 109.50126 * 60.76489 * 21 20 18 43 43 H 1.08994 * 109.50399 * 180.87816 * 21 20 18 44 44 H 1.08995 * 109.52200 * 177.55987 * 22 21 20 45 45 H 1.08997 * 109.52599 * 297.68545 * 22 21 20 46 46 H 1.08994 * 109.47378 * 59.99329 * 24 23 16 47 47 H 1.09001 * 109.47187 * 180.02562 * 24 23 16 48 48 H 1.09005 * 109.46748 * 299.99997 * 24 23 16 49 49 H 1.08993 * 109.47433 * 51.58435 * 25 23 16 50 50 H 1.09006 * 109.46873 * 171.58040 * 25 23 16 51 51 H 1.08996 * 109.47207 * 291.58047 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2490 5 6 1.6414 0.0569 -2.4765 6 1 1.0808 0.9743 -2.3757 7 6 1.9926 -0.4025 -3.7282 8 7 2.6758 -1.5196 -3.8509 9 14 1.4978 0.5617 -5.2497 10 1 1.9931 -0.1383 -6.4621 11 1 2.0899 1.9222 -5.1877 12 1 0.0179 0.6681 -5.3087 13 6 2.0399 -0.7211 1.2494 14 7 1.6512 0.0377 2.4457 15 6 2.1256 -0.6262 3.6673 16 6 1.7020 0.1913 4.8893 17 1 1.9415 -0.3621 5.7972 18 7 0.2557 0.4394 4.8346 19 6 -0.4891 -0.8184 4.6893 20 6 -0.1997 1.1875 6.0134 21 6 0.4917 2.5523 6.0516 22 6 2.0083 2.3493 6.1072 23 6 2.4501 1.5264 4.8938 24 6 3.9560 1.2678 4.9729 25 6 2.1298 2.2958 3.6107 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6055 -1.7198 -1.2949 30 1 3.1264 -0.7995 -1.2054 31 1 2.9324 -2.0204 -3.0609 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2058 34 1 0.6527 0.1795 2.4753 35 1 1.6919 -1.6242 3.7302 36 1 3.2124 -0.7034 3.6403 37 1 -0.2043 -1.5036 5.4877 38 1 -1.5585 -0.6162 4.7482 39 1 -0.2570 -1.2686 3.7241 40 1 -1.2791 1.3286 5.9593 41 1 0.0488 0.6293 6.9160 42 1 0.2326 3.1166 5.1556 43 1 0.1653 3.1010 6.9349 44 1 2.5064 3.3186 6.0908 45 1 2.2717 1.8200 7.0229 46 1 4.2693 0.6790 4.1108 47 1 4.4883 2.2190 4.9766 48 1 4.1832 0.7211 5.8881 49 1 1.0491 2.3509 3.4803 50 1 2.5393 3.3036 3.6796 51 1 2.5729 1.7810 2.7582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602645181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -18.103520 kcal Electronic energy + Delta-G solvation = -24241.082007 eV Core-core repulsion = 21174.295959 eV Total energy + Delta-G solvation = -3066.786048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.33411 -36.78661 -35.05068 -34.35426 -32.54685 -31.09481 -28.00907 -27.04005 -26.66639 -26.44123 -25.62233 -24.08588 -22.25344 -21.46854 -21.12176 -19.15370 -18.24146 -16.72451 -16.12206 -15.77389 -15.40668 -15.16834 -14.37564 -14.20220 -14.04559 -13.65366 -13.36111 -13.26857 -13.18620 -12.82741 -12.69213 -12.34728 -12.16712 -11.95197 -11.86068 -11.68945 -11.57337 -11.33011 -11.22405 -11.11882 -10.98926 -10.90525 -10.65402 -10.40450 -10.20897 -10.15437 -10.05228 -9.96911 -9.74769 -9.35254 -8.43104 -8.37282 -8.24600 -7.79951 -6.27345 -3.94915 3.48610 3.50778 3.69115 3.72396 4.47524 4.60619 4.64974 4.66753 4.77798 4.94971 5.17864 5.18714 5.25163 5.28556 5.38685 5.45388 5.49034 5.51290 5.53043 5.65449 5.70021 5.73736 5.73975 5.77093 5.81335 5.87503 5.89192 6.05210 6.06003 6.06544 6.22714 6.26191 6.32135 6.44071 6.47222 6.56218 6.65722 6.89395 6.95224 7.00449 7.10382 7.12204 7.17058 7.43459 7.50268 7.67251 7.85622 8.33254 8.56194 8.98188 9.76397 11.13118 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.003544 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.086317 B = 7898.687729 C = 8031.183805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 H 0.066 0.934 4 C 0.015 3.985 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.059 3.941 14 N -0.669 5.669 15 C 0.060 3.940 16 C 0.099 3.901 17 H 0.036 0.964 18 N -0.530 5.530 19 C 0.021 3.979 20 C 0.059 3.941 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.046 4.046 24 C -0.142 4.142 25 C -0.135 4.135 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.267 0.733 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.350 0.650 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.024 0.976 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 4.715 22.710 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.630 4.630 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.070 4.070 14 N -0.303 5.303 15 C -0.070 4.070 16 C -0.010 4.010 17 H 0.054 0.946 18 N -0.255 5.255 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.047 4.047 24 C -0.200 4.200 25 C -0.192 4.192 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.967 5.425 20.609 21.517 hybrid contribution -0.565 -1.415 2.610 3.023 sum -3.533 4.010 23.220 23.827 Atomic orbital electron populations 1.21714 0.96549 1.00212 1.00481 1.21038 0.94920 0.99921 0.93435 0.91531 1.19233 0.95254 0.95350 0.92424 1.22046 1.38526 1.10180 0.92286 0.93222 1.25810 0.94772 0.97161 1.01358 1.70777 1.36227 1.14948 1.33451 0.83577 0.76004 0.75198 0.75691 1.20919 1.21490 1.21545 1.22180 1.00022 0.94401 0.90422 1.60870 1.20925 1.48166 1.00328 1.22072 1.00578 0.94176 0.90212 1.21715 0.87141 0.95957 0.96146 0.94624 1.61815 1.03976 1.19796 1.39866 1.22420 0.98604 0.90695 1.01002 1.22059 0.99499 0.94672 0.90671 1.21604 0.95340 0.96418 1.02166 1.21699 0.95728 1.00004 0.97538 1.20437 0.93875 0.93928 0.96445 1.21925 0.95236 1.01539 1.01310 1.22065 1.02788 0.97054 0.97303 0.91939 0.94391 0.94553 0.97853 0.97718 0.92220 0.96456 0.91911 0.82873 0.96078 0.90482 0.95952 0.91416 0.91302 0.90980 0.95511 0.90495 0.92110 0.91939 0.93048 0.91822 0.92669 0.93684 0.91842 0.95660 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.07 -1.53 2.54 -90.62 -0.23 -1.76 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.28 16 5 C -0.59 -16.93 8.41 -34.43 -0.29 -17.22 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 9 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 14 N -0.67 -9.54 2.94 -113.78 -0.33 -9.87 16 15 C 0.06 0.74 4.40 -3.82 -0.02 0.72 16 16 C 0.10 1.09 1.56 -67.72 -0.11 0.98 16 17 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 18 N -0.53 -5.65 3.05 -234.93 -0.72 -6.36 16 19 C 0.02 0.21 8.65 60.06 0.52 0.73 16 20 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 21 C -0.12 -1.07 5.75 -26.65 -0.15 -1.22 16 22 C -0.11 -1.07 4.78 -26.61 -0.13 -1.19 16 23 C -0.05 -0.50 0.54 -154.43 -0.08 -0.58 16 24 C -0.14 -1.47 8.16 37.16 0.30 -1.17 16 25 C -0.13 -1.71 6.60 37.16 0.25 -1.47 16 26 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.60 6.68 -51.93 -0.35 0.25 16 29 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 30 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 31 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.35 5.07 5.11 -39.30 -0.20 4.87 16 35 H 0.02 0.26 6.88 -51.93 -0.36 -0.09 16 36 H 0.08 0.96 6.11 -51.93 -0.32 0.64 16 37 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 38 H 0.07 0.61 7.99 -51.93 -0.42 0.19 16 39 H 0.07 0.76 6.01 -51.93 -0.31 0.45 16 40 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.79 6.78 -51.93 -0.35 0.43 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 50 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 51 H 0.10 1.44 5.86 -51.93 -0.30 1.14 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -29.50 365.85 -9.54 -39.04 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -9.82 Total: 1.17 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 0.14 Total: -22.33 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.29 Total: -44.05 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.50 -9.54 -39.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.938 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds