Wall clock time and date at job start Tue Mar 31 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47325 * 2 1 4 4 C 1.53001 * 109.47113 * 119.99711 * 2 1 3 5 5 C 1.50695 * 109.47377 * 295.00188 * 4 2 1 6 6 H 1.07996 * 119.99810 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99986 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47119 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47023 * 120.00037 * 9 7 5 12 12 H 1.48501 * 109.47003 * 239.99355 * 9 7 5 13 13 C 1.53001 * 109.47194 * 239.99682 * 2 1 3 14 14 N 1.46905 * 109.46768 * 64.99876 * 13 2 1 15 15 C 1.46898 * 110.99751 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47173 * 175.47284 * 15 14 13 17 17 H 1.09000 * 109.46234 * 52.58574 * 16 15 14 18 18 N 1.46843 * 109.46325 * 172.56345 * 16 15 14 19 19 C 1.46898 * 111.00192 * 305.85451 * 18 16 15 20 20 C 1.46851 * 111.19834 * 181.75399 * 18 16 15 21 21 C 1.53033 * 109.52467 * 298.26106 * 20 18 16 22 22 C 1.53115 * 109.27868 * 59.17462 * 21 20 18 23 23 C 1.53035 * 109.46083 * 292.61650 * 16 15 14 24 24 C 1.52998 * 109.50468 * 300.74594 * 23 16 15 25 25 C 1.53004 * 109.50348 * 60.86402 * 23 16 15 26 26 H 1.08997 * 109.47300 * 60.00062 * 1 2 3 27 27 H 1.09001 * 109.47605 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47144 * 300.00150 * 1 2 3 29 29 H 1.09007 * 109.46998 * 55.00417 * 4 2 1 30 30 H 1.08995 * 109.47265 * 174.99381 * 4 2 1 31 31 H 0.97001 * 120.00587 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46883 * 305.00257 * 13 2 1 33 33 H 1.08991 * 109.47390 * 185.00242 * 13 2 1 34 34 H 1.00894 * 111.00032 * 56.05080 * 14 13 2 35 35 H 1.09004 * 109.47001 * 295.46714 * 15 14 13 36 36 H 1.08993 * 109.47585 * 55.46793 * 15 14 13 37 37 H 1.09004 * 109.47110 * 66.80945 * 19 18 16 38 38 H 1.09003 * 109.47123 * 186.80875 * 19 18 16 39 39 H 1.09002 * 109.47203 * 306.80717 * 19 18 16 40 40 H 1.09005 * 109.46036 * 58.27464 * 20 18 16 41 41 H 1.09000 * 109.46278 * 178.24029 * 20 18 16 42 42 H 1.09002 * 109.50478 * 179.11690 * 21 20 18 43 43 H 1.09004 * 109.50089 * 299.19725 * 21 20 18 44 44 H 1.09005 * 109.52523 * 62.25534 * 22 21 20 45 45 H 1.09007 * 109.52667 * 182.43924 * 22 21 20 46 46 H 1.09002 * 109.46982 * 59.99983 * 24 23 16 47 47 H 1.09002 * 109.47442 * 179.97438 * 24 23 16 48 48 H 1.08997 * 109.47112 * 300.00136 * 24 23 16 49 49 H 1.09000 * 109.47373 * 51.22232 * 25 23 16 50 50 H 1.08997 * 109.47497 * 171.22827 * 25 23 16 51 51 H 1.09005 * 109.47009 * 291.22370 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9933 -0.4017 3.7283 8 7 2.6764 -1.5186 3.8512 9 14 1.4996 0.5635 5.2496 10 1 0.7432 1.7751 4.8433 11 1 0.6459 -0.2854 6.1190 12 1 2.7180 0.9683 5.9959 13 6 2.0400 -0.7213 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1247 -0.6272 -3.6672 16 6 1.6063 0.1283 -4.8924 17 1 1.8643 1.1837 -4.8043 18 7 2.2211 -0.4259 -6.1053 19 6 3.6863 -0.4274 -5.9994 20 6 1.7808 0.3003 -7.3033 21 6 0.2651 0.1578 -7.4595 22 6 -0.4265 0.7214 -6.2152 23 6 0.0854 -0.0193 -4.9767 24 6 -0.2789 -1.5016 -5.0811 25 6 -0.5561 0.5781 -3.7227 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1262 -0.7995 1.2056 31 1 2.9237 -1.8416 4.7318 32 1 1.6053 -1.7199 -1.2950 33 1 3.1262 -0.7996 -1.2056 34 1 1.9881 0.9872 -2.3967 35 1 3.2146 -0.6333 -3.6784 36 1 1.7554 -1.6525 -3.6895 37 1 3.9938 -1.1284 -5.2234 38 1 4.1193 -0.7285 -6.9533 39 1 4.0330 0.5737 -5.7428 40 1 2.0381 1.3549 -7.2038 41 1 2.2769 -0.1131 -8.1814 42 1 -0.0635 0.7100 -8.3400 43 1 0.0085 -0.8954 -7.5737 44 1 -0.2015 1.7840 -6.1230 45 1 -1.5042 0.5827 -6.3030 46 1 0.0888 -2.0290 -4.2009 47 1 -1.3623 -1.6062 -5.1407 48 1 0.1771 -1.9257 -5.9757 49 1 -0.1743 1.5868 -3.5646 50 1 -1.6379 0.6149 -3.8503 51 1 -0.3129 -0.0418 -2.8597 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602645182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:37 Heat of formation + Delta-G solvation = -16.417435 kcal Electronic energy + Delta-G solvation = -23901.327382 eV Core-core repulsion = 20834.614448 eV Total energy + Delta-G solvation = -3066.712934 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24963 -36.79179 -35.00867 -34.24801 -32.43217 -31.29401 -27.94606 -27.12911 -26.79111 -26.53288 -25.66541 -23.96659 -22.19246 -21.45540 -21.22176 -19.10224 -18.27647 -16.34625 -15.96478 -15.72857 -15.52377 -14.93445 -14.52349 -14.38585 -14.11750 -13.88252 -13.43119 -13.32599 -13.01080 -12.75157 -12.45145 -12.32177 -12.17711 -12.03831 -11.74011 -11.53353 -11.45239 -11.36313 -11.23625 -11.18275 -10.94980 -10.80551 -10.73490 -10.38072 -10.27694 -10.27084 -10.09214 -9.94876 -9.65261 -9.11572 -8.91787 -8.43605 -8.31676 -7.88017 -5.96225 -3.97138 3.32845 3.40505 3.44565 3.66392 4.45242 4.51710 4.67928 4.74177 4.79581 4.90882 5.15558 5.22598 5.24879 5.29975 5.39734 5.41994 5.46166 5.53197 5.61139 5.68004 5.73565 5.78172 5.81842 5.83874 5.92910 5.93316 5.99029 6.03708 6.12509 6.18697 6.30291 6.31113 6.40399 6.45459 6.57461 6.61132 6.68881 6.92081 6.98245 7.00765 7.06772 7.22850 7.23774 7.39903 7.66068 7.72438 7.87963 8.04452 8.48571 9.09701 9.66282 11.15355 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003220 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.895600 B = 8693.649919 C = 9128.201023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.677 5.677 15 C 0.058 3.942 16 C 0.100 3.900 17 H 0.036 0.964 18 N -0.536 5.536 19 C 0.021 3.979 20 C 0.058 3.942 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.044 4.044 24 C -0.134 4.134 25 C -0.144 4.144 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.334 0.666 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.061 0.939 49 H 0.043 0.957 50 H 0.034 0.966 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 2.963 -23.208 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.307 5.307 15 C -0.072 4.072 16 C -0.008 4.008 17 H 0.054 0.946 18 N -0.261 5.261 19 C -0.127 4.127 20 C -0.070 4.070 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.044 4.044 24 C -0.191 4.191 25 C -0.202 4.202 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.151 0.849 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.430 2.077 -23.163 23.507 hybrid contribution 1.171 1.548 0.997 2.182 sum -2.259 3.624 -22.165 22.573 Atomic orbital electron populations 1.21637 0.95724 1.00576 1.00261 1.21181 0.95985 0.98823 0.94027 0.92955 1.19120 0.95848 0.95585 0.90496 1.21279 1.34414 1.08245 0.90995 0.92532 1.25022 0.95372 0.95101 0.99098 1.69973 1.39218 1.21279 1.23232 0.86588 0.78226 0.80157 0.83345 1.19751 1.21089 1.21160 1.22160 0.97133 0.97766 0.89477 1.60794 1.62823 1.05659 1.01435 1.22112 0.96622 0.99390 0.89048 1.21628 0.94639 0.95805 0.88746 0.94565 1.61849 1.06997 1.54711 1.02522 1.22425 0.87727 1.00172 1.02351 1.22063 0.96294 0.95791 0.92804 1.21639 0.94208 1.02111 0.97722 1.21723 0.99783 0.99141 0.94480 1.20410 0.92808 0.96144 0.95070 1.21839 0.99921 0.95044 1.02257 1.22167 0.97694 1.01555 0.98749 0.93613 0.94184 0.92899 0.96575 0.97032 0.93181 0.91524 0.95948 0.84860 0.95485 0.89909 0.90875 0.91724 0.95862 0.95329 0.91076 0.92038 0.90830 0.92664 0.91935 0.92394 0.93779 0.91995 0.93783 0.94703 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.06 5.07 -3.82 -0.02 1.04 16 14 N -0.68 -9.16 2.50 -113.78 -0.28 -9.44 16 15 C 0.06 0.71 4.60 -3.83 -0.02 0.69 16 16 C 0.10 1.11 1.40 -67.73 -0.10 1.02 16 17 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 18 N -0.54 -5.49 4.03 -234.93 -0.95 -6.44 16 19 C 0.02 0.20 8.89 60.06 0.53 0.73 16 20 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 21 C -0.12 -1.02 5.74 -26.65 -0.15 -1.18 16 22 C -0.11 -1.10 4.78 -26.61 -0.13 -1.22 16 23 C -0.04 -0.48 0.54 -154.43 -0.08 -0.56 16 24 C -0.13 -1.48 7.67 37.16 0.29 -1.20 16 25 C -0.14 -1.73 7.25 37.16 0.27 -1.46 16 26 H 0.04 0.76 6.45 -51.93 -0.33 0.42 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.33 4.44 8.78 -39.29 -0.35 4.09 16 35 H 0.03 0.34 6.05 -51.93 -0.31 0.02 16 36 H 0.08 1.09 6.03 -51.93 -0.31 0.77 16 37 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 38 H 0.06 0.52 7.97 -51.93 -0.41 0.10 16 39 H 0.02 0.22 8.11 -51.93 -0.42 -0.20 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.71 6.26 -51.93 -0.33 0.38 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 49 H 0.04 0.54 8.13 -51.93 -0.42 0.11 16 50 H 0.03 0.40 8.13 -51.93 -0.42 -0.02 16 51 H 0.11 1.46 4.57 -51.93 -0.24 1.23 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -28.66 369.33 -9.68 -38.33 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -9.89 Total: -0.34 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.49 Total: -42.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.66 -9.68 -38.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.916 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds