Wall clock time and date at job start Tue Mar 31 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46698 * 2 1 4 4 C 1.53003 * 109.47093 * 240.00689 * 2 1 3 5 5 C 1.50701 * 109.47165 * 64.99456 * 4 2 1 6 6 H 1.07994 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99648 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00558 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99662 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47411 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46812 * 120.00288 * 9 7 5 12 12 H 1.48499 * 109.47338 * 240.00003 * 9 7 5 13 13 C 1.52997 * 109.47469 * 120.00432 * 2 1 3 14 14 N 1.46904 * 109.46970 * 295.00004 * 13 2 1 15 15 C 1.46901 * 110.99647 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.46691 * 174.89919 * 15 14 13 17 17 H 1.09003 * 109.46181 * 52.67495 * 16 15 14 18 18 N 1.46853 * 109.46069 * 172.64721 * 16 15 14 19 19 C 1.46899 * 110.99906 * 305.85433 * 18 16 15 20 20 C 1.46844 * 111.19823 * 181.75972 * 18 16 15 21 21 C 1.53039 * 109.52034 * 298.25870 * 20 18 16 22 22 C 1.53116 * 109.28014 * 59.18065 * 21 20 18 23 23 C 1.53029 * 109.46291 * 292.69952 * 16 15 14 24 24 C 1.52997 * 109.50358 * 300.74772 * 23 16 15 25 25 C 1.53002 * 109.50269 * 60.86613 * 23 16 15 26 26 H 1.08993 * 109.47300 * 59.99854 * 1 2 3 27 27 H 1.09004 * 109.46698 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47244 * 299.99276 * 1 2 3 29 29 H 1.09001 * 109.46927 * 184.99765 * 4 2 1 30 30 H 1.08998 * 109.46850 * 304.99505 * 4 2 1 31 31 H 0.96998 * 120.00147 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47220 * 54.99869 * 13 2 1 33 33 H 1.09001 * 109.47184 * 174.99970 * 13 2 1 34 34 H 1.00896 * 110.99844 * 56.04465 * 14 13 2 35 35 H 1.08999 * 109.47100 * 294.89135 * 15 14 13 36 36 H 1.08992 * 109.47377 * 54.90065 * 15 14 13 37 37 H 1.09001 * 109.47061 * 66.77077 * 19 18 16 38 38 H 1.09004 * 109.47122 * 186.77137 * 19 18 16 39 39 H 1.09002 * 109.47429 * 306.77227 * 19 18 16 40 40 H 1.09004 * 109.46363 * 58.26945 * 20 18 16 41 41 H 1.08996 * 109.46248 * 178.24219 * 20 18 16 42 42 H 1.09002 * 109.50694 * 179.12272 * 21 20 18 43 43 H 1.09005 * 109.50522 * 299.19977 * 21 20 18 44 44 H 1.08999 * 109.52741 * 62.25024 * 22 21 20 45 45 H 1.09005 * 109.52436 * 182.44529 * 22 21 20 46 46 H 1.08998 * 109.47234 * 60.00265 * 24 23 16 47 47 H 1.09006 * 109.46997 * 179.97438 * 24 23 16 48 48 H 1.08997 * 109.47437 * 299.99688 * 24 23 16 49 49 H 1.09002 * 109.47216 * 51.29023 * 25 23 16 50 50 H 1.09004 * 109.46875 * 171.29048 * 25 23 16 51 51 H 1.09002 * 109.46866 * 291.28716 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0798 0.9743 -2.3757 7 6 1.9922 -0.4020 -3.7284 8 7 2.6746 -1.5195 -3.8514 9 14 1.4985 0.5632 -5.2496 10 1 0.7431 1.7754 -4.8432 11 1 2.7169 0.9671 -5.9965 12 1 0.6438 -0.2852 -6.1184 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4456 15 6 2.1249 -0.6274 3.6671 16 6 1.8140 0.2525 4.8796 17 1 0.7571 0.5192 4.8734 18 7 2.1254 -0.4841 6.1113 19 6 1.4331 -1.7794 6.1394 20 6 1.8013 0.3116 7.3022 21 6 2.6483 1.5862 7.3116 22 6 2.3617 2.3930 6.0422 23 6 2.6614 1.5252 4.8168 24 6 4.1449 1.1512 4.8061 25 6 2.3207 2.3033 3.5442 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.1263 -0.7993 -1.2057 30 1 1.6054 -1.7197 -1.2953 31 1 2.9212 -1.8427 -4.7321 32 1 1.6055 -1.7199 1.2950 33 1 3.1264 -0.7995 1.2054 34 1 0.6530 0.1791 2.4753 35 1 1.6214 -1.5879 3.7766 36 1 3.2011 -0.7868 3.6002 37 1 1.8350 -2.4232 5.3569 38 1 1.5835 -2.2509 7.1106 39 1 0.3672 -1.6255 5.9714 40 1 0.7445 0.5780 7.2844 41 1 2.0136 -0.2722 8.1978 42 1 2.3964 2.1842 8.1875 43 1 3.7051 1.3207 7.3439 44 1 1.3136 2.6920 6.0294 45 1 2.9948 3.2802 6.0238 46 1 4.3569 0.5306 3.9355 47 1 4.7479 2.0581 4.7609 48 1 4.3868 0.5985 5.7139 49 1 1.2409 2.4364 3.4777 50 1 2.8059 3.2789 3.5741 51 1 2.6728 1.7489 2.6742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602645183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:39 Heat of formation + Delta-G solvation = -16.125362 kcal Electronic energy + Delta-G solvation = -23852.359542 eV Core-core repulsion = 20785.659274 eV Total energy + Delta-G solvation = -3066.700269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24348 -36.85893 -35.01493 -34.23888 -32.45133 -31.23651 -27.94159 -27.09844 -26.80498 -26.63145 -25.65935 -24.12346 -22.14739 -21.44307 -21.18886 -18.99728 -18.28717 -16.46012 -15.99696 -15.73342 -15.51958 -14.99406 -14.58881 -14.35963 -14.13198 -13.61449 -13.57877 -13.29736 -12.92327 -12.78886 -12.50576 -12.35107 -12.15835 -12.00496 -11.86530 -11.68041 -11.48308 -11.35999 -11.23865 -11.15987 -10.93020 -10.87031 -10.72060 -10.37223 -10.32676 -10.19209 -10.12846 -10.01022 -9.68533 -9.12512 -8.92487 -8.43488 -8.31598 -7.88415 -5.96156 -3.97120 3.33061 3.40746 3.44736 3.66565 4.45576 4.51985 4.68354 4.74763 4.80037 4.91195 5.15837 5.22996 5.24885 5.30189 5.39792 5.42232 5.46354 5.53673 5.61471 5.68497 5.76958 5.79048 5.80412 5.83412 5.88302 5.93960 5.99525 6.02973 6.08483 6.13209 6.28596 6.31656 6.32732 6.42421 6.48851 6.57996 6.61556 6.89474 6.97525 7.00879 7.02566 7.12788 7.19707 7.40398 7.66480 7.72449 7.88275 8.04487 8.48328 9.09664 9.66334 11.15395 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.003221 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.307108 B = 8690.257335 C = 9015.920776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.679 5.679 15 C 0.057 3.943 16 C 0.100 3.900 17 H 0.036 0.964 18 N -0.536 5.536 19 C 0.021 3.979 20 C 0.059 3.941 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.044 4.044 24 C -0.134 4.134 25 C -0.141 4.141 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.022 0.978 33 H 0.067 0.933 34 H 0.335 0.665 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.061 0.939 49 H 0.043 0.957 50 H 0.035 0.965 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 3.642 23.030 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.310 5.310 15 C -0.072 4.072 16 C -0.008 4.008 17 H 0.054 0.946 18 N -0.261 5.261 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.045 4.045 24 C -0.191 4.191 25 C -0.199 4.199 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.429 3.849 22.878 23.204 hybrid contribution -1.832 -0.240 -0.811 2.018 sum -2.261 3.609 22.067 22.474 Atomic orbital electron populations 1.21736 0.96809 1.00323 1.00203 1.21210 0.94739 1.00077 0.94153 0.91604 1.19111 0.96130 0.95330 0.90409 1.21279 1.34459 1.08241 0.90986 0.92525 1.25023 0.95371 0.95090 0.99100 1.69977 1.39235 1.21239 1.23231 0.86587 0.78255 0.80135 0.83335 1.19751 1.21087 1.21165 1.22146 1.00366 0.94417 0.89567 1.60843 1.19188 1.49550 1.01436 1.22115 1.01779 0.94210 0.89107 1.21628 0.96948 0.93634 0.88596 0.94606 1.61850 1.58296 1.03926 1.01994 1.22425 0.96078 0.91698 1.02475 1.22063 0.97278 0.94765 0.92844 1.21641 1.00996 0.95348 0.97698 1.21722 1.00944 0.98082 0.94373 1.20412 0.95668 0.93252 0.95125 1.21840 0.94354 1.00614 1.02269 1.22104 1.00639 0.98527 0.98650 0.91933 0.94153 0.95022 0.96666 0.96845 0.93178 0.96016 0.91438 0.84666 0.95513 0.89865 0.90884 0.91714 0.95886 0.95335 0.91069 0.92032 0.90815 0.92668 0.91909 0.92366 0.93747 0.91991 0.93811 0.94642 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.12 16 2 C -0.08 -1.66 2.54 -90.62 -0.23 -1.89 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.55 7.05 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.07 5.14 -3.82 -0.02 1.05 16 14 N -0.68 -9.37 3.01 -113.78 -0.34 -9.72 16 15 C 0.06 0.71 4.60 -3.82 -0.02 0.70 16 16 C 0.10 1.13 1.41 -67.72 -0.10 1.04 16 17 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 18 N -0.54 -5.53 4.03 -234.92 -0.95 -6.48 16 19 C 0.02 0.20 8.89 60.06 0.53 0.73 16 20 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 21 C -0.12 -1.04 5.74 -26.65 -0.15 -1.19 16 22 C -0.11 -1.11 4.78 -26.61 -0.13 -1.24 16 23 C -0.04 -0.49 0.54 -154.43 -0.08 -0.57 16 24 C -0.13 -1.51 7.67 37.16 0.29 -1.23 16 25 C -0.14 -1.75 7.25 37.16 0.27 -1.48 16 26 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.14 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.33 4.52 7.04 -39.29 -0.28 4.25 16 35 H 0.03 0.33 6.06 -51.93 -0.31 0.02 16 36 H 0.08 1.11 6.03 -51.93 -0.31 0.80 16 37 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 38 H 0.06 0.52 7.97 -51.93 -0.41 0.10 16 39 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.73 6.26 -51.93 -0.33 0.40 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 49 H 0.04 0.54 8.13 -51.93 -0.42 0.12 16 50 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 51 H 0.10 1.48 5.87 -51.93 -0.30 1.18 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -28.56 369.66 -9.75 -38.31 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -9.91 Total: 0.11 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 0.16 Total: -18.21 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.55 Total: -42.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.56 -9.75 -38.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.183 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds