Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 N 1.46899 * 109.47242 * 174.88147 * 3 2 1 5 5 C 1.46901 * 110.99994 * 75.55967 * 4 3 2 6 6 C 1.53001 * 109.47037 * 199.61015 * 5 4 3 7 7 N 1.46892 * 109.47441 * 174.59316 * 6 5 4 8 8 C 1.48536 * 110.99804 * 52.60371 * 7 6 5 9 9 C 1.54940 * 103.22529 * 159.72271 * 8 7 6 10 10 C 1.54588 * 102.92409 * 322.58397 * 9 8 7 11 11 C 1.47899 * 111.00319 * 169.99853 * 7 6 5 12 12 C 1.46901 * 110.99949 * 199.51418 * 4 3 2 13 13 C 1.53006 * 109.46919 * 66.04468 * 12 4 3 14 14 H 1.09002 * 109.47218 * 304.99973 * 13 12 4 15 15 C 1.52998 * 109.46881 * 64.99946 * 13 12 4 16 16 C 1.52996 * 109.46847 * 185.00127 * 13 12 4 17 17 C 1.50707 * 109.47032 * 175.00124 * 16 13 12 18 18 H 1.07999 * 119.99645 * 359.97438 * 17 16 13 19 19 C 1.37874 * 119.99682 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00687 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99593 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47070 * 59.99915 * 21 19 17 23 23 H 1.48498 * 109.47155 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47064 * 299.99790 * 21 19 17 25 25 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46663 * 299.99921 * 1 2 3 27 27 H 1.09000 * 109.47164 * 60.00300 * 1 2 3 28 28 H 1.09003 * 109.46876 * 239.99588 * 2 1 3 29 29 H 1.09000 * 109.47164 * 119.99700 * 2 1 3 30 30 H 1.08998 * 109.47383 * 54.87731 * 3 2 1 31 31 H 1.09006 * 109.46663 * 294.87502 * 3 2 1 32 32 H 1.09002 * 109.47298 * 79.61214 * 5 4 3 33 33 H 1.08992 * 109.47256 * 319.60803 * 5 4 3 34 34 H 1.09001 * 109.47130 * 294.59431 * 6 5 4 35 35 H 1.09001 * 109.46899 * 54.58863 * 6 5 4 36 36 H 1.09003 * 110.66874 * 278.15418 * 8 7 6 37 37 H 1.08995 * 110.66873 * 41.29037 * 8 7 6 38 38 H 1.09003 * 110.72453 * 204.22447 * 9 8 7 39 39 H 1.09006 * 110.72249 * 80.94711 * 9 8 7 40 40 H 1.09000 * 110.31058 * 263.04060 * 10 9 8 41 41 H 1.08998 * 110.39357 * 140.91650 * 10 9 8 42 42 H 1.09001 * 109.91869 * 333.51059 * 11 7 6 43 43 H 1.08996 * 109.91712 * 94.60568 * 11 7 6 44 44 H 1.09000 * 109.46841 * 186.04060 * 12 4 3 45 45 H 1.08998 * 109.47128 * 306.04563 * 12 4 3 46 46 H 1.09009 * 109.46993 * 179.97438 * 15 13 12 47 47 H 1.09002 * 109.47156 * 299.99479 * 15 13 12 48 48 H 1.08993 * 109.47289 * 60.00010 * 15 13 12 49 49 H 1.09009 * 109.47034 * 294.99451 * 16 13 12 50 50 H 1.08997 * 109.47493 * 54.99527 * 16 13 12 51 51 H 0.96994 * 120.00816 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4444 0.1236 5 6 4.1397 1.0637 -1.1448 6 6 5.5743 0.6035 -0.8781 7 7 6.1672 0.1014 -2.1247 8 6 6.0326 1.0984 -3.2175 9 6 7.1211 0.6631 -4.2306 10 6 8.2801 0.2037 -3.3166 11 6 7.6195 -0.1289 -1.9658 12 6 3.9914 2.7508 0.5857 13 6 3.5051 3.0002 2.0148 14 1 2.4200 2.9035 2.0514 15 6 4.1405 1.9749 2.9559 16 6 3.9065 4.4106 2.4511 17 6 3.3228 4.7013 3.8099 18 1 2.7251 3.9548 4.3117 19 6 3.5521 5.9201 4.4122 20 7 4.2804 6.8289 3.8014 21 14 2.8280 6.2806 6.0961 22 1 3.3428 5.2927 7.0780 23 1 3.2187 7.6491 6.5202 24 1 1.3476 6.1865 6.0288 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6037 1.9822 0.8405 31 1 1.7535 1.9291 -0.9324 32 1 4.1524 1.9218 -1.8168 33 1 3.5769 0.2510 -1.6038 34 1 6.1625 1.4435 -0.5086 35 1 5.5681 -0.1916 -0.1326 36 1 5.0422 1.0425 -3.6694 37 1 6.2316 2.1041 -2.8475 38 1 7.4294 1.5047 -4.8509 39 1 6.7659 -0.1623 -4.8476 40 1 9.0070 1.0068 -3.1947 41 1 8.7619 -0.6821 -3.7304 42 1 8.0160 0.5235 -1.1879 43 1 7.8038 -1.1712 -1.7057 44 1 5.0812 2.7594 0.5660 45 1 3.6099 3.5336 -0.0698 46 1 3.7944 2.1529 3.9742 47 1 3.8545 0.9701 2.6450 48 1 5.2256 2.0715 2.9193 49 1 4.9932 4.4804 2.5001 50 1 3.5280 5.1355 1.7305 51 1 4.4420 7.6863 4.2252 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602663255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -19.757467 kcal Electronic energy + Delta-G solvation = -23241.964585 eV Core-core repulsion = 20175.106816 eV Total energy + Delta-G solvation = -3066.857769 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28528 -37.96117 -34.77539 -33.54302 -32.41971 -31.43841 -29.13297 -27.77331 -26.95175 -26.21900 -24.22249 -23.04810 -21.88282 -21.15512 -20.82825 -20.02840 -18.79524 -16.37717 -16.26550 -16.18293 -15.39485 -14.85410 -14.62870 -14.50324 -14.27457 -14.06689 -13.75321 -13.22810 -12.92959 -12.68553 -12.57797 -12.37894 -12.15790 -11.84091 -11.67446 -11.56009 -11.40869 -11.36473 -11.30096 -11.14230 -10.96505 -10.83532 -10.78337 -10.73856 -10.58773 -10.36828 -10.24913 -10.16966 -9.52890 -9.10368 -8.93372 -8.50213 -8.31139 -7.97701 -5.96197 -3.97286 3.35208 3.39462 3.42060 3.73861 4.29627 4.48857 4.52755 4.54980 4.79849 5.06955 5.12082 5.13891 5.14270 5.28626 5.33986 5.39513 5.44721 5.51067 5.58417 5.59879 5.64422 5.67173 5.74476 5.78000 5.79597 5.83142 5.87444 5.98046 6.01886 6.04403 6.10807 6.15026 6.20902 6.33533 6.39018 6.44775 6.60541 6.73914 6.78035 6.94681 7.05658 7.18843 7.24469 7.45244 7.49371 7.71032 7.87233 8.04030 8.48363 9.08925 9.66003 11.15340 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.003754 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.868159 B = 7457.668408 C = 8789.124317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.052 3.948 4 N -0.534 5.534 5 C 0.057 3.943 6 C 0.053 3.947 7 N -0.518 5.518 8 C 0.031 3.969 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.035 3.965 12 C 0.060 3.940 13 C -0.081 4.081 14 H 0.057 0.943 15 C -0.121 4.121 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -14.382 -14.625 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.076 4.076 4 N -0.258 5.258 5 C -0.071 4.071 6 C -0.076 4.076 7 N -0.243 5.243 8 C -0.096 4.096 9 C -0.162 4.162 10 C -0.169 4.169 11 C -0.093 4.093 12 C -0.067 4.067 13 C -0.100 4.100 14 H 0.075 0.925 15 C -0.178 4.178 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.033 0.967 50 H 0.029 0.971 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.056 -15.029 -14.358 20.887 hybrid contribution -0.098 1.806 0.591 1.902 sum 1.958 -13.223 -13.768 19.190 Atomic orbital electron populations 1.21741 0.96078 1.01299 1.01770 1.21492 0.94876 0.96797 1.02267 1.22206 0.87763 0.96881 1.00757 1.61918 1.05435 1.30712 1.27774 1.22093 0.94791 0.99360 0.90890 1.22272 0.94686 0.99247 0.91354 1.64797 1.12441 1.40907 1.06122 1.23251 0.99652 0.94226 0.92506 1.22481 0.95239 1.01037 0.97450 1.22394 0.97893 1.01357 0.95294 1.22858 0.87809 1.01690 0.96918 1.22347 0.99628 0.87301 0.97432 1.21244 0.99127 0.98291 0.91308 0.92493 1.21564 0.99375 0.97449 0.99450 1.19118 0.96645 0.89284 0.95936 1.21200 1.31622 0.99497 1.02714 0.92621 1.25012 0.95409 0.96423 0.97657 1.69949 1.39226 1.06271 1.38300 0.86701 0.79558 0.77268 0.84733 1.20258 1.21394 1.20311 0.92918 0.92511 0.93152 0.92584 0.91151 0.89803 0.95416 0.95242 0.90474 0.94484 0.89705 0.90141 0.93673 0.91225 0.90853 0.91590 0.91126 0.93612 0.90396 0.91527 0.95563 0.92864 0.93851 0.94389 0.96716 0.97064 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.39 5.98 -26.73 -0.16 -1.55 16 3 C 0.05 0.72 4.83 -3.82 -0.02 0.71 16 4 N -0.53 -7.96 3.82 -234.62 -0.90 -8.86 16 5 C 0.06 0.75 4.31 -3.82 -0.02 0.73 16 6 C 0.05 0.67 5.05 -3.83 -0.02 0.65 16 7 N -0.52 -5.96 5.40 -230.45 -1.24 -7.20 16 8 C 0.03 0.33 5.14 -1.89 -0.01 0.32 16 9 C -0.12 -1.06 7.06 -24.87 -0.18 -1.24 16 10 C -0.13 -1.11 6.93 -25.38 -0.18 -1.29 16 11 C 0.04 0.36 6.70 -2.75 -0.02 0.34 16 12 C 0.06 1.06 4.17 -3.82 -0.02 1.04 16 13 C -0.08 -1.67 2.28 -90.62 -0.21 -1.88 16 14 H 0.06 1.19 6.08 -51.93 -0.32 0.88 16 15 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 17 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 18 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 21 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.64 6.88 -51.93 -0.36 0.28 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.31 5.82 -51.93 -0.30 1.01 16 31 H 0.03 0.38 8.00 -51.93 -0.42 -0.04 16 32 H 0.03 0.39 6.97 -51.93 -0.36 0.03 16 33 H 0.08 0.97 6.55 -51.93 -0.34 0.63 16 34 H 0.04 0.52 6.63 -51.93 -0.34 0.17 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 37 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.19 6.72 -51.93 -0.35 0.84 16 45 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 46 H 0.05 1.12 6.95 -51.92 -0.36 0.75 16 47 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -29.27 383.94 -11.45 -40.72 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -10.18 Total: -2.80 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.63 Total: -18.04 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -1.40 Total: -42.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.27 -11.45 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602663255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.966 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds