Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47167 * 2 1 4 4 C 1.46892 * 110.99771 * 296.68537 * 3 2 1 5 5 C 1.52999 * 109.47622 * 288.20483 * 4 3 2 6 6 C 1.53001 * 109.47674 * 179.90780 * 5 4 3 7 7 N 1.46896 * 109.47472 * 180.02562 * 6 5 4 8 8 C 1.48535 * 110.99770 * 52.60158 * 7 6 5 9 9 C 1.54942 * 103.22395 * 159.72328 * 8 7 6 10 10 C 1.54600 * 102.91959 * 322.58537 * 9 8 7 11 11 C 1.47900 * 111.00378 * 169.99990 * 7 6 5 12 12 C 1.46893 * 111.00326 * 60.64509 * 3 2 1 13 13 C 1.53001 * 109.47383 * 66.04149 * 12 3 2 14 14 H 1.08993 * 109.47396 * 304.99998 * 13 12 3 15 15 C 1.52994 * 109.46960 * 65.00623 * 13 12 3 16 16 C 1.53003 * 109.47232 * 185.00100 * 13 12 3 17 17 C 1.50694 * 109.47100 * 175.00035 * 16 13 12 18 18 H 1.08002 * 120.00174 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99958 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00113 * 179.72624 * 19 17 16 21 21 Si 1.86799 * 119.99902 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47228 * 269.72081 * 21 19 17 23 23 H 1.48500 * 109.47405 * 29.72144 * 21 19 17 24 24 H 1.48505 * 109.47321 * 149.72418 * 21 19 17 25 25 H 1.08995 * 109.47368 * 181.09701 * 1 2 3 26 26 H 1.09012 * 109.46779 * 301.09227 * 1 2 3 27 27 H 1.08999 * 109.47268 * 61.08704 * 1 2 3 28 28 H 1.09001 * 109.47249 * 239.99799 * 2 1 3 29 29 H 1.09008 * 109.46955 * 120.00006 * 2 1 3 30 30 H 1.08995 * 109.47388 * 48.21061 * 4 3 2 31 31 H 1.09011 * 109.46896 * 168.20540 * 4 3 2 32 32 H 1.09003 * 109.46908 * 299.91012 * 5 4 3 33 33 H 1.08996 * 109.47052 * 59.90705 * 5 4 3 34 34 H 1.08995 * 109.46769 * 300.00628 * 6 5 4 35 35 H 1.09005 * 109.46751 * 60.00090 * 6 5 4 36 36 H 1.08997 * 110.66995 * 278.15479 * 8 7 6 37 37 H 1.08997 * 110.66694 * 41.28785 * 8 7 6 38 38 H 1.08999 * 110.72334 * 204.22995 * 9 8 7 39 39 H 1.08998 * 110.72464 * 80.94411 * 9 8 7 40 40 H 1.08996 * 110.30952 * 263.04061 * 10 9 8 41 41 H 1.09003 * 110.30297 * 140.87581 * 10 9 8 42 42 H 1.09004 * 109.91301 * 333.51627 * 11 7 6 43 43 H 1.09001 * 109.91453 * 94.59809 * 11 7 6 44 44 H 1.09000 * 109.46984 * 306.04529 * 12 3 2 45 45 H 1.08997 * 109.47590 * 186.04430 * 12 3 2 46 46 H 1.09001 * 109.47838 * 59.99653 * 15 13 12 47 47 H 1.08995 * 109.47422 * 180.02562 * 15 13 12 48 48 H 1.09004 * 109.47025 * 299.99669 * 15 13 12 49 49 H 1.09003 * 109.47030 * 55.00461 * 16 13 12 50 50 H 1.08998 * 109.47089 * 295.00367 * 16 13 12 51 51 H 0.97003 * 120.00161 * 180.27965 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6145 2.0865 -1.2253 5 6 2.4194 1.5496 -2.4105 6 6 1.9957 2.2787 -3.6871 7 7 2.7682 1.7627 -4.8251 8 6 2.6782 0.2821 -4.9018 9 6 3.0643 -0.0208 -6.3715 10 6 2.4153 1.1484 -7.1474 11 6 2.2263 2.2666 -6.1057 12 6 1.5614 2.1055 1.1953 13 6 2.2061 1.4914 2.4395 14 1 1.9944 0.4226 2.4685 15 6 3.7195 1.7105 2.3904 16 6 1.6346 2.1586 3.6921 17 6 2.1768 1.4717 4.9189 18 1 2.8610 0.6425 4.8156 19 6 1.7995 1.9019 6.1734 20 7 2.2685 1.2990 7.2440 21 14 0.6156 3.3357 6.3521 22 1 1.3829 4.6050 6.4262 23 1 -0.2946 3.3753 5.1795 24 1 -0.1827 3.1669 7.5929 25 1 -0.3634 -1.0274 0.0197 26 1 -0.3633 0.5308 0.8801 27 1 -0.3634 0.4968 -0.8996 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 0.5518 1.9223 -1.4036 31 1 1.8030 3.1542 -1.1119 32 1 3.4820 1.7154 -2.2329 33 1 2.2322 0.4817 -2.5228 34 1 0.9332 2.1129 -3.8645 35 1 2.1830 3.3466 -3.5747 36 1 3.3854 -0.1825 -4.2148 37 1 1.6619 -0.0528 -4.6942 38 1 2.6461 -0.9752 -6.6913 39 1 4.1472 -0.0120 -6.4955 40 1 1.4512 0.8435 -7.5543 41 1 3.0753 1.4841 -7.9472 42 1 1.1664 2.4963 -5.9956 43 1 2.7697 3.1601 -6.4128 44 1 0.4768 2.0282 1.2724 45 1 1.8463 3.1547 1.1187 46 1 3.9312 2.7794 2.3614 47 1 4.1790 1.2727 3.2766 48 1 4.1267 1.2351 1.4980 49 1 0.5475 2.0795 3.6821 50 1 1.9223 3.2099 3.7072 51 1 1.9998 1.5991 8.1265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602664373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -12.109723 kcal Electronic energy + Delta-G solvation = -22908.547116 eV Core-core repulsion = 19842.020979 eV Total energy + Delta-G solvation = -3066.526138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.39849 -38.44511 -35.06356 -33.64277 -32.03928 -30.71434 -29.45217 -28.98484 -27.32465 -25.78106 -24.63058 -23.23984 -22.19820 -21.14729 -20.69667 -19.76825 -18.63634 -16.73774 -16.41906 -16.32630 -15.95798 -15.44716 -14.84098 -14.28070 -14.12719 -14.01582 -13.69782 -13.31137 -13.12048 -12.92676 -12.67205 -12.51017 -12.23606 -11.98822 -11.74960 -11.69343 -11.52380 -11.51516 -11.43551 -11.25210 -11.13149 -10.94129 -10.92303 -10.89018 -10.66732 -10.39885 -10.30553 -9.70570 -9.61150 -9.32920 -9.00953 -8.69038 -8.48552 -7.96424 -5.98954 -3.95384 3.33220 3.40480 3.44039 3.65663 4.13745 4.35031 4.40237 4.49371 4.62696 4.83529 4.95053 5.02902 5.15385 5.17606 5.24222 5.28163 5.34911 5.36271 5.43293 5.45770 5.48626 5.50345 5.55669 5.61852 5.65660 5.68382 5.75950 5.79256 5.84829 5.98955 6.02985 6.09098 6.19073 6.23043 6.35482 6.39330 6.52090 6.61232 6.67981 6.78282 6.90399 7.09660 7.20326 7.32814 7.36516 7.43823 7.55761 7.86767 8.61308 9.07281 9.64202 11.14531 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.037866 B = 0.002695 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.265921 B =10388.968011 C =10484.473956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.051 3.949 5 C -0.112 4.112 6 C 0.048 3.952 7 N -0.517 5.517 8 C 0.034 3.966 9 C -0.125 4.125 10 C -0.132 4.132 11 C 0.034 3.966 12 C 0.054 3.946 13 C -0.071 4.071 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.510 4.510 18 H 0.074 0.926 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.267 1.267 24 H -0.289 1.289 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.011 0.989 50 H 0.010 0.990 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -0.501 -27.631 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.252 5.252 4 C -0.078 4.078 5 C -0.150 4.150 6 C -0.080 4.080 7 N -0.241 5.241 8 C -0.094 4.094 9 C -0.163 4.163 10 C -0.170 4.170 11 C -0.094 4.094 12 C -0.073 4.073 13 C -0.090 4.090 14 H 0.080 0.920 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.192 1.192 24 H -0.216 1.216 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.029 0.971 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.050 -0.317 -27.338 27.360 hybrid contribution -2.512 0.632 0.197 2.598 sum -3.562 0.315 -27.141 27.376 Atomic orbital electron populations 1.22420 0.98817 1.02084 1.01912 1.22187 0.92523 0.90763 1.02642 1.62201 1.59333 1.02086 1.01628 1.22085 0.96943 0.98503 0.90225 1.21601 1.01757 0.99571 0.92092 1.22292 0.94741 1.00188 0.90798 1.64800 1.51212 1.06160 1.01950 1.23248 1.00128 0.88864 0.97154 1.22499 1.01416 0.97845 0.94587 1.22397 1.00907 0.95558 0.98114 1.22875 0.98202 0.98490 0.89820 1.22399 0.97297 0.97653 0.89965 1.21010 0.95762 0.99639 0.92594 0.91991 1.21587 0.95652 1.00248 1.00634 1.19622 0.95671 0.95845 0.93609 1.21133 1.27683 1.17051 0.88922 0.90839 1.25034 0.96042 0.96590 0.96002 1.69917 1.45065 1.41663 0.97875 0.86810 0.81823 0.83329 0.77469 1.20390 1.19175 1.21551 0.92407 0.91771 0.93100 0.91403 0.89896 0.94840 0.91199 0.90254 0.91963 0.95045 0.90582 0.89684 0.93846 0.91155 0.90671 0.91672 0.91034 0.93935 0.90392 0.94948 0.91551 0.94343 0.92369 0.93649 0.97099 0.97149 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 9.28 37.16 0.34 -2.06 16 2 C 0.05 0.62 5.70 -3.82 -0.02 0.60 16 3 N -0.53 -7.46 4.12 -234.64 -0.97 -8.43 16 4 C 0.05 0.60 4.84 -3.83 -0.02 0.58 16 5 C -0.11 -1.17 4.92 -26.73 -0.13 -1.30 16 6 C 0.05 0.46 5.03 -3.83 -0.02 0.44 16 7 N -0.52 -4.89 5.40 -230.46 -1.24 -6.13 16 8 C 0.03 0.28 5.10 -1.89 -0.01 0.27 16 9 C -0.13 -0.88 7.06 -24.87 -0.18 -1.05 16 10 C -0.13 -0.87 6.93 -25.38 -0.18 -1.05 16 11 C 0.03 0.27 6.69 -2.76 -0.02 0.25 16 12 C 0.05 0.89 4.11 -3.83 -0.02 0.87 16 13 C -0.07 -1.41 2.26 -90.62 -0.20 -1.62 16 14 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 15 C -0.12 -2.41 8.89 37.15 0.33 -2.08 16 16 C -0.01 -0.23 3.51 -27.88 -0.10 -0.33 16 17 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 18 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 19 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 20 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 21 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.91 6.23 -51.92 -0.32 0.59 16 27 H 0.05 0.58 6.30 -51.93 -0.33 0.26 16 28 H 0.07 0.80 6.58 -51.93 -0.34 0.46 16 29 H 0.08 1.22 6.34 -51.92 -0.33 0.89 16 30 H 0.03 0.39 5.92 -51.93 -0.31 0.08 16 31 H 0.07 0.83 7.81 -51.92 -0.41 0.42 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.64 5.34 -51.93 -0.28 0.37 16 34 H 0.03 0.29 7.81 -51.93 -0.41 -0.11 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.74 7.66 -51.93 -0.40 0.35 16 37 H 0.04 0.37 8.00 -51.93 -0.42 -0.05 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.04 0.33 7.57 -51.93 -0.39 -0.07 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.54 6.00 -51.93 -0.31 0.23 16 45 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 48 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 49 H 0.01 0.26 7.19 -51.93 -0.37 -0.11 16 50 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -30.07 374.56 -10.94 -41.01 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -9.86 Total: -2.55 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -0.62 Total: -19.50 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -1.44 Total: -41.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.07 -10.94 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602664373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.896 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds