Wall clock time and date at job start Tue Mar 31 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47274 * 2 1 4 4 C 1.46904 * 111.00286 * 299.29179 * 3 2 1 5 5 C 1.53002 * 109.46972 * 293.94333 * 4 3 2 6 6 C 1.52999 * 109.46895 * 185.13775 * 5 4 3 7 7 N 1.46900 * 109.47167 * 179.97438 * 6 5 4 8 8 C 1.48536 * 110.99950 * 52.60025 * 7 6 5 9 9 C 1.54943 * 103.22556 * 159.72090 * 8 7 6 10 10 C 1.54589 * 102.92094 * 322.58647 * 9 8 7 11 11 C 1.47903 * 111.00063 * 169.99875 * 7 6 5 12 12 C 1.46907 * 110.99830 * 63.24419 * 3 2 1 13 13 C 1.52998 * 109.46901 * 69.15190 * 12 3 2 14 14 H 1.09000 * 109.47058 * 303.09946 * 13 12 3 15 15 C 1.52996 * 109.46975 * 183.09582 * 13 12 3 16 16 C 1.52998 * 109.47256 * 63.09731 * 13 12 3 17 17 C 1.50700 * 109.47345 * 184.99897 * 16 13 12 18 18 H 1.08004 * 119.99695 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00020 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99392 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00090 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47165 * 90.00165 * 21 19 17 23 23 H 1.48502 * 109.47233 * 210.00048 * 21 19 17 24 24 H 1.48499 * 109.47196 * 329.99880 * 21 19 17 25 25 H 1.08996 * 109.46802 * 299.67719 * 1 2 3 26 26 H 1.09003 * 109.47063 * 59.68248 * 1 2 3 27 27 H 1.08997 * 109.47145 * 179.67970 * 1 2 3 28 28 H 1.09005 * 109.46949 * 240.00191 * 2 1 3 29 29 H 1.08999 * 109.47454 * 120.00360 * 2 1 3 30 30 H 1.08996 * 109.46875 * 53.94077 * 4 3 2 31 31 H 1.08995 * 109.47501 * 173.94068 * 4 3 2 32 32 H 1.08998 * 109.46758 * 305.13278 * 5 4 3 33 33 H 1.08997 * 109.47000 * 65.13810 * 5 4 3 34 34 H 1.09006 * 109.47364 * 299.99859 * 6 5 4 35 35 H 1.09000 * 109.47161 * 59.99687 * 6 5 4 36 36 H 1.08995 * 110.66715 * 278.16107 * 8 7 6 37 37 H 1.08998 * 110.66526 * 41.29013 * 8 7 6 38 38 H 1.09000 * 110.72130 * 204.23145 * 9 8 7 39 39 H 1.08998 * 110.71855 * 80.94573 * 9 8 7 40 40 H 1.09000 * 110.31256 * 263.03973 * 10 9 8 41 41 H 1.09005 * 110.30683 * 140.87232 * 10 9 8 42 42 H 1.08992 * 109.91632 * 333.50694 * 11 7 6 43 43 H 1.08998 * 109.91456 * 94.60855 * 11 7 6 44 44 H 1.09003 * 109.47002 * 309.14949 * 12 3 2 45 45 H 1.08997 * 109.46813 * 189.15067 * 12 3 2 46 46 H 1.08994 * 109.47301 * 174.79016 * 15 13 12 47 47 H 1.09001 * 109.47291 * 54.78899 * 15 13 12 48 48 H 1.09005 * 109.47351 * 294.79312 * 15 13 12 49 49 H 1.08998 * 109.47359 * 305.00410 * 16 13 12 50 50 H 1.09005 * 109.47009 * 64.99637 * 16 13 12 51 51 H 0.97001 * 119.99648 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5626 2.1050 -1.1961 5 6 2.2090 1.4906 -2.4393 6 6 1.8351 2.3185 -3.6704 7 7 2.4562 1.7291 -4.8641 8 6 2.1345 0.2830 -4.9724 9 6 2.3895 -0.0257 -6.4692 10 6 1.8883 1.2543 -7.1764 11 6 1.9306 2.3527 -6.0979 12 6 1.6131 2.0871 1.2247 13 6 2.3689 1.5053 2.4209 14 1 2.1805 0.4335 2.4834 15 6 1.8894 2.1832 3.7059 16 6 3.8689 1.7499 2.2444 17 6 4.6231 1.0712 3.3587 18 1 4.0863 0.5201 4.1167 19 6 5.9985 1.1538 3.4104 20 7 6.6565 0.5619 4.3831 21 14 6.9270 2.1064 2.0991 22 1 7.0741 3.5212 2.5258 23 1 8.2711 1.5046 1.9084 24 1 6.1739 2.0508 0.8204 25 1 -0.3633 0.5088 0.8928 26 1 -0.3633 0.5188 -0.8871 27 1 -0.3633 -1.0276 -0.0057 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.4782 2.0276 -1.2745 31 1 1.8473 3.1543 -1.1195 32 1 3.2925 1.4854 -2.3205 33 1 1.8524 0.4686 -2.5668 34 1 0.7516 2.3239 -3.7893 35 1 2.1917 3.3407 -3.5429 36 1 2.7972 -0.3070 -4.3395 37 1 1.0913 0.1007 -4.7144 38 1 1.8122 -0.8936 -6.7878 39 1 3.4525 -0.1784 -6.6558 40 1 0.8681 1.1143 -7.5340 41 1 2.5483 1.5120 -8.0048 42 1 0.9265 2.7378 -5.9206 43 1 2.5883 3.1624 -6.4139 44 1 0.5410 1.9617 1.3764 45 1 1.8450 3.1478 1.1293 46 1 2.3592 1.7059 4.5657 47 1 0.8064 2.0883 3.7844 48 1 2.1608 3.2387 3.6830 49 1 4.1930 1.3438 1.2863 50 1 4.0679 2.8213 2.2709 51 1 7.6241 0.6197 4.4194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602664374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:57 Heat of formation + Delta-G solvation = -10.446499 kcal Electronic energy + Delta-G solvation = -23244.301173 eV Core-core repulsion = 20177.847159 eV Total energy + Delta-G solvation = -3066.454015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.33561 -38.38614 -35.02166 -33.54092 -31.99753 -30.61730 -29.40445 -28.91138 -27.54042 -25.61972 -24.45602 -23.16689 -22.14481 -21.09215 -20.70756 -19.74494 -18.54731 -16.64247 -16.40139 -16.26434 -15.88180 -15.38041 -14.83330 -14.24543 -14.15900 -13.77464 -13.57435 -13.29948 -13.13209 -12.80965 -12.55740 -12.45819 -12.19074 -11.94677 -11.77636 -11.67603 -11.46214 -11.44129 -11.40050 -11.26242 -11.04259 -10.95062 -10.87902 -10.82275 -10.70050 -10.42334 -10.14584 -9.61177 -9.57418 -9.29762 -8.87283 -8.60883 -8.38125 -7.82812 -5.89814 -3.85017 3.43201 3.50508 3.59993 3.73413 4.20907 4.41386 4.46658 4.60900 4.68718 4.91042 5.01167 5.08692 5.20404 5.23388 5.29599 5.32827 5.42203 5.45983 5.47566 5.50673 5.51636 5.56284 5.58373 5.68342 5.69630 5.72336 5.76815 5.83114 5.91242 5.98938 6.04522 6.10978 6.22943 6.24750 6.30858 6.38030 6.42059 6.53040 6.68933 6.86676 6.90689 7.03411 7.18121 7.45432 7.48897 7.59776 7.77529 7.99525 8.70640 9.16364 9.75000 11.23927 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.003811 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.194574 B = 7346.199236 C = 8358.753227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 N -0.525 5.525 4 C 0.054 3.946 5 C -0.116 4.116 6 C 0.050 3.950 7 N -0.517 5.517 8 C 0.034 3.966 9 C -0.125 4.125 10 C -0.131 4.131 11 C 0.035 3.965 12 C 0.058 3.942 13 C -0.074 4.074 14 H 0.061 0.939 15 C -0.133 4.133 16 C -0.001 4.001 17 C -0.511 4.511 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.911 5.911 21 Si 0.876 3.124 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.260 1.260 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.078 0.922 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.029 0.971 48 H 0.045 0.955 49 H 0.033 0.967 50 H 0.003 0.997 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 1.565 -20.445 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.081 4.081 3 N -0.247 5.247 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.078 4.078 7 N -0.241 5.241 8 C -0.094 4.094 9 C -0.163 4.163 10 C -0.169 4.169 11 C -0.094 4.094 12 C -0.070 4.070 13 C -0.092 4.092 14 H 0.079 0.921 15 C -0.191 4.191 16 C -0.039 4.039 17 C -0.549 4.549 18 H 0.087 0.913 19 C -0.136 4.136 20 N -0.551 5.551 21 Si 0.704 3.296 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.184 1.184 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.021 0.979 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.981 1.630 -20.334 24.179 hybrid contribution -1.192 0.480 -0.576 1.409 sum -14.173 2.110 -20.910 25.349 Atomic orbital electron populations 1.22420 0.99160 1.01825 1.01632 1.22198 0.91958 0.90834 1.03151 1.62132 1.59178 1.01930 1.01502 1.22069 0.96758 0.98275 0.90353 1.21641 1.02961 0.98689 0.92111 1.22282 0.96046 0.99378 0.90143 1.64799 1.54769 1.02927 1.01619 1.23252 0.99417 0.89915 0.96824 1.22497 1.01985 0.97168 0.94694 1.22396 1.01255 0.95131 0.98164 1.22874 0.98489 0.97620 0.90368 1.22336 0.96508 0.97957 0.90178 1.21022 0.97831 0.98940 0.91445 0.92067 1.21703 0.97879 1.00463 0.99073 1.19530 0.90676 0.95782 0.97864 1.21244 0.91480 1.32178 1.09961 0.91308 1.25008 0.97798 0.95383 0.95446 1.69929 1.07634 1.45003 1.32529 0.86817 0.79035 0.80080 0.83682 1.20708 1.21799 1.18403 0.92328 0.93010 0.92500 0.91151 0.89752 0.95155 0.91164 0.89906 0.91979 0.95119 0.90561 0.89631 0.93895 0.91179 0.90639 0.91713 0.91047 0.93985 0.90403 0.95555 0.91675 0.91568 0.95192 0.93619 0.94903 0.97851 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 9.27 37.16 0.34 -1.94 16 2 C 0.05 0.66 5.67 -3.83 -0.02 0.64 16 3 N -0.52 -8.24 3.97 -234.62 -0.93 -9.17 16 4 C 0.05 0.70 4.73 -3.82 -0.02 0.68 16 5 C -0.12 -1.40 4.66 -26.73 -0.12 -1.53 16 6 C 0.05 0.53 5.03 -3.82 -0.02 0.51 16 7 N -0.52 -5.56 5.40 -230.45 -1.24 -6.80 16 8 C 0.03 0.32 5.10 -1.89 -0.01 0.31 16 9 C -0.13 -1.00 7.06 -24.87 -0.18 -1.18 16 10 C -0.13 -0.98 6.93 -25.38 -0.18 -1.16 16 11 C 0.03 0.31 6.70 -2.75 -0.02 0.29 16 12 C 0.06 0.94 4.22 -3.82 -0.02 0.93 16 13 C -0.07 -1.46 2.29 -90.62 -0.21 -1.66 16 14 H 0.06 1.25 6.47 -51.93 -0.34 0.92 16 15 C -0.13 -2.49 8.92 37.16 0.33 -2.16 16 16 C 0.00 -0.03 3.45 -27.88 -0.10 -0.12 16 17 C -0.51 -14.70 9.03 -34.44 -0.31 -15.01 16 18 H 0.07 2.12 7.31 -52.48 -0.38 1.74 16 19 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.91 -28.80 13.96 55.43 0.77 -28.02 16 21 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 25 H 0.06 0.73 6.31 -51.93 -0.33 0.41 16 26 H 0.05 0.58 6.27 -51.93 -0.33 0.25 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 29 H 0.08 1.36 6.40 -51.93 -0.33 1.03 16 30 H 0.03 0.36 6.01 -51.93 -0.31 0.05 16 31 H 0.07 0.91 7.89 -51.93 -0.41 0.51 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.72 5.44 -51.93 -0.28 0.44 16 34 H 0.03 0.31 7.81 -51.93 -0.41 -0.10 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.87 7.66 -51.93 -0.40 0.48 16 37 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.04 0.35 7.57 -51.93 -0.39 -0.04 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.39 5.99 -51.93 -0.31 0.08 16 45 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 46 H 0.07 1.37 7.11 -51.93 -0.37 1.00 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.03 0.83 6.61 -51.93 -0.34 0.49 16 50 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 51 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -31.11 374.65 -10.92 -42.03 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -9.88 Total: -2.08 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.62 Total: -19.59 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -1.40 Total: -44.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.11 -10.92 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602664374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.588 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds