Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47024 * 2 1 4 4 C 1.52999 * 109.46759 * 119.99711 * 2 1 3 5 5 C 1.50703 * 109.47285 * 295.00180 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00134 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99977 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99866 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47155 * 90.00342 * 9 7 5 11 11 H 1.48502 * 109.46979 * 210.00063 * 9 7 5 12 12 H 1.48497 * 109.47090 * 329.99991 * 9 7 5 13 13 C 1.52997 * 109.47396 * 239.99482 * 2 1 3 14 14 N 1.46903 * 109.47035 * 65.00049 * 13 2 1 15 15 C 1.46897 * 111.00195 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47859 * 179.97438 * 19 18 17 21 21 C 1.48533 * 110.99670 * 52.60024 * 20 19 18 22 22 C 1.54936 * 103.22827 * 159.72645 * 21 20 19 23 23 C 1.54602 * 102.91755 * 322.58844 * 22 21 20 24 24 C 1.47895 * 111.00585 * 169.99973 * 20 19 18 25 25 H 1.08996 * 109.47529 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47350 * 300.00276 * 1 2 3 27 27 H 1.09004 * 109.46534 * 60.00426 * 1 2 3 28 28 H 1.09001 * 109.47177 * 54.99805 * 4 2 1 29 29 H 1.08998 * 109.47319 * 175.00189 * 4 2 1 30 30 H 0.96999 * 119.99779 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47319 * 305.00554 * 13 2 1 32 32 H 1.08993 * 109.46983 * 185.00185 * 13 2 1 33 33 H 1.00899 * 111.00270 * 303.95905 * 14 13 2 34 34 H 1.09001 * 109.46391 * 60.00431 * 15 14 13 35 35 H 1.09002 * 109.47472 * 300.00702 * 15 14 13 36 36 H 1.09001 * 109.46652 * 60.00605 * 16 15 14 37 37 H 1.08992 * 109.47514 * 300.00694 * 16 15 14 38 38 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 39 39 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 40 40 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 41 41 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 42 42 H 1.09002 * 109.47103 * 300.00247 * 19 18 17 43 43 H 1.09001 * 109.47066 * 60.00169 * 19 18 17 44 44 H 1.09002 * 110.67270 * 278.16471 * 21 20 19 45 45 H 1.08998 * 110.66667 * 41.29259 * 21 20 19 46 46 H 1.09002 * 110.72666 * 204.23420 * 22 21 20 47 47 H 1.08998 * 110.72369 * 80.94172 * 22 21 20 48 48 H 1.09001 * 110.30688 * 263.03605 * 23 22 21 49 49 H 1.08996 * 110.30747 * 140.87557 * 23 22 21 50 50 H 1.08994 * 109.91810 * 333.51090 * 24 20 19 51 51 H 1.08999 * 109.91451 * 94.60787 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0798 0.9742 2.3757 7 6 1.9930 -0.4016 3.7284 8 7 1.6446 0.2774 4.7994 9 14 2.9634 -1.9882 3.9030 10 1 4.4168 -1.6848 3.8783 11 1 2.6159 -2.6418 5.1904 12 1 2.6287 -2.8993 2.7791 13 6 2.0401 -0.7213 -1.2491 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6267 -3.6671 16 6 1.7025 0.1906 -4.8892 17 6 2.1961 -0.5013 -6.1614 18 6 1.7733 0.3163 -7.3835 19 6 2.2663 -0.3758 -8.6557 20 7 1.8598 0.4089 -9.8292 21 6 2.2835 1.8261 -9.6946 22 6 2.2642 2.3422 -11.1553 23 6 2.7800 1.1260 -11.9584 24 6 2.5158 -0.0934 -11.0559 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6053 -1.7197 1.2953 29 1 3.1262 -0.7994 1.2058 30 1 1.8918 -0.0455 5.6800 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2054 33 1 0.6530 0.1792 -2.4753 34 1 1.6922 -1.6247 -3.7298 35 1 3.2128 -0.7040 -3.6399 36 1 2.1359 1.1888 -4.8265 37 1 0.6156 0.2675 -4.9161 38 1 3.2831 -0.5785 -6.1347 39 1 1.7624 -1.4993 -6.2238 40 1 0.6864 0.3939 -7.4104 41 1 2.2072 1.3142 -7.3209 42 1 3.3532 -0.4538 -8.6290 43 1 1.8319 -1.3736 -8.7181 44 1 1.5756 2.3827 -9.0805 45 1 3.2886 1.8891 -9.2776 46 1 2.9342 3.1940 -11.2724 47 1 1.2503 2.6029 -11.4589 48 1 3.8474 1.2274 -12.1545 49 1 2.2301 1.0301 -12.8946 50 1 3.4582 -0.5780 -10.8012 51 1 1.8604 -0.8004 -11.5645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -35.030413 kcal Electronic energy + Delta-G solvation = -21460.920033 eV Core-core repulsion = 18393.399980 eV Total energy + Delta-G solvation = -3067.520053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.43213 -37.44571 -35.87933 -34.06494 -32.46928 -31.57107 -29.48497 -28.83966 -27.35420 -25.75415 -24.22790 -22.52489 -21.67994 -21.48091 -21.02970 -20.55714 -18.94262 -16.83235 -16.55981 -16.29626 -16.11488 -15.48967 -14.73332 -14.52898 -14.40093 -13.97331 -13.90284 -13.52051 -13.25533 -13.08937 -12.75073 -12.60911 -12.25037 -12.16167 -11.93136 -11.84390 -11.72583 -11.65293 -11.55603 -11.23089 -11.06681 -11.02415 -10.97186 -10.85742 -10.72811 -10.60492 -10.35745 -9.88010 -9.64138 -9.40231 -9.03247 -8.82755 -8.49480 -8.17385 -5.99886 -3.96649 3.32970 3.40215 3.44014 3.55500 4.15613 4.26015 4.35403 4.48780 4.52003 4.66642 4.77728 4.83769 4.87826 5.00408 5.06923 5.20719 5.25087 5.31983 5.33227 5.33762 5.39121 5.40955 5.51448 5.54783 5.61632 5.62903 5.69070 5.71217 5.74061 5.76193 5.85363 5.92700 5.98692 6.16099 6.16406 6.22654 6.40736 6.47637 6.49017 6.64734 6.80701 6.99945 7.08543 7.29029 7.33336 7.52323 7.65013 7.85235 8.59876 9.05904 9.63108 11.13556 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.049492 B = 0.001818 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.610157 B =15397.063686 C =15635.479305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.692 5.692 15 C 0.057 3.943 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.520 5.520 21 C 0.033 3.967 22 C -0.126 4.126 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.339 0.661 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -0.473 -33.027 33.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.323 5.323 15 C -0.072 4.072 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.635 -0.118 -32.827 32.868 hybrid contribution 0.876 -1.660 0.334 1.906 sum 2.511 -1.777 -32.494 32.639 Atomic orbital electron populations 1.21746 0.96220 1.00482 1.00824 1.21035 0.95263 1.00186 0.93045 0.91054 1.19604 0.95580 0.96033 0.93443 1.21146 1.35300 1.09518 0.89111 0.90813 1.25031 0.95717 0.96903 0.95961 1.69917 1.47250 1.39302 0.97988 0.86801 0.80659 0.84526 0.77402 1.20383 1.21498 1.19145 1.22154 1.00204 0.94444 0.89885 1.60540 1.19687 1.50581 1.01520 1.21954 1.00435 0.95033 0.89793 1.21548 1.00957 0.99925 0.92939 1.21508 1.01002 0.99183 0.93807 1.21647 1.01977 0.99191 0.92789 1.22353 0.97938 0.97861 0.90038 1.64817 1.54879 1.02341 1.02365 1.23259 0.99310 0.89751 0.97188 1.22500 1.01913 0.97358 0.94597 1.22401 1.01117 0.94573 0.98919 1.22877 0.97551 0.97480 0.91516 0.94113 0.91325 0.94686 0.96823 0.97139 0.92855 0.95936 0.91614 0.84271 0.95826 0.91394 0.91119 0.92142 0.92056 0.92011 0.91068 0.91788 0.94738 0.90645 0.89760 0.93671 0.91049 0.90687 0.91575 0.90993 0.93835 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.54 2.55 -90.62 -0.23 -1.77 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.66 8.96 -34.44 -0.31 -14.97 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.17 13.96 55.43 0.77 -27.39 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.06 1.04 5.14 -3.82 -0.02 1.03 16 14 N -0.69 -10.05 6.50 -113.78 -0.74 -10.79 16 15 C 0.06 0.68 5.69 -3.83 -0.02 0.66 16 16 C -0.12 -1.13 5.47 -26.73 -0.15 -1.28 16 17 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 18 C -0.12 -0.91 4.87 -26.74 -0.13 -1.04 16 19 C 0.05 0.35 5.03 -3.83 -0.02 0.33 16 20 N -0.52 -4.15 5.40 -230.47 -1.24 -5.39 16 21 C 0.03 0.23 5.10 -1.90 -0.01 0.22 16 22 C -0.13 -0.74 7.06 -24.87 -0.18 -0.91 16 23 C -0.13 -0.74 6.93 -25.37 -0.18 -0.91 16 24 C 0.03 0.23 6.69 -2.76 -0.02 0.21 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 27 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 28 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.34 4.67 6.98 -39.29 -0.27 4.40 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.50 6.80 -51.93 -0.35 0.15 16 42 H 0.03 0.26 7.81 -51.93 -0.41 -0.14 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 45 H 0.04 0.32 8.00 -51.93 -0.42 -0.09 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.28 7.57 -51.93 -0.39 -0.11 16 51 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -30.37 387.79 -11.75 -42.12 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -10.45 Total: -1.53 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.26 Total: -20.23 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -1.21 Total: -43.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.37 -11.75 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.086 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds