Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.52992 * 109.47324 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47324 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.47260 * 179.97438 * 19 18 17 21 21 C 1.48534 * 111.00030 * 52.59919 * 20 19 18 22 22 C 1.54937 * 103.22477 * 159.71858 * 21 20 19 23 23 C 1.54596 * 102.92379 * 322.58794 * 22 21 20 24 24 C 1.47900 * 110.99954 * 169.99652 * 20 19 18 25 25 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 26 26 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 27 27 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 29 29 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 32 32 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 33 33 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 34 34 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 35 35 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 36 36 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 37 37 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 38 38 H 1.09007 * 109.46912 * 299.99998 * 17 16 15 39 39 H 1.08994 * 109.47116 * 59.99929 * 17 16 15 40 40 H 1.08999 * 109.46928 * 299.99985 * 18 17 16 41 41 H 1.08999 * 109.47826 * 59.99595 * 18 17 16 42 42 H 1.09007 * 109.46912 * 299.99624 * 19 18 17 43 43 H 1.08994 * 109.47116 * 59.99555 * 19 18 17 44 44 H 1.08992 * 110.66683 * 278.15830 * 21 20 19 45 45 H 1.09004 * 110.66672 * 41.29185 * 21 20 19 46 46 H 1.08997 * 110.72370 * 204.22980 * 22 21 20 47 47 H 1.09006 * 110.72119 * 80.94744 * 22 21 20 48 48 H 1.08994 * 110.31212 * 263.03877 * 23 22 21 49 49 H 1.09001 * 110.30796 * 140.86867 * 23 22 21 50 50 H 1.08998 * 109.91834 * 333.51339 * 24 20 19 51 51 H 1.09007 * 109.91470 * 94.60131 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 6 2.1981 -0.4999 6.1613 18 6 1.7753 0.3178 7.3833 19 6 2.2694 -0.3737 8.6556 20 7 1.8639 0.4118 9.8289 21 6 0.4051 0.6899 9.8051 22 6 0.0835 1.0230 11.2836 23 6 0.9896 0.0431 12.0638 24 6 2.1111 -0.3378 11.0797 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0275 0.0005 28 1 1.6053 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2056 30 1 2.9362 -2.0177 -3.0611 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 1.9883 0.9872 2.3967 34 1 1.6921 -1.6248 3.7300 35 1 3.2127 -0.7039 3.6399 36 1 2.1375 1.1892 4.8260 37 1 0.6166 0.2689 4.9165 38 1 1.7644 -1.4979 6.2246 39 1 3.2850 -0.5771 6.1337 40 1 2.2087 1.3160 7.3202 41 1 0.6884 0.3948 7.4108 42 1 1.8356 -1.3718 8.7185 43 1 3.3562 -0.4510 8.6284 44 1 0.1865 1.5425 9.1622 45 1 -0.1492 -0.1906 9.4799 46 1 -0.9674 0.8336 11.5020 47 1 0.3459 2.0561 11.5121 48 1 0.4257 -0.8427 12.3560 49 1 1.4081 0.5331 12.9429 50 1 2.0836 -1.4094 10.8821 51 1 3.0814 -0.0614 11.4926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602676149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -42.855886 kcal Electronic energy + Delta-G solvation = -21443.559251 eV Core-core repulsion = 18375.699860 eV Total energy + Delta-G solvation = -3067.859391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43224 -37.37999 -35.86380 -34.17821 -32.59605 -31.49429 -29.46026 -28.72846 -26.42678 -25.66106 -24.08448 -22.63662 -21.98685 -21.49825 -21.04799 -20.56270 -19.23708 -16.67197 -16.57161 -16.29241 -16.09424 -15.37347 -14.55426 -14.50863 -14.37369 -14.12290 -13.69003 -13.53138 -13.29578 -13.21377 -12.71355 -12.62609 -12.20605 -11.88918 -11.85771 -11.74836 -11.63541 -11.55131 -11.40878 -11.19656 -11.07001 -11.02407 -10.96266 -10.82727 -10.70562 -10.61463 -10.14909 -10.05837 -9.78702 -9.40799 -8.82775 -8.44078 -8.27218 -8.14900 -6.30031 -3.97886 3.46881 3.49043 3.55467 3.67548 4.15564 4.25828 4.35283 4.51814 4.59659 4.66793 4.78081 4.83620 4.87937 5.00620 5.06735 5.20681 5.25360 5.32098 5.33286 5.39199 5.40970 5.46319 5.51663 5.54616 5.60946 5.62983 5.69470 5.72516 5.76197 5.77762 5.88108 5.93665 6.08028 6.16501 6.20406 6.35130 6.47532 6.47864 6.62180 6.64680 6.92095 7.09313 7.14653 7.32205 7.44542 7.59271 7.66550 8.29899 8.53036 8.95175 9.73608 11.10365 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.059038 B = 0.001751 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.157823 B =15988.505749 C =16263.455358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.689 5.689 15 C 0.058 3.942 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.520 5.520 21 C 0.033 3.967 22 C -0.126 4.126 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.007 0.993 29 H 0.003 0.997 30 H 0.267 0.733 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.337 0.663 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 2.867 31.139 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.319 5.319 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.973 3.058 29.493 29.800 hybrid contribution 0.518 -0.720 1.638 1.863 sum -2.455 2.338 31.132 31.316 Atomic orbital electron populations 1.21572 0.95506 1.00520 1.00300 1.21065 0.96162 0.98834 0.93447 0.92712 1.19255 0.95117 0.95629 0.92390 1.22041 1.38655 1.10230 0.92281 0.93203 1.25834 0.94729 0.97178 1.01391 1.70780 1.35976 1.15052 1.33464 0.83560 0.76049 0.75121 0.75628 1.20866 1.21481 1.21532 1.22152 0.96997 0.97717 0.89703 1.60528 1.64052 1.05746 1.01593 1.21953 0.96987 0.98364 0.89899 1.21544 1.01829 0.98921 0.93005 1.21509 1.01050 0.99149 0.93813 1.21645 1.01135 0.99941 0.92855 1.22356 1.01039 0.94674 0.90129 1.64820 1.15852 1.42002 1.01717 1.23259 0.88382 1.00679 0.97192 1.22499 0.99304 1.00067 0.94492 1.22399 0.96647 0.99445 0.98508 1.22882 0.99586 0.96321 0.90645 0.93782 0.92650 0.94299 0.97500 0.97889 0.92221 0.91706 0.95969 0.84610 0.91437 0.95799 0.92140 0.91187 0.92066 0.91985 0.91072 0.91822 0.94729 0.90625 0.89779 0.93681 0.91058 0.90690 0.91573 0.90988 0.93828 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.61 2.48 -90.62 -0.22 -1.83 16 3 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -17.12 8.41 -34.44 -0.29 -17.41 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.60 13.65 55.43 0.76 -27.85 16 9 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.13 5.07 -3.83 -0.02 1.11 16 14 N -0.69 -10.28 5.96 -113.78 -0.68 -10.96 16 15 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 16 C -0.12 -1.16 5.47 -26.73 -0.15 -1.30 16 17 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 18 C -0.12 -0.93 4.87 -26.73 -0.13 -1.06 16 19 C 0.05 0.36 5.03 -3.82 -0.02 0.34 16 20 N -0.52 -4.21 5.40 -230.45 -1.24 -5.45 16 21 C 0.03 0.23 5.10 -1.90 -0.01 0.22 16 22 C -0.13 -0.74 7.06 -24.87 -0.18 -0.92 16 23 C -0.13 -0.74 6.93 -25.38 -0.18 -0.92 16 24 C 0.03 0.23 6.69 -2.76 -0.02 0.21 16 25 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 26 H 0.05 1.20 6.95 -51.93 -0.36 0.83 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 29 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 30 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 4.78 8.73 -39.29 -0.34 4.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.51 6.79 -51.93 -0.35 0.15 16 42 H 0.03 0.27 7.81 -51.92 -0.41 -0.14 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 45 H 0.04 0.32 8.00 -51.93 -0.42 -0.09 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.29 7.57 -51.93 -0.39 -0.10 16 51 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -30.80 392.34 -12.13 -42.92 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -10.55 Total: -1.63 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.24 Total: -23.63 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -1.16 Total: -44.26 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.80 -12.13 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602676149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.069 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds