Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47252 * 2 1 4 4 C 1.52998 * 109.47301 * 120.00294 * 2 1 3 5 5 C 1.50699 * 109.47137 * 295.00185 * 4 2 1 6 6 H 1.07991 * 119.99889 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99723 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00252 * 359.72210 * 7 5 4 9 9 Si 1.86796 * 119.99723 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47249 * 179.72142 * 9 7 5 11 11 H 1.48493 * 109.47459 * 299.72581 * 9 7 5 12 12 H 1.48508 * 109.47200 * 59.72263 * 9 7 5 13 13 C 1.53001 * 109.46701 * 240.00525 * 2 1 3 14 14 N 1.46893 * 109.47543 * 65.00161 * 13 2 1 15 15 C 1.46902 * 111.00078 * 66.04291 * 14 13 2 16 16 C 1.46898 * 111.00391 * 189.99623 * 14 13 2 17 17 C 1.52996 * 109.47234 * 293.66065 * 16 14 13 18 18 C 1.53009 * 109.46831 * 53.66121 * 16 14 13 19 19 C 1.53001 * 109.47628 * 173.65754 * 16 14 13 20 20 N 1.46899 * 109.47230 * 293.82630 * 19 16 14 21 21 C 1.48529 * 111.00431 * 59.75928 * 20 19 16 22 22 C 1.54935 * 103.22489 * 159.72492 * 21 20 19 23 23 C 1.54595 * 102.92369 * 322.58695 * 22 21 20 24 24 C 1.47905 * 110.99996 * 177.16390 * 20 19 16 25 25 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47168 * 299.99934 * 1 2 3 27 27 H 1.09004 * 109.47469 * 59.99657 * 1 2 3 28 28 H 1.09002 * 109.47209 * 174.99830 * 4 2 1 29 29 H 1.09002 * 109.46898 * 55.00296 * 4 2 1 30 30 H 0.97009 * 119.99593 * 0.27122 * 8 7 5 31 31 H 1.09006 * 109.46662 * 185.00036 * 13 2 1 32 32 H 1.08998 * 109.47153 * 304.99595 * 13 2 1 33 33 H 1.08990 * 109.47385 * 52.40461 * 15 14 13 34 34 H 1.09004 * 109.47204 * 172.40478 * 15 14 13 35 35 H 1.09003 * 109.47154 * 292.39977 * 15 14 13 36 36 H 1.09003 * 109.47106 * 55.03100 * 17 16 14 37 37 H 1.09004 * 109.47237 * 175.02380 * 17 16 14 38 38 H 1.08997 * 109.47353 * 295.03205 * 17 16 14 39 39 H 1.08996 * 109.46800 * 60.00508 * 18 16 14 40 40 H 1.09002 * 109.46729 * 180.02562 * 18 16 14 41 41 H 1.08997 * 109.47093 * 299.99777 * 18 16 14 42 42 H 1.09004 * 109.46391 * 53.81573 * 19 16 14 43 43 H 1.08992 * 109.47445 * 173.81511 * 19 16 14 44 44 H 1.08997 * 110.66801 * 278.15898 * 21 20 19 45 45 H 1.08994 * 110.66525 * 41.29040 * 21 20 19 46 46 H 1.09001 * 110.72679 * 204.23050 * 22 21 20 47 47 H 1.08996 * 110.72666 * 80.94400 * 22 21 20 48 48 H 1.09007 * 110.31123 * 263.04595 * 23 22 21 49 49 H 1.09001 * 110.39604 * 140.92134 * 23 22 21 50 50 H 1.08998 * 109.91347 * 333.50020 * 24 20 19 51 51 H 1.08999 * 109.91919 * 94.59889 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0807 0.9743 2.3757 7 6 1.9933 -0.4020 3.7282 8 7 2.6722 -1.5216 3.8513 9 14 1.4998 0.5630 5.2496 10 1 1.9894 -0.1403 6.4624 11 1 2.0972 1.9211 5.1898 12 1 0.0200 0.6754 5.3061 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9124 -0.7355 -3.6672 17 6 3.4209 -0.9249 -3.8382 18 6 1.2354 -2.1034 -3.5595 19 6 1.3525 0.0167 -4.8763 20 7 -0.1127 0.0693 -4.7847 21 6 -0.5440 0.7635 -3.5445 22 6 -2.0004 1.1858 -3.8629 23 6 -1.9284 1.5762 -5.3570 24 6 -0.6860 0.8487 -5.9034 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7199 1.2950 30 1 2.9288 -2.0225 3.0611 31 1 3.1262 -0.7994 -1.2057 32 1 1.6053 -1.7197 -1.2953 33 1 3.4075 1.1882 -2.3740 34 1 2.1352 1.8204 -3.4462 35 1 1.9659 1.9687 -1.6805 36 1 3.8340 -1.3816 -2.9388 37 1 3.6110 -1.5722 -4.6945 38 1 3.8924 0.0438 -4.0032 39 1 0.1608 -1.9684 -3.4377 40 1 1.4295 -2.6772 -4.4657 41 1 1.6343 -2.6393 -2.6982 42 1 1.7523 1.0307 -4.8902 43 1 1.6411 -0.5003 -5.7913 44 1 -0.5181 0.0828 -2.6937 45 1 0.0781 1.6387 -3.3574 46 1 -2.2959 2.0407 -3.2547 47 1 -2.6852 0.3508 -3.7150 48 1 -1.8113 2.6550 -5.4610 49 1 -2.8238 1.2413 -5.8807 50 1 0.0429 1.5760 -6.2611 51 1 -0.9711 0.1791 -6.7148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = 1.912036 kcal Electronic energy + Delta-G solvation = -24605.417524 eV Core-core repulsion = 21539.499416 eV Total energy + Delta-G solvation = -3065.918108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.07321 -37.79525 -35.33554 -32.94355 -31.55758 -30.77400 -28.81648 -27.97381 -26.41543 -26.23243 -25.12066 -24.31822 -22.49219 -20.90629 -20.75721 -19.18367 -18.42435 -16.73707 -16.30496 -15.91211 -15.54303 -14.76234 -14.54717 -14.09561 -13.77983 -13.71119 -13.45562 -13.34901 -12.97645 -12.87128 -12.32745 -12.18224 -12.03929 -11.93396 -11.65520 -11.63484 -11.45036 -11.30432 -11.20131 -11.14217 -10.96266 -10.90244 -10.70512 -10.57174 -10.46573 -10.30252 -10.16158 -10.05004 -9.61167 -9.33924 -8.43211 -8.26600 -8.26073 -7.86943 -6.28850 -3.96536 3.46862 3.48853 3.67333 4.03458 4.11874 4.59963 4.63366 4.73795 4.89983 4.95260 5.07379 5.21280 5.26324 5.40068 5.44911 5.48362 5.50565 5.55854 5.65980 5.69386 5.71599 5.75285 5.80982 5.86175 5.91563 5.94736 5.96697 6.00053 6.04427 6.10329 6.17748 6.22045 6.29179 6.39043 6.47482 6.53267 6.60116 6.70268 6.94989 7.01713 7.13922 7.15518 7.18242 7.39442 7.41350 7.49048 7.66071 8.31519 8.54315 8.96555 9.74756 11.11536 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.004217 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.803932 B = 6637.950435 C = 7381.456902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.055 0.945 4 C 0.015 3.985 5 C -0.591 4.591 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.053 3.947 14 N -0.519 5.519 15 C 0.017 3.983 16 C 0.106 3.894 17 C -0.179 4.179 18 C -0.132 4.132 19 C 0.062 3.938 20 N -0.509 5.509 21 C 0.049 3.951 22 C -0.134 4.134 23 C -0.130 4.130 24 C 0.034 3.966 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.001 0.999 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 4.232 -20.338 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.023 4.023 5 C -0.630 4.630 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.074 4.074 14 N -0.243 5.243 15 C -0.131 4.131 16 C 0.016 3.984 17 C -0.238 4.238 18 C -0.189 4.189 19 C -0.067 4.067 20 N -0.233 5.233 21 C -0.078 4.078 22 C -0.172 4.172 23 C -0.168 4.168 24 C -0.094 4.094 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.130 0.870 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.099 3.786 -18.674 19.724 hybrid contribution 1.303 0.769 -1.825 2.371 sum -3.796 4.555 -20.499 21.339 Atomic orbital electron populations 1.21646 0.95654 1.00484 1.00331 1.21046 0.95974 0.98891 0.93170 0.92696 1.19239 0.94967 0.95589 0.92473 1.22023 1.38480 1.10190 0.92283 0.93307 1.25796 0.94791 0.97156 1.01328 1.70781 1.36375 1.14731 1.33445 0.83585 0.76064 0.75122 0.75750 1.20892 1.21598 1.21484 1.22482 0.97503 0.97885 0.89553 1.62579 1.56662 1.03492 1.01564 1.22515 0.96521 0.92377 1.01728 1.21066 0.92705 0.94513 0.90091 1.22452 0.97277 1.01719 1.02365 1.21824 1.02338 0.94014 1.00762 1.22318 0.88460 0.98505 0.97386 1.64772 1.08191 1.47932 1.02446 1.23533 0.92432 0.98171 0.93670 1.22630 0.98651 1.00956 0.94958 1.22367 0.97886 0.99533 0.97013 1.22842 0.95841 0.95559 0.95142 0.94334 0.92855 0.93444 0.98109 0.97605 0.92211 0.95490 0.90650 0.95636 0.92283 0.90949 0.91923 0.92386 0.92765 0.90534 0.93004 0.92792 0.94739 0.91076 0.87020 0.93620 0.91547 0.91224 0.92099 0.91571 0.94604 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.07 -1.45 2.25 -90.62 -0.20 -1.66 16 3 H 0.05 1.15 6.50 -51.93 -0.34 0.81 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -16.77 8.41 -34.44 -0.29 -17.06 16 6 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.41 13.65 55.43 0.76 -27.66 16 9 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.05 0.89 3.54 -3.83 -0.01 0.87 16 14 N -0.52 -7.16 1.10 -227.16 -0.25 -7.41 16 15 C 0.02 0.22 6.99 60.07 0.42 0.64 16 16 C 0.11 1.29 0.33 -131.60 -0.04 1.25 16 17 C -0.18 -2.07 7.74 37.16 0.29 -1.78 16 18 C -0.13 -1.65 7.83 37.16 0.29 -1.36 16 19 C 0.06 0.69 3.86 -3.82 -0.01 0.68 16 20 N -0.51 -5.91 4.35 -230.46 -1.00 -6.92 16 21 C 0.05 0.61 4.42 -1.90 -0.01 0.60 16 22 C -0.13 -1.46 7.06 -24.87 -0.18 -1.63 16 23 C -0.13 -1.23 6.93 -25.37 -0.18 -1.40 16 24 C 0.03 0.34 6.70 -2.75 -0.02 0.33 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.05 0.79 5.65 -51.93 -0.29 0.50 16 28 H 0.00 0.02 8.01 -51.93 -0.42 -0.40 16 29 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 30 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 31 H 0.03 0.48 6.77 -51.93 -0.35 0.13 16 32 H 0.08 1.29 5.65 -51.93 -0.29 1.00 16 33 H 0.03 0.35 6.96 -51.93 -0.36 -0.01 16 34 H 0.06 0.70 5.14 -51.93 -0.27 0.44 16 35 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 36 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.61 6.92 -51.93 -0.36 0.25 16 39 H 0.08 1.04 6.90 -51.93 -0.36 0.68 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.72 6.11 -51.93 -0.32 0.40 16 42 H 0.03 0.39 5.81 -51.93 -0.30 0.09 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.11 1.60 4.56 -51.93 -0.24 1.37 16 45 H 0.05 0.60 5.87 -51.93 -0.30 0.29 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.04 0.35 7.69 -51.93 -0.40 -0.05 16 51 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -29.40 358.85 -9.32 -38.72 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -9.33 Total: -0.65 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 0.18 Total: -22.03 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.50 Total: -41.98 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.40 -9.32 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.628 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds