Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47193 * 2 1 4 4 C 1.52996 * 109.47501 * 240.00035 * 2 1 3 5 5 C 1.50704 * 109.47149 * 64.99524 * 4 2 1 6 6 H 1.07999 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99882 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47142 * 90.00532 * 9 7 5 11 11 H 1.48503 * 109.47353 * 210.00622 * 9 7 5 12 12 H 1.48504 * 109.46875 * 330.00353 * 9 7 5 13 13 C 1.53004 * 109.47060 * 119.99730 * 2 1 3 14 14 N 1.46903 * 109.46953 * 294.99961 * 13 2 1 15 15 C 1.46895 * 111.00190 * 293.95158 * 14 13 2 16 16 C 1.46901 * 110.99665 * 169.99971 * 14 13 2 17 17 C 1.52998 * 109.47406 * 59.99957 * 16 14 13 18 18 C 1.53007 * 109.47150 * 299.99872 * 16 14 13 19 19 C 1.53000 * 109.46877 * 180.02562 * 16 14 13 20 20 N 1.46895 * 109.47324 * 44.55840 * 19 16 14 21 21 C 1.48530 * 111.00483 * 59.08480 * 20 19 16 22 22 C 1.54942 * 103.22710 * 159.72082 * 21 20 19 23 23 C 1.54594 * 102.92361 * 322.58980 * 22 21 20 24 24 C 1.47904 * 111.00131 * 176.48760 * 20 19 16 25 25 H 1.08999 * 109.47741 * 300.00516 * 1 2 3 26 26 H 1.09005 * 109.46691 * 59.99998 * 1 2 3 27 27 H 1.08993 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47182 * 185.00233 * 4 2 1 29 29 H 1.09007 * 109.47035 * 305.00208 * 4 2 1 30 30 H 0.97003 * 119.99881 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.46977 * 175.00137 * 13 2 1 32 32 H 1.08999 * 109.46508 * 54.99797 * 13 2 1 33 33 H 1.08998 * 109.47360 * 296.04955 * 15 14 13 34 34 H 1.09001 * 109.46856 * 56.04957 * 15 14 13 35 35 H 1.09003 * 109.47069 * 176.04484 * 15 14 13 36 36 H 1.08997 * 109.47194 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47074 * 300.00317 * 17 16 14 38 38 H 1.09003 * 109.46390 * 59.99602 * 17 16 14 39 39 H 1.09005 * 109.46853 * 318.60922 * 18 16 14 40 40 H 1.09002 * 109.46778 * 78.60448 * 18 16 14 41 41 H 1.08995 * 109.47051 * 198.60600 * 18 16 14 42 42 H 1.08994 * 109.47033 * 284.55471 * 19 16 14 43 43 H 1.09005 * 109.46854 * 164.55403 * 19 16 14 44 44 H 1.08993 * 110.67477 * 278.15792 * 21 20 19 45 45 H 1.09005 * 110.66337 * 41.29209 * 21 20 19 46 46 H 1.08999 * 110.72488 * 204.22917 * 22 21 20 47 47 H 1.08995 * 110.72426 * 80.94993 * 22 21 20 48 48 H 1.09005 * 110.31032 * 263.04531 * 23 22 21 49 49 H 1.08996 * 110.39440 * 140.91178 * 23 22 21 50 50 H 1.09003 * 109.91590 * 333.50588 * 24 20 19 51 51 H 1.08998 * 109.91980 * 94.60026 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 2.6766 -1.5187 -3.8511 9 14 1.4997 0.5633 -5.2496 10 1 2.5652 1.5428 -5.5817 11 1 1.3131 -0.3705 -6.3892 12 1 0.2284 1.2845 -4.9873 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4457 15 6 2.3340 1.3375 2.4894 16 6 1.9124 -0.7356 3.6672 17 6 3.4048 -1.0607 3.7558 18 6 1.1083 -2.0368 3.6288 19 6 1.4952 0.0853 4.8891 20 7 0.1876 0.7060 4.6389 21 6 -0.8457 -0.3235 4.3590 22 6 -2.1742 0.4202 4.6466 23 6 -1.8206 1.3001 5.8675 24 6 -0.2874 1.4404 5.8316 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 2.9239 -1.8417 -4.7317 31 1 3.1262 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 3.4088 1.1806 2.5807 34 1 2.1239 1.8892 1.5732 35 1 1.9759 1.9073 3.3469 36 1 3.5984 -1.6348 4.6619 37 1 3.7015 -1.6456 2.8852 38 1 3.9775 -0.1337 3.7831 39 1 0.1096 -1.8354 3.2411 40 1 1.6111 -2.7556 2.9818 41 1 1.0314 -2.4462 4.6360 42 1 2.2367 0.8622 5.0752 43 1 1.4269 -0.5677 5.7593 44 1 -0.8003 -0.6411 3.3173 45 1 -0.7298 -1.1765 5.0277 46 1 -2.9655 -0.2865 4.8966 47 1 -2.4621 1.0382 3.7962 48 1 -2.1341 0.8110 6.7898 49 1 -2.2922 2.2788 5.7797 50 1 0.1464 1.0060 6.7323 51 1 -0.0095 2.4916 5.7556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602698824.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = 7.221693 kcal Electronic energy + Delta-G solvation = -24390.448785 eV Core-core repulsion = 21324.760921 eV Total energy + Delta-G solvation = -3065.687864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95940 -37.83132 -35.10159 -32.69975 -31.50119 -30.88149 -29.11814 -27.64051 -26.66679 -26.25690 -25.15499 -24.20698 -22.30859 -20.96153 -20.79615 -18.91699 -18.38434 -16.56320 -16.17409 -15.94689 -15.25073 -14.51823 -14.45954 -14.35527 -14.04177 -13.64752 -13.48905 -13.33925 -12.71050 -12.52754 -12.34299 -12.14866 -12.10876 -12.01698 -11.82348 -11.55005 -11.37694 -11.30583 -11.13199 -11.02776 -10.89706 -10.80045 -10.60636 -10.56877 -10.37438 -10.27904 -10.17564 -10.08278 -9.45011 -9.01015 -8.85468 -8.26306 -8.25157 -7.67345 -5.91594 -3.91975 3.36916 3.43058 3.46883 3.93090 4.40700 4.54754 4.57933 4.68226 4.88222 4.91036 4.97733 5.25018 5.27477 5.44253 5.45338 5.47277 5.56884 5.61699 5.62631 5.65968 5.72061 5.78172 5.81911 5.92368 5.94124 5.95063 5.99490 6.02209 6.08459 6.16889 6.19987 6.26499 6.34726 6.48412 6.50214 6.56877 6.71822 6.86322 7.00141 7.07955 7.18842 7.29976 7.34904 7.66714 7.68711 7.78691 7.95791 8.09934 8.54936 9.14786 9.71051 11.20016 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003979 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.110524 B = 7035.704421 C = 7608.960597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.055 3.945 14 N -0.503 5.503 15 C 0.026 3.974 16 C 0.108 3.892 17 C -0.181 4.181 18 C -0.157 4.157 19 C 0.062 3.938 20 N -0.489 5.489 21 C 0.036 3.964 22 C -0.127 4.127 23 C -0.129 4.129 24 C 0.032 3.968 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.010 0.990 29 H 0.014 0.986 30 H 0.258 0.742 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.014 0.986 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.031 0.969 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.035 0.965 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 2.394 21.483 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.072 4.072 14 N -0.226 5.226 15 C -0.122 4.122 16 C 0.018 3.982 17 C -0.240 4.240 18 C -0.214 4.214 19 C -0.066 4.066 20 N -0.213 5.213 21 C -0.091 4.091 22 C -0.165 4.165 23 C -0.168 4.168 24 C -0.096 4.096 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.122 0.878 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.247 2.720 20.892 21.712 hybrid contribution 0.826 -0.292 -0.134 0.886 sum -4.420 2.428 20.758 21.362 Atomic orbital electron populations 1.21559 0.95866 1.00161 1.00192 1.21189 0.95870 0.99006 0.93687 0.92694 1.19119 0.95732 0.95491 0.90659 1.21257 1.34275 1.08172 0.91014 0.92616 1.25014 0.95435 0.95085 0.99032 1.69972 1.39341 1.21287 1.23238 0.86654 0.78929 0.79826 0.82959 1.20827 1.21372 1.19881 1.22385 0.97311 0.97474 0.90008 1.62221 1.57164 1.03022 1.00229 1.22396 0.94935 0.91983 1.02897 1.21013 0.92914 0.93323 0.90989 1.22482 0.97475 1.01851 1.02192 1.22423 1.02149 0.95851 1.00968 1.22361 0.92184 0.96805 0.95286 1.64731 1.01242 1.23138 1.32152 1.23620 0.90032 0.92955 1.02465 1.22537 0.97367 0.98569 0.98062 1.22363 0.95478 1.00522 0.98403 1.22893 0.94814 0.99821 0.92076 0.93514 0.93165 0.94582 0.97184 0.96782 0.93209 0.95697 0.91471 0.96800 0.91239 0.91183 0.92774 0.91732 0.92403 0.89816 0.92664 0.93192 0.91149 0.95041 0.87775 0.94529 0.91640 0.90598 0.92141 0.91350 0.94653 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.64 2.26 -90.62 -0.20 -1.84 16 3 H 0.05 1.18 6.26 -51.93 -0.33 0.86 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 0.97 3.46 -3.82 -0.01 0.96 16 14 N -0.50 -7.35 3.24 -227.16 -0.74 -8.08 16 15 C 0.03 0.38 8.56 60.06 0.51 0.89 16 16 C 0.11 1.33 0.30 -131.60 -0.04 1.29 16 17 C -0.18 -2.17 7.65 37.16 0.28 -1.88 16 18 C -0.16 -1.86 6.34 37.16 0.24 -1.62 16 19 C 0.06 0.69 3.29 -3.83 -0.01 0.68 16 20 N -0.49 -5.58 4.24 -230.45 -0.98 -6.56 16 21 C 0.04 0.40 4.42 -1.90 -0.01 0.39 16 22 C -0.13 -1.24 7.06 -24.87 -0.18 -1.42 16 23 C -0.13 -1.14 6.93 -25.37 -0.18 -1.31 16 24 C 0.03 0.31 6.70 -2.75 -0.02 0.29 16 25 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 26 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.02 0.46 6.86 -51.93 -0.36 0.10 16 32 H 0.07 1.19 6.26 -51.93 -0.33 0.86 16 33 H 0.01 0.19 6.40 -51.93 -0.33 -0.14 16 34 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 35 H 0.07 0.95 6.19 -51.93 -0.32 0.62 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 38 H 0.06 0.69 6.49 -51.93 -0.34 0.36 16 39 H 0.08 1.04 4.70 -51.93 -0.24 0.79 16 40 H 0.05 0.69 7.10 -51.93 -0.37 0.32 16 41 H 0.05 0.52 7.52 -51.93 -0.39 0.13 16 42 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 43 H 0.03 0.33 7.64 -51.93 -0.40 -0.07 16 44 H 0.10 1.34 5.74 -51.93 -0.30 1.04 16 45 H 0.04 0.39 7.04 -51.93 -0.37 0.02 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.04 0.32 7.68 -51.93 -0.40 -0.08 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -29.42 365.06 -9.86 -39.28 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -9.57 Total: -2.20 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 0.20 Total: -18.30 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.98 Total: -41.28 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.42 -9.86 -39.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602698824.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.502 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds