Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47545 * 2 1 4 4 C 1.53000 * 109.47272 * 59.99231 * 3 2 1 5 5 C 1.53008 * 109.46494 * 299.99759 * 3 2 1 6 6 N 1.46891 * 109.47323 * 179.97438 * 3 2 1 7 7 C 1.46956 * 111.00165 * 179.97438 * 6 3 2 8 8 C 1.53047 * 109.36685 * 183.18653 * 7 6 3 9 9 N 1.46954 * 109.36867 * 301.60016 * 8 7 6 10 10 C 1.46894 * 111.00675 * 183.18765 * 9 8 7 11 11 C 1.52998 * 109.47001 * 75.77242 * 10 9 8 12 12 H 1.08993 * 109.47354 * 305.24069 * 11 10 9 13 13 C 1.52997 * 109.46787 * 65.24689 * 11 10 9 14 14 C 1.53005 * 109.47202 * 185.24178 * 11 10 9 15 15 C 1.50697 * 109.47385 * 175.00316 * 14 11 10 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 11 17 17 C 1.37871 * 119.99985 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00318 * 359.72171 * 17 15 14 19 19 Si 1.86811 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47018 * 179.72094 * 19 17 15 21 21 H 1.48490 * 109.47131 * 299.72387 * 19 17 15 22 22 H 1.48502 * 109.46771 * 59.72388 * 19 17 15 23 23 C 1.46964 * 110.87781 * 59.31867 * 9 8 7 24 24 C 1.46954 * 111.00303 * 303.79574 * 6 3 2 25 25 H 1.09001 * 109.46631 * 60.00522 * 1 2 3 26 26 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47028 * 300.00519 * 1 2 3 28 28 H 1.08993 * 109.47246 * 239.99054 * 2 1 3 29 29 H 1.09002 * 109.46661 * 120.00029 * 2 1 3 30 30 H 1.08994 * 109.47011 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47009 * 300.00693 * 4 3 2 32 32 H 1.09002 * 109.46625 * 60.00159 * 4 3 2 33 33 H 1.08997 * 109.46674 * 299.99529 * 5 3 2 34 34 H 1.08990 * 109.47039 * 60.00237 * 5 3 2 35 35 H 1.09003 * 109.46813 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.48766 * 63.21931 * 7 6 3 37 37 H 1.08998 * 109.49111 * 303.15841 * 7 6 3 38 38 H 1.09003 * 109.49100 * 181.63467 * 8 7 6 39 39 H 1.09000 * 109.48794 * 61.56662 * 8 7 6 40 40 H 1.09013 * 109.46935 * 315.77724 * 10 9 8 41 41 H 1.09001 * 109.47496 * 195.77856 * 10 9 8 42 42 H 1.09002 * 109.47521 * 65.00976 * 13 11 10 43 43 H 1.09002 * 109.46932 * 185.00654 * 13 11 10 44 44 H 1.09004 * 109.47019 * 305.00159 * 13 11 10 45 45 H 1.08997 * 109.46944 * 55.00048 * 14 11 10 46 46 H 1.09003 * 109.46867 * 295.00390 * 14 11 10 47 47 H 0.97000 * 119.99778 * 0.28166 * 18 17 15 48 48 H 1.09001 * 109.48977 * 60.65087 * 23 9 8 49 49 H 1.08996 * 109.48650 * 180.71600 * 23 9 8 50 50 H 1.08997 * 109.49370 * 296.78284 * 24 6 3 51 51 H 1.09005 * 109.48940 * 56.84244 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1636 -1.2494 6 7 3.5090 1.4424 0.0006 7 6 4.0358 2.8143 0.0000 8 6 5.5636 2.7713 -0.0796 9 7 6.0898 2.0088 1.0611 10 6 7.5587 2.0087 1.0619 11 6 8.0685 3.3681 1.5445 12 1 7.6310 4.1579 0.9340 13 6 7.6683 3.5728 3.0070 14 6 9.5929 3.4140 1.4218 15 6 10.0845 4.7927 1.7803 16 1 9.3801 5.5594 2.0675 17 6 11.4334 5.0753 1.7418 18 7 12.2916 4.1402 1.3973 19 14 12.0427 6.7846 2.1856 20 1 13.5227 6.8273 2.0724 21 1 11.4464 7.7789 1.2579 22 1 11.6433 7.1060 3.5793 23 6 5.5630 0.6368 1.0617 24 6 4.0352 0.6794 1.1410 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5139 0.8900 30 1 1.8931 3.1915 1.2489 31 1 0.4400 2.1638 1.2490 32 1 1.8933 1.6500 2.1392 33 1 1.8936 1.6497 -2.1392 34 1 0.4402 2.1637 -1.2494 35 1 1.8931 3.1914 -1.2492 36 1 3.7335 3.3203 0.9169 37 1 3.6418 3.3548 -0.8607 38 1 5.9580 3.7871 -0.0509 39 1 5.8659 2.2896 -1.0094 40 1 7.9225 1.8222 0.0513 41 1 7.9217 1.2267 1.7288 42 1 8.1770 2.8367 3.6294 43 1 7.9530 4.5760 3.3245 44 1 6.5898 3.4519 3.1089 45 1 9.8821 3.1802 0.3972 46 1 10.0342 2.6833 2.0996 47 1 11.9752 3.2528 1.1665 48 1 5.8653 0.1308 0.1448 49 1 5.9570 0.0965 1.9224 50 1 3.7330 1.1607 2.0712 51 1 3.6409 -0.3364 1.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = -13.605955 kcal Electronic energy + Delta-G solvation = -23690.103552 eV Core-core repulsion = 20623.512533 eV Total energy + Delta-G solvation = -3066.591019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14920 -37.69082 -35.20276 -33.24454 -31.89171 -31.10603 -29.67956 -27.59817 -27.03528 -26.31123 -24.79681 -24.03587 -22.81291 -22.28231 -20.10588 -19.03993 -18.51235 -16.89699 -16.46735 -15.23894 -15.05202 -14.97800 -14.82095 -14.47940 -14.29999 -14.06763 -13.68838 -13.45662 -13.25637 -12.84289 -12.76804 -12.59471 -12.14756 -11.94886 -11.84989 -11.66214 -11.57649 -11.49659 -11.38899 -11.13176 -11.01229 -10.91096 -10.84189 -10.61931 -10.56308 -10.38120 -10.15585 -10.06081 -9.65715 -9.35949 -8.45390 -8.34336 -8.26079 -7.99314 -6.28786 -3.96470 3.47131 3.49279 3.67762 3.71273 4.13071 4.46921 4.60236 4.63887 4.84491 4.92461 5.04825 5.12767 5.15748 5.24719 5.28212 5.32802 5.40610 5.44689 5.47805 5.48017 5.58988 5.64323 5.70081 5.70853 5.73368 5.77786 5.85552 5.86587 5.90122 5.95178 6.03582 6.08518 6.11672 6.17459 6.22459 6.33141 6.49129 6.66234 6.92327 6.99814 7.03641 7.11638 7.15484 7.36349 7.40476 7.48903 7.65704 8.31724 8.54482 8.96710 9.74913 11.11677 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003022 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.319137 B = 9264.526692 C = 9481.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.141 4.141 6 N -0.528 5.528 7 C 0.054 3.946 8 C 0.057 3.943 9 N -0.535 5.535 10 C 0.061 3.939 11 C -0.070 4.070 12 H 0.055 0.945 13 C -0.120 4.120 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.057 3.943 24 C 0.054 3.946 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.002 0.998 46 H 0.006 0.994 47 H 0.268 0.732 48 H 0.036 0.964 49 H 0.075 0.925 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.877 -7.767 -2.847 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C 0.017 3.983 4 C -0.241 4.241 5 C -0.199 4.199 6 N -0.253 5.253 7 C -0.073 4.073 8 C -0.071 4.071 9 N -0.260 5.260 10 C -0.067 4.067 11 C -0.089 4.089 12 H 0.074 0.926 13 C -0.177 4.177 14 C -0.024 4.024 15 C -0.630 4.630 16 H 0.067 0.933 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.072 4.072 24 C -0.074 4.074 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.497 -6.844 -2.699 23.670 hybrid contribution -1.307 -0.957 -0.133 1.625 sum -23.804 -7.801 -2.832 25.209 Atomic orbital electron populations 1.21898 0.95714 1.01551 1.02024 1.21606 0.95518 0.95403 1.02488 1.21042 0.87114 0.95424 0.94750 1.22533 1.01686 1.01147 0.98753 1.21942 1.00489 1.00224 0.97213 1.62390 1.06148 1.14121 1.42615 1.22240 0.94724 0.89399 1.00971 1.22167 0.93636 0.99361 0.91954 1.62173 1.08842 1.12665 1.42271 1.22308 0.85109 0.99990 0.99254 1.21021 0.97849 0.93650 0.96388 0.92624 1.21548 0.99040 1.01126 0.96011 1.19265 0.89923 0.97578 0.95617 1.22027 0.94515 0.96838 1.49629 0.93280 1.25815 0.93519 1.04991 0.94799 1.70778 1.37117 1.04359 1.43092 0.83577 0.76132 0.74471 0.76286 1.20871 1.21541 1.21502 1.22143 0.93999 0.90426 1.00615 1.22225 0.94614 0.98248 0.92280 0.92365 0.92828 0.92549 0.91260 0.91863 0.92267 0.91970 0.92395 0.91910 0.92091 0.92505 0.93706 0.90394 0.89951 0.94494 0.95220 0.91638 0.94395 0.92984 0.93761 0.97947 0.97603 0.92204 0.94550 0.90678 0.93837 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.21 37.16 0.34 -0.68 16 2 C -0.11 -0.91 4.64 -26.73 -0.12 -1.04 16 3 C 0.11 0.96 0.48 -131.60 -0.06 0.90 16 4 C -0.18 -1.63 7.42 37.16 0.28 -1.35 16 5 C -0.14 -1.18 7.89 37.16 0.29 -0.89 16 6 N -0.53 -5.88 4.53 -218.83 -0.99 -6.87 16 7 C 0.05 0.66 4.82 -3.77 -0.02 0.64 16 8 C 0.06 0.82 5.43 -3.77 -0.02 0.80 16 9 N -0.53 -8.19 4.02 -234.47 -0.94 -9.13 16 10 C 0.06 1.08 4.39 -3.83 -0.02 1.07 16 11 C -0.07 -1.48 2.39 -90.62 -0.22 -1.69 16 12 H 0.06 1.21 6.73 -51.93 -0.35 0.86 16 13 C -0.12 -2.42 8.87 37.16 0.33 -2.09 16 14 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 15 C -0.59 -17.02 8.47 -34.44 -0.29 -17.31 16 16 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.92 -28.63 13.65 55.43 0.76 -27.88 16 19 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.06 0.74 5.56 -3.77 -0.02 0.72 16 24 C 0.05 0.61 4.83 -3.77 -0.02 0.59 16 25 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.52 6.28 -51.93 -0.33 0.20 16 30 H 0.06 0.57 6.48 -51.93 -0.34 0.24 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 35 H 0.06 0.49 6.34 -51.93 -0.33 0.16 16 36 H 0.04 0.57 6.48 -51.93 -0.34 0.23 16 37 H 0.08 0.86 6.14 -51.93 -0.32 0.54 16 38 H 0.08 1.27 6.71 -51.93 -0.35 0.92 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.03 0.55 8.00 -51.92 -0.42 0.13 16 41 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 1.12 7.10 -51.93 -0.37 0.75 16 44 H 0.04 0.81 7.63 -51.93 -0.40 0.41 16 45 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 46 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 47 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 50 H 0.04 0.52 6.56 -51.93 -0.34 0.18 16 51 H 0.08 0.77 6.06 -51.93 -0.31 0.45 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -30.36 364.83 -10.02 -40.38 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.51 Total: -2.90 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 0.25 Total: -19.82 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.18 Total: -43.88 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.36 -10.02 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds