Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47545 * 2 1 4 4 C 1.53000 * 109.47272 * 59.99231 * 3 2 1 5 5 C 1.53008 * 109.46494 * 299.99759 * 3 2 1 6 6 N 1.46891 * 109.47323 * 179.97438 * 3 2 1 7 7 C 1.46956 * 111.00165 * 179.97438 * 6 3 2 8 8 C 1.53047 * 109.36685 * 183.18653 * 7 6 3 9 9 N 1.46954 * 109.36867 * 301.60016 * 8 7 6 10 10 C 1.46894 * 111.00675 * 183.18765 * 9 8 7 11 11 C 1.52998 * 109.47001 * 75.77242 * 10 9 8 12 12 H 1.08993 * 109.47354 * 305.24069 * 11 10 9 13 13 C 1.52997 * 109.46787 * 65.24689 * 11 10 9 14 14 C 1.53005 * 109.47202 * 185.24178 * 11 10 9 15 15 C 1.50697 * 109.47385 * 175.00316 * 14 11 10 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 11 17 17 C 1.37871 * 119.99985 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00318 * 359.72171 * 17 15 14 19 19 Si 1.86811 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47018 * 179.72094 * 19 17 15 21 21 H 1.48490 * 109.47131 * 299.72387 * 19 17 15 22 22 H 1.48502 * 109.46771 * 59.72388 * 19 17 15 23 23 C 1.46964 * 110.87781 * 59.31867 * 9 8 7 24 24 C 1.46954 * 111.00303 * 303.79574 * 6 3 2 25 25 H 1.09001 * 109.46631 * 60.00522 * 1 2 3 26 26 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47028 * 300.00519 * 1 2 3 28 28 H 1.08993 * 109.47246 * 239.99054 * 2 1 3 29 29 H 1.09002 * 109.46661 * 120.00029 * 2 1 3 30 30 H 1.08994 * 109.47011 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47009 * 300.00693 * 4 3 2 32 32 H 1.09002 * 109.46625 * 60.00159 * 4 3 2 33 33 H 1.08997 * 109.46674 * 299.99529 * 5 3 2 34 34 H 1.08990 * 109.47039 * 60.00237 * 5 3 2 35 35 H 1.09003 * 109.46813 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.48766 * 63.21931 * 7 6 3 37 37 H 1.08998 * 109.49111 * 303.15841 * 7 6 3 38 38 H 1.09003 * 109.49100 * 181.63467 * 8 7 6 39 39 H 1.09000 * 109.48794 * 61.56662 * 8 7 6 40 40 H 1.09013 * 109.46935 * 315.77724 * 10 9 8 41 41 H 1.09001 * 109.47496 * 195.77856 * 10 9 8 42 42 H 1.09002 * 109.47521 * 65.00976 * 13 11 10 43 43 H 1.09002 * 109.46932 * 185.00654 * 13 11 10 44 44 H 1.09004 * 109.47019 * 305.00159 * 13 11 10 45 45 H 1.08997 * 109.46944 * 55.00048 * 14 11 10 46 46 H 1.09003 * 109.46867 * 295.00390 * 14 11 10 47 47 H 0.97000 * 119.99778 * 0.28166 * 18 17 15 48 48 H 1.09001 * 109.48977 * 60.65087 * 23 9 8 49 49 H 1.08996 * 109.48650 * 180.71600 * 23 9 8 50 50 H 1.08997 * 109.49370 * 296.78284 * 24 6 3 51 51 H 1.09005 * 109.48940 * 56.84244 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1636 -1.2494 6 7 3.5090 1.4424 0.0006 7 6 4.0358 2.8143 0.0000 8 6 5.5636 2.7713 -0.0796 9 7 6.0898 2.0088 1.0611 10 6 7.5587 2.0087 1.0619 11 6 8.0685 3.3681 1.5445 12 1 7.6310 4.1579 0.9340 13 6 7.6683 3.5728 3.0070 14 6 9.5929 3.4140 1.4218 15 6 10.0845 4.7927 1.7803 16 1 9.3801 5.5594 2.0675 17 6 11.4334 5.0753 1.7418 18 7 12.2916 4.1402 1.3973 19 14 12.0427 6.7846 2.1856 20 1 13.5227 6.8273 2.0724 21 1 11.4464 7.7789 1.2579 22 1 11.6433 7.1060 3.5793 23 6 5.5630 0.6368 1.0617 24 6 4.0352 0.6794 1.1410 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5139 0.8900 30 1 1.8931 3.1915 1.2489 31 1 0.4400 2.1638 1.2490 32 1 1.8933 1.6500 2.1392 33 1 1.8936 1.6497 -2.1392 34 1 0.4402 2.1637 -1.2494 35 1 1.8931 3.1914 -1.2492 36 1 3.7335 3.3203 0.9169 37 1 3.6418 3.3548 -0.8607 38 1 5.9580 3.7871 -0.0509 39 1 5.8659 2.2896 -1.0094 40 1 7.9225 1.8222 0.0513 41 1 7.9217 1.2267 1.7288 42 1 8.1770 2.8367 3.6294 43 1 7.9530 4.5760 3.3245 44 1 6.5898 3.4519 3.1089 45 1 9.8821 3.1802 0.3972 46 1 10.0342 2.6833 2.0996 47 1 11.9752 3.2528 1.1665 48 1 5.8653 0.1308 0.1448 49 1 5.9570 0.0965 1.9224 50 1 3.7330 1.1607 2.0712 51 1 3.6409 -0.3364 1.1121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602704705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -31.660568 kcal Electronic energy + Delta-G solvation = -23690.886459 eV Core-core repulsion = 20623.512533 eV Total energy + Delta-G solvation = -3067.373926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07315 -38.90288 -36.78294 -34.77526 -33.41584 -32.15737 -30.48355 -28.65163 -28.28640 -27.94413 -26.02464 -25.29083 -24.17411 -23.59527 -21.19731 -20.70210 -19.33202 -18.88864 -17.53642 -16.35469 -16.14816 -16.09147 -15.81824 -15.62415 -15.58794 -15.44400 -15.14428 -14.80044 -14.61672 -13.89328 -13.74544 -13.56365 -13.40654 -13.36229 -13.03353 -12.93822 -12.78342 -12.59811 -12.51490 -12.41842 -12.25328 -12.13923 -11.98855 -11.95325 -11.82735 -11.58548 -11.47806 -11.42777 -11.25001 -11.07792 -10.55566 -10.52354 -9.36663 -9.15529 -8.65767 -6.34678 1.51734 1.60534 1.79508 2.57304 2.85293 2.90696 3.18349 3.75972 3.85554 3.90759 3.99426 4.14192 4.18440 4.24894 4.32398 4.36553 4.41322 4.41975 4.49821 4.53174 4.57985 4.68159 4.73928 4.75384 4.77191 4.80246 4.82046 4.87625 4.93942 4.98906 5.01334 5.03996 5.07203 5.15022 5.19012 5.20772 5.26318 5.30958 5.36288 5.46655 5.50103 5.50977 5.62902 5.96869 6.04509 6.09105 6.20278 6.23058 6.27617 6.62061 7.46317 8.74867 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003022 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.319137 B = 9264.526692 C = 9481.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.105 3.895 4 C -0.178 4.178 5 C -0.139 4.139 6 N -0.535 5.535 7 C 0.064 3.936 8 C 0.057 3.943 9 N -0.536 5.536 10 C 0.073 3.927 11 C -0.061 4.061 12 H 0.049 0.951 13 C -0.108 4.108 14 C 0.017 3.983 15 C -0.604 4.604 16 H 0.051 0.949 17 C -0.043 4.043 18 N -0.942 5.942 19 Si 1.115 2.885 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.269 1.269 23 C 0.056 3.944 24 C 0.061 3.939 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.066 0.934 45 H -0.020 1.020 46 H -0.013 1.013 47 H 0.254 0.746 48 H 0.031 0.969 49 H 0.082 0.918 50 H 0.040 0.960 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.155 -7.475 -2.462 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.016 3.984 4 C -0.237 4.237 5 C -0.197 4.197 6 N -0.260 5.260 7 C -0.064 4.064 8 C -0.071 4.071 9 N -0.260 5.260 10 C -0.055 4.055 11 C -0.080 4.080 12 H 0.067 0.933 13 C -0.166 4.166 14 C -0.021 4.021 15 C -0.642 4.642 16 H 0.069 0.931 17 C -0.240 4.240 18 N -0.580 5.580 19 Si 0.937 3.063 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.072 4.072 24 C -0.067 4.067 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.085 0.915 45 H -0.002 1.002 46 H 0.005 0.995 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.100 0.900 50 H 0.058 0.942 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.817 -6.571 -2.317 25.776 hybrid contribution -0.637 -1.102 -0.286 1.305 sum -25.454 -7.673 -2.603 26.712 Atomic orbital electron populations 1.21872 0.94413 1.02171 1.02387 1.21579 0.96608 0.94423 1.02105 1.21145 0.85650 0.96368 0.95254 1.22487 1.02580 1.00358 0.98226 1.21933 1.01479 0.99726 0.96518 1.62405 1.07673 1.13367 1.42547 1.22117 0.92794 0.90219 1.01263 1.22171 0.95406 0.98294 0.91229 1.62134 1.06833 1.14318 1.42753 1.22016 0.87118 0.97866 0.98452 1.20839 0.94347 0.95489 0.97334 0.93279 1.21426 1.00343 0.99953 0.94834 1.19194 0.93381 0.95937 0.93539 1.22418 0.94846 0.97950 1.48955 0.93060 1.27411 0.94288 1.08216 0.94040 1.70917 1.37618 1.04318 1.45135 0.82963 0.75641 0.70280 0.77457 1.20989 1.19437 1.19392 1.22230 0.95402 0.88904 1.00683 1.22175 0.93061 0.99257 0.92174 0.91910 0.92165 0.92221 0.91899 0.91966 0.93176 0.90536 0.92969 0.92467 0.90531 0.92885 0.94166 0.89256 0.91299 0.95290 0.96328 0.91412 0.94707 0.94595 0.91505 1.00192 0.99491 0.93713 0.95055 0.89981 0.94205 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.21 71.98 0.66 -0.94 16 2 C -0.11 -1.52 4.64 30.60 0.14 -1.38 16 3 C 0.10 1.69 0.48 3.53 0.00 1.69 16 4 C -0.18 -2.78 7.42 71.98 0.53 -2.25 16 5 C -0.14 -2.04 7.89 71.98 0.57 -1.47 16 6 N -0.54 -11.05 4.53 -846.23 -3.83 -14.88 16 7 C 0.06 1.47 4.82 86.31 0.42 1.88 16 8 C 0.06 1.63 5.43 86.31 0.47 2.10 16 9 N -0.54 -16.04 4.02 -895.72 -3.60 -19.64 16 10 C 0.07 2.64 4.39 86.30 0.38 3.02 16 11 C -0.06 -2.60 2.39 -10.79 -0.03 -2.63 16 12 H 0.05 2.15 6.73 -2.39 -0.02 2.14 16 13 C -0.11 -4.31 8.87 71.98 0.64 -3.67 16 14 C 0.02 0.91 3.76 29.85 0.11 1.02 16 15 C -0.60 -35.19 8.47 25.60 0.22 -34.97 16 16 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 17 C -0.04 -2.55 5.46 84.65 0.46 -2.09 16 18 N -0.94 -60.07 13.65 21.44 0.29 -59.78 16 19 Si 1.12 51.49 29.90 68.60 2.05 53.54 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.06 1.40 5.56 86.31 0.48 1.88 16 24 C 0.06 1.27 4.83 86.31 0.42 1.69 16 25 H 0.06 0.61 6.43 -2.39 -0.02 0.60 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.88 6.28 -2.39 -0.01 0.86 16 30 H 0.05 0.88 6.48 -2.39 -0.02 0.86 16 31 H 0.08 0.97 6.43 -2.39 -0.02 0.96 16 32 H 0.05 0.88 6.56 -2.39 -0.02 0.86 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 35 H 0.05 0.81 6.34 -2.39 -0.02 0.80 16 36 H 0.04 0.97 6.48 -2.39 -0.02 0.95 16 37 H 0.09 1.84 6.14 -2.39 -0.01 1.83 16 38 H 0.07 2.12 6.71 -2.39 -0.02 2.11 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.02 0.70 8.00 -2.38 -0.02 0.68 16 41 H 0.07 2.40 7.84 -2.39 -0.02 2.38 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.03 1.52 7.10 -2.39 -0.02 1.50 16 44 H 0.07 2.34 7.63 -2.38 -0.02 2.33 16 45 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 46 H -0.01 -0.75 8.00 -2.39 -0.02 -0.77 16 47 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 48 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 50 H 0.04 0.88 6.56 -2.39 -0.02 0.86 16 51 H 0.09 1.66 6.06 -2.38 -0.01 1.65 16 Total: -1.00 -65.43 364.83 1.35 -64.08 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.97 Total: 12.80 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 5.47 Total: -36.12 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -7.14 Total: -94.30 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -65.43 1.35 -64.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -65.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds