Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47228 * 2 1 4 4 C 1.52993 * 109.47083 * 60.00123 * 3 2 1 5 5 C 1.53001 * 109.47045 * 300.00451 * 3 2 1 6 6 N 1.46896 * 109.47171 * 180.02562 * 3 2 1 7 7 C 1.46961 * 110.99735 * 179.97438 * 6 3 2 8 8 C 1.53059 * 109.36302 * 183.18721 * 7 6 3 9 9 N 1.46952 * 109.36370 * 301.60193 * 8 7 6 10 10 C 1.46906 * 110.99889 * 183.18679 * 9 8 7 11 11 C 1.53000 * 109.47072 * 170.00107 * 10 9 8 12 12 H 1.08998 * 109.47666 * 54.99810 * 11 10 9 13 13 C 1.53005 * 109.46913 * 294.99925 * 11 10 9 14 14 C 1.52998 * 109.46937 * 175.00313 * 11 10 9 15 15 C 1.50707 * 109.47006 * 184.99877 * 14 11 10 16 16 H 1.07996 * 119.99871 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99966 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99820 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46945 * 90.00756 * 19 17 15 21 21 H 1.48501 * 109.46889 * 210.00379 * 19 17 15 22 22 H 1.48499 * 109.47189 * 330.00137 * 19 17 15 23 23 C 1.46961 * 110.88410 * 59.32054 * 9 8 7 24 24 C 1.46955 * 111.00246 * 303.79989 * 6 3 2 25 25 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47181 * 299.99730 * 1 2 3 27 27 H 1.08991 * 109.47368 * 59.99840 * 1 2 3 28 28 H 1.09000 * 109.47181 * 240.00270 * 2 1 3 29 29 H 1.09001 * 109.47187 * 120.00203 * 2 1 3 30 30 H 1.09003 * 109.47764 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47181 * 300.00249 * 4 3 2 32 32 H 1.09001 * 109.47506 * 60.00236 * 4 3 2 33 33 H 1.09000 * 109.46983 * 299.99497 * 5 3 2 34 34 H 1.09002 * 109.47195 * 59.99765 * 5 3 2 35 35 H 1.09000 * 109.47184 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.48904 * 63.22353 * 7 6 3 37 37 H 1.08989 * 109.49349 * 303.15552 * 7 6 3 38 38 H 1.08999 * 109.48651 * 181.63251 * 8 7 6 39 39 H 1.08996 * 109.48556 * 61.57139 * 8 7 6 40 40 H 1.08993 * 109.47164 * 289.99960 * 10 9 8 41 41 H 1.08996 * 109.46920 * 49.99994 * 10 9 8 42 42 H 1.09000 * 109.46871 * 179.97438 * 13 11 10 43 43 H 1.08999 * 109.47528 * 300.00033 * 13 11 10 44 44 H 1.08995 * 109.47281 * 60.00455 * 13 11 10 45 45 H 1.09002 * 109.46907 * 304.99730 * 14 11 10 46 46 H 1.09002 * 109.47546 * 64.99887 * 14 11 10 47 47 H 0.96993 * 119.99901 * 180.02562 * 18 17 15 48 48 H 1.09003 * 109.48904 * 60.64354 * 23 9 8 49 49 H 1.09002 * 109.49205 * 180.70887 * 23 9 8 50 50 H 1.09008 * 109.48713 * 296.78155 * 24 6 3 51 51 H 1.09002 * 109.48661 * 56.82117 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5299 2.1638 -1.2492 6 7 3.5089 1.4425 -0.0006 7 6 4.0356 2.8145 -0.0013 8 6 5.5634 2.7716 -0.0822 9 7 6.0905 2.0087 1.0579 10 6 7.5595 2.0087 1.0572 11 6 8.0701 1.4269 2.3770 12 1 7.6355 0.4392 2.5310 13 6 7.6658 2.3474 3.5304 14 6 9.5949 1.3112 2.3273 15 6 10.0876 0.6259 3.5759 16 1 9.3835 0.3046 4.3291 17 6 11.4371 0.4081 3.7559 18 7 12.2944 0.7989 2.8383 19 14 12.0478 -0.4408 5.3038 20 1 12.0941 -1.9078 5.0783 21 1 13.4089 0.0524 5.6345 22 1 11.1260 -0.1416 6.4289 23 6 5.5639 0.6367 1.0585 24 6 4.0361 0.6791 1.1391 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8937 3.1913 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8932 1.6500 -2.1392 34 1 0.4399 2.1638 -1.2491 35 1 1.8929 3.1916 -1.2490 36 1 3.7341 3.3202 0.9161 37 1 3.6409 3.3551 -0.8614 38 1 5.9577 3.7874 -0.0535 39 1 5.8648 2.2903 -1.0125 40 1 7.9225 1.4016 0.2280 41 1 7.9228 3.0303 0.9458 42 1 8.0291 1.9327 4.4707 43 1 8.1003 3.3351 3.3765 44 1 6.5795 2.4299 3.5658 45 1 9.8867 0.7284 1.4537 46 1 10.0330 2.3072 2.2626 47 1 13.2437 0.6453 2.9648 48 1 5.8654 0.1310 0.1411 49 1 5.9586 0.0960 1.9187 50 1 3.7346 1.1601 2.0697 51 1 3.6414 -0.3365 1.1102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -9.180770 kcal Electronic energy + Delta-G solvation = -23689.061528 eV Core-core repulsion = 20622.662400 eV Total energy + Delta-G solvation = -3066.399129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10351 -37.64384 -35.04626 -33.06924 -31.76751 -31.18740 -29.57848 -27.57647 -27.19122 -26.50117 -24.86467 -23.88882 -22.90466 -22.17721 -20.03242 -18.76768 -18.46019 -16.75189 -16.19555 -15.28237 -14.99258 -14.82734 -14.74588 -14.54145 -14.35801 -14.18526 -13.89113 -13.44750 -12.85011 -12.79064 -12.63417 -12.46631 -12.23450 -12.00700 -11.80144 -11.63823 -11.50064 -11.43194 -11.29374 -11.12591 -10.91234 -10.84337 -10.80632 -10.67991 -10.53803 -10.33599 -10.23757 -10.13194 -9.54570 -9.08904 -8.91238 -8.31015 -8.29907 -7.92492 -5.94938 -3.95839 3.34580 3.40837 3.44267 3.75890 4.20851 4.50784 4.50872 4.67932 4.89100 4.96859 5.09120 5.17666 5.20673 5.28498 5.32770 5.39391 5.41170 5.43648 5.49479 5.51596 5.63905 5.68915 5.74346 5.77151 5.81561 5.82041 5.84781 5.92759 5.97363 6.02090 6.10747 6.14803 6.19656 6.23005 6.27368 6.44280 6.59857 6.74190 7.01813 7.05144 7.10726 7.19607 7.25350 7.45985 7.51027 7.73204 7.89536 8.05733 8.49965 9.10638 9.67345 11.16679 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.003116 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.827925 B = 8982.799863 C = 9347.168372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.141 4.141 6 N -0.528 5.528 7 C 0.055 3.945 8 C 0.056 3.944 9 N -0.535 5.535 10 C 0.062 3.938 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.055 3.945 24 C 0.054 3.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.037 0.963 49 H 0.085 0.915 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 2.350 -7.328 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C 0.017 3.983 4 C -0.241 4.241 5 C -0.198 4.198 6 N -0.253 5.253 7 C -0.073 4.073 8 C -0.072 4.072 9 N -0.260 5.260 10 C -0.065 4.065 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.178 4.178 14 C -0.010 4.010 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.073 4.073 24 C -0.074 4.074 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.088 2.366 -7.374 24.352 hybrid contribution 0.580 -0.445 0.814 1.094 sum -22.508 1.921 -6.560 23.523 Atomic orbital electron populations 1.21894 0.95757 1.01568 1.01940 1.21612 0.95467 0.95396 1.02629 1.21037 0.87193 0.95453 0.94648 1.22530 1.01642 1.01042 0.98880 1.21938 1.00465 1.00099 0.97292 1.62397 1.06042 1.13885 1.42942 1.22220 0.94680 0.89632 1.00763 1.22123 0.93904 0.98606 0.92584 1.62202 1.08999 1.13349 1.41457 1.22294 0.84869 1.00773 0.98606 1.21215 0.98952 0.97601 0.92139 0.92655 1.21565 0.98883 0.98650 0.98731 1.19125 0.88059 0.96971 0.96883 1.21238 0.91784 1.37465 1.04450 0.92612 1.25022 0.97122 0.95993 0.96435 1.69968 1.02133 1.47503 1.34122 0.86638 0.78104 0.79746 0.83783 1.20774 1.21325 1.19896 1.22182 0.93436 0.90296 1.01369 1.22255 0.94888 0.98216 0.92034 0.92810 0.92574 0.92432 0.91228 0.91737 0.92382 0.92008 0.92307 0.91927 0.92137 0.92622 0.93820 0.90567 0.90713 0.94537 0.95348 0.91426 0.92873 0.94280 0.94093 0.96982 0.96629 0.93130 0.94495 0.89665 0.93848 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.21 37.16 0.34 -0.73 16 2 C -0.11 -0.97 4.64 -26.73 -0.12 -1.09 16 3 C 0.11 0.98 0.48 -131.61 -0.06 0.91 16 4 C -0.18 -1.63 7.43 37.15 0.28 -1.36 16 5 C -0.14 -1.15 7.89 37.16 0.29 -0.86 16 6 N -0.53 -5.95 4.53 -218.82 -0.99 -6.94 16 7 C 0.05 0.63 4.82 -3.76 -0.02 0.61 16 8 C 0.06 0.74 5.61 -3.77 -0.02 0.72 16 9 N -0.54 -8.21 4.16 -234.47 -0.98 -9.19 16 10 C 0.06 1.10 4.35 -3.82 -0.02 1.09 16 11 C -0.08 -1.67 2.26 -90.62 -0.21 -1.87 16 12 H 0.06 1.17 6.28 -51.93 -0.33 0.84 16 13 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 16 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.06 0.80 5.41 -3.77 -0.02 0.78 16 24 C 0.05 0.66 4.83 -3.77 -0.02 0.64 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 27 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 30 H 0.06 0.55 6.48 -51.93 -0.34 0.21 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 35 H 0.05 0.45 6.34 -51.93 -0.33 0.12 16 36 H 0.04 0.53 6.49 -51.93 -0.34 0.19 16 37 H 0.08 0.77 6.14 -51.94 -0.32 0.45 16 38 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 42 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 1.32 6.25 -51.93 -0.32 0.99 16 50 H 0.04 0.56 6.57 -51.92 -0.34 0.22 16 51 H 0.08 0.87 6.06 -51.93 -0.31 0.55 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -29.48 365.54 -10.04 -39.52 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -9.54 Total: -3.36 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 0.24 Total: -15.89 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -1.23 Total: -42.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.48 -10.04 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.339 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds