Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50699 * 109.47337 * 64.99823 * 4 2 1 6 6 H 1.08000 * 120.00234 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00226 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99819 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99652 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47064 * 90.00558 * 9 7 5 11 11 H 1.48501 * 109.46940 * 210.00363 * 9 7 5 12 12 H 1.48500 * 109.47335 * 329.99861 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 14 14 N 1.46895 * 109.47089 * 294.99991 * 13 2 1 15 15 C 1.46899 * 111.00239 * 180.02562 * 14 13 2 16 16 H 1.08994 * 109.47224 * 325.00056 * 15 14 13 17 17 C 1.53001 * 109.47118 * 85.00100 * 15 14 13 18 18 C 1.53000 * 109.47373 * 205.00002 * 15 14 13 19 19 N 1.46898 * 109.46839 * 55.00153 * 18 15 14 20 20 C 1.46846 * 111.00180 * 45.79051 * 19 18 15 21 21 C 1.53046 * 109.52058 * 185.84071 * 20 19 18 22 22 C 1.53120 * 109.27525 * 300.81420 * 21 20 19 23 23 C 1.52997 * 109.57293 * 177.59071 * 22 21 20 24 24 C 1.53118 * 109.15781 * 57.66154 * 22 21 20 25 25 C 1.46849 * 110.99793 * 170.00084 * 19 18 15 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 31 31 H 0.97001 * 119.99913 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47065 * 55.00225 * 13 2 1 33 33 H 1.09000 * 109.46818 * 175.00170 * 13 2 1 34 34 H 1.00905 * 111.00235 * 303.95635 * 14 13 2 35 35 H 1.08995 * 109.47105 * 180.02562 * 17 15 14 36 36 H 1.09007 * 109.47029 * 300.00242 * 17 15 14 37 37 H 1.08994 * 109.47108 * 59.99885 * 17 15 14 38 38 H 1.09001 * 109.47370 * 174.99919 * 18 15 14 39 39 H 1.08997 * 109.47048 * 295.00052 * 18 15 14 40 40 H 1.08999 * 109.46237 * 305.85476 * 20 19 18 41 41 H 1.08998 * 109.46173 * 65.82313 * 20 19 18 42 42 H 1.08999 * 109.49853 * 180.87845 * 21 20 19 43 43 H 1.08998 * 109.50358 * 60.76128 * 21 20 19 44 44 H 1.08994 * 109.52810 * 297.75289 * 22 21 20 45 45 H 1.08999 * 109.47668 * 300.29592 * 23 22 21 46 46 H 1.09009 * 109.47147 * 60.29227 * 23 22 21 47 47 H 1.08997 * 109.47477 * 180.28674 * 23 22 21 48 48 H 1.09002 * 109.50101 * 182.39921 * 24 22 21 49 49 H 1.09001 * 109.50832 * 62.28151 * 24 22 21 50 50 H 1.08999 * 109.46259 * 294.17229 * 25 19 18 51 51 H 1.08998 * 109.46874 * 54.15347 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7284 8 7 1.6440 0.2770 -4.7994 9 14 2.9628 -1.9886 -3.9029 10 1 2.0236 -3.1330 -4.0192 11 1 3.8109 -1.9188 -5.1199 12 1 3.8253 -2.1753 -2.7086 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 2.0826 -1.7075 3.5334 17 6 3.5693 -0.2050 3.9490 18 6 1.2372 -0.2225 4.8452 19 7 -0.1654 -0.5186 4.5246 20 6 -0.3001 -1.8590 3.9402 21 6 -1.7455 -2.0762 3.4863 22 6 -2.6808 -1.9273 4.6894 23 6 -4.1326 -2.0837 4.2324 24 6 -2.4860 -0.5407 5.3089 25 6 -1.0192 -0.3679 5.7099 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2952 31 1 1.8913 -0.0459 -5.6801 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7994 1.2055 34 1 1.9882 0.9872 2.3966 35 1 3.9215 -0.6980 4.8550 36 1 4.2025 -0.4929 3.1096 37 1 3.6126 0.8758 4.0827 38 1 1.5331 -0.7824 5.7324 39 1 1.3490 0.8449 5.0352 40 1 0.3673 -1.9503 3.0832 41 1 -0.0372 -2.6087 4.6865 42 1 -1.8486 -3.0769 3.0668 43 1 -2.0046 -1.3354 2.7299 44 1 -2.4474 -2.6929 5.4293 45 1 -4.3645 -1.3193 3.4909 46 1 -4.2704 -3.0711 3.7916 47 1 -4.7972 -1.9724 5.0891 48 1 -3.1184 -0.4443 6.1915 49 1 -2.7568 0.2244 4.5812 50 1 -0.7530 -1.1246 6.4478 51 1 -0.8744 0.6239 6.1382 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = -25.626082 kcal Electronic energy + Delta-G solvation = -23672.606218 eV Core-core repulsion = 20605.493967 eV Total energy + Delta-G solvation = -3067.112251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.47609 -37.42368 -35.37869 -33.72112 -32.15813 -30.82539 -29.99040 -28.29219 -27.18859 -25.40488 -24.58451 -23.38761 -22.10746 -21.90624 -20.32241 -19.59114 -18.88920 -16.74849 -16.14893 -15.54502 -15.00632 -14.75786 -14.53190 -14.32675 -14.27019 -14.03259 -13.72111 -13.20189 -13.06106 -12.92113 -12.57884 -12.39575 -12.26693 -12.22480 -11.85996 -11.80680 -11.57024 -11.48404 -11.29209 -11.18221 -10.89784 -10.88410 -10.68010 -10.65441 -10.36916 -10.29312 -10.06247 -9.70459 -9.68663 -9.30921 -8.99358 -8.47367 -8.12402 -7.95370 -5.97679 -3.93943 3.33995 3.41193 3.44780 3.89999 4.42157 4.50473 4.67011 4.76575 4.78043 4.86389 5.06738 5.20571 5.25039 5.35837 5.36163 5.36867 5.39462 5.50334 5.58239 5.60163 5.64426 5.64805 5.68813 5.74742 5.81689 5.82316 5.92294 5.98292 6.02239 6.06149 6.09324 6.13050 6.18881 6.25975 6.42658 6.46486 6.53952 6.71386 6.94129 7.14962 7.18351 7.24152 7.25735 7.37537 7.44318 7.54804 7.75992 7.88399 8.62945 9.08993 9.65591 11.15917 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.003960 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.339996 B = 7068.620304 C = 8019.767307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.661 5.661 15 C 0.079 3.921 16 H 0.074 0.926 17 C -0.182 4.182 18 C 0.071 3.929 19 N -0.512 5.512 20 C 0.058 3.942 21 C -0.110 4.110 22 C -0.093 4.093 23 C -0.146 4.146 24 C -0.109 4.109 25 C 0.055 3.945 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.338 0.662 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.016 0.984 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.023 0.977 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -3.877 23.611 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.292 5.292 15 C -0.032 4.032 16 H 0.093 0.907 17 C -0.242 4.242 18 C -0.057 4.057 19 N -0.236 5.236 20 C -0.070 4.070 21 C -0.148 4.148 22 C -0.112 4.112 23 C -0.203 4.203 24 C -0.147 4.147 25 C -0.073 4.073 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.041 0.959 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.933 -3.823 23.096 23.925 hybrid contribution 1.859 -1.300 0.325 2.292 sum -3.074 -5.123 23.421 24.171 Atomic orbital electron populations 1.21569 0.95117 1.00449 1.00758 1.20970 0.96457 0.98858 0.92745 0.92377 1.19613 0.95550 0.95850 0.93678 1.21151 1.35027 1.09538 0.89094 0.90828 1.25029 0.95717 0.96882 0.95986 1.69917 1.47333 1.39345 0.97966 0.86814 0.80650 0.84493 0.77504 1.20398 1.21563 1.19198 1.22180 0.96701 0.97580 0.90158 1.60541 1.63165 1.05246 1.00200 1.21665 0.91287 0.98995 0.91248 0.90741 1.22490 0.97995 1.01807 1.01879 1.22091 0.87770 1.00800 0.95085 1.61791 1.06331 1.27947 1.27536 1.22141 0.97766 0.88029 0.99039 1.21626 0.93842 1.01655 0.97682 1.21178 0.95355 0.97064 0.97602 1.21810 0.95728 1.01766 1.01020 1.21617 0.95175 0.97453 1.00465 1.22084 0.93680 1.00259 0.91289 0.93160 0.92647 0.94503 0.97152 0.97201 0.92898 0.91997 0.96263 0.84376 0.92622 0.92292 0.92297 0.95560 0.90974 0.89226 0.96583 0.92119 0.90435 0.92197 0.92379 0.92872 0.93122 0.92189 0.90840 0.95881 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.40 2.48 -90.62 -0.22 -1.63 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.31 16 5 C -0.51 -14.55 8.96 -34.44 -0.31 -14.85 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.24 13.96 55.43 0.77 -27.47 16 9 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 C 0.06 1.00 4.70 -3.83 -0.02 0.98 16 14 N -0.66 -8.84 4.91 -106.74 -0.52 -9.36 16 15 C 0.08 0.88 1.90 -67.71 -0.13 0.75 16 16 H 0.07 0.89 6.20 -51.93 -0.32 0.56 16 17 C -0.18 -1.82 9.16 37.16 0.34 -1.48 16 18 C 0.07 0.75 4.97 -3.82 -0.02 0.73 16 19 N -0.51 -5.86 4.54 -234.67 -1.07 -6.92 16 20 C 0.06 0.68 4.80 -3.83 -0.02 0.66 16 21 C -0.11 -1.24 5.38 -26.65 -0.14 -1.38 16 22 C -0.09 -0.90 2.79 -90.50 -0.25 -1.15 16 23 C -0.15 -1.29 9.20 37.16 0.34 -0.95 16 24 C -0.11 -1.04 5.38 -26.65 -0.14 -1.18 16 25 C 0.06 0.55 5.42 -3.83 -0.02 0.53 16 26 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 27 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.01 0.25 7.20 -51.93 -0.37 -0.13 16 30 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.06 1.00 7.36 -51.93 -0.38 0.62 16 33 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 34 H 0.34 4.49 8.47 -39.29 -0.33 4.16 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.18 4.67 -51.93 -0.24 0.94 16 41 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -29.61 379.65 -10.54 -40.15 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -10.32 Total: 0.03 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.46 Total: -19.52 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.82 Total: -43.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.61 -10.54 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.525 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds