Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46898 * 2 1 4 4 C 1.52997 * 109.46583 * 119.99962 * 2 1 3 5 5 C 1.50700 * 109.47289 * 294.99777 * 4 2 1 6 6 H 1.07999 * 119.99763 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99784 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00417 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99626 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47165 * 60.00104 * 9 7 5 11 11 H 1.48500 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47158 * 299.99987 * 9 7 5 13 13 C 1.53002 * 109.46886 * 239.99785 * 2 1 3 14 14 N 1.46895 * 109.46957 * 65.00417 * 13 2 1 15 15 C 1.46900 * 110.99690 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.47269 * 324.99579 * 15 14 13 17 17 C 1.53002 * 109.47442 * 84.99871 * 15 14 13 18 18 C 1.53000 * 109.46963 * 204.99987 * 15 14 13 19 19 N 1.46900 * 109.47272 * 55.00091 * 18 15 14 20 20 C 1.46848 * 110.99918 * 169.99731 * 19 18 15 21 21 C 1.53037 * 109.52381 * 174.15634 * 20 19 18 22 22 C 1.53123 * 109.27398 * 59.18254 * 21 20 19 23 23 C 1.53000 * 109.52334 * 182.37923 * 22 21 20 24 24 C 1.53120 * 109.21163 * 302.31409 * 22 21 20 25 25 C 1.46845 * 111.00045 * 45.79142 * 19 18 15 26 26 H 1.08998 * 109.47796 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47582 * 300.00364 * 1 2 3 28 28 H 1.09003 * 109.47019 * 59.99913 * 1 2 3 29 29 H 1.08995 * 109.47400 * 55.00046 * 4 2 1 30 30 H 1.09013 * 109.46995 * 174.99844 * 4 2 1 31 31 H 0.97005 * 119.99733 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47331 * 305.00188 * 13 2 1 33 33 H 1.09000 * 109.46951 * 185.00281 * 13 2 1 34 34 H 1.00901 * 111.00217 * 303.94557 * 14 13 2 35 35 H 1.08999 * 109.46971 * 300.00447 * 17 15 14 36 36 H 1.09008 * 109.46815 * 59.99615 * 17 15 14 37 37 H 1.08998 * 109.47202 * 179.97438 * 17 15 14 38 38 H 1.09002 * 109.47284 * 294.99750 * 18 15 14 39 39 H 1.09007 * 109.47246 * 175.00190 * 18 15 14 40 40 H 1.09006 * 109.46097 * 54.14433 * 20 19 18 41 41 H 1.08996 * 109.46972 * 294.17743 * 20 19 18 42 42 H 1.08996 * 109.50616 * 299.24564 * 21 20 19 43 43 H 1.08992 * 109.50671 * 179.12200 * 21 20 19 44 44 H 1.09002 * 109.52319 * 62.25202 * 22 21 20 45 45 H 1.09003 * 109.47030 * 59.87206 * 23 22 21 46 46 H 1.08994 * 109.47335 * 179.87469 * 23 22 21 47 47 H 1.09001 * 109.46737 * 299.87118 * 23 22 21 48 48 H 1.09004 * 109.49930 * 177.63007 * 24 22 21 49 49 H 1.08997 * 109.50353 * 297.74224 * 24 22 21 50 50 H 1.09003 * 109.45905 * 305.85870 * 25 19 18 51 51 H 1.09002 * 109.46166 * 65.83312 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0799 0.9742 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 2.6770 -1.5183 3.8511 9 14 1.4995 0.5635 5.2496 10 1 0.0195 0.6702 5.3095 11 1 1.9953 -0.1360 6.4620 12 1 2.0917 1.9238 5.1865 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 1 3.0895 -1.0976 -3.4737 17 6 1.1140 -1.6919 -4.0943 18 6 2.2788 0.4083 -4.7835 19 7 3.1575 1.4938 -4.3279 20 6 3.5191 2.3804 -5.4413 21 6 4.3112 3.5757 -4.9066 22 6 5.5730 3.0711 -4.2009 23 6 6.3390 4.2577 -3.6126 24 6 5.1720 2.1125 -3.0762 25 6 4.3537 0.9593 -3.6648 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6053 -1.7197 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9248 -1.8408 4.7318 32 1 1.6053 -1.7198 -1.2952 33 1 3.1263 -0.7996 -1.2056 34 1 0.6528 0.1792 -2.4753 35 1 1.0050 -2.4291 -3.2989 36 1 0.1502 -1.2208 -4.2877 37 1 1.4658 -2.1843 -5.0009 38 1 1.3003 0.8155 -5.0381 39 1 2.7143 -0.0671 -5.6625 40 1 2.6128 2.7355 -5.9319 41 1 4.1293 1.8321 -6.1589 42 1 3.6967 4.1325 -4.1992 43 1 4.5929 4.2256 -5.7350 44 1 6.2063 2.5477 -4.9172 45 1 5.7049 4.7805 -2.8965 46 1 7.2357 3.8974 -3.1086 47 1 6.6220 4.9406 -4.4137 48 1 6.0683 1.7178 -2.5978 49 1 4.5710 2.6464 -2.3401 50 1 4.0535 0.2821 -2.8651 51 1 4.9601 0.4177 -4.3908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -29.064350 kcal Electronic energy + Delta-G solvation = -23515.876475 eV Core-core repulsion = 20448.615130 eV Total energy + Delta-G solvation = -3067.261345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.41508 -37.39168 -35.29509 -33.65255 -32.15952 -30.76123 -29.77878 -28.22022 -26.73823 -25.38395 -24.71231 -23.33938 -22.34660 -21.89763 -20.19672 -19.50468 -18.84001 -16.46957 -16.07880 -15.42378 -14.96175 -14.74075 -14.57568 -14.39725 -14.23019 -13.98945 -13.56770 -13.13302 -13.05903 -12.74454 -12.43628 -12.34589 -12.29493 -12.00331 -11.80801 -11.72719 -11.65385 -11.34657 -11.19442 -11.13134 -10.88414 -10.79977 -10.70182 -10.60795 -10.28234 -10.24491 -10.10912 -9.99466 -9.63602 -9.07180 -8.90873 -8.28052 -8.07313 -7.88892 -5.93132 -3.93856 3.37716 3.41790 3.44667 3.95451 4.46631 4.55946 4.72044 4.81454 4.83367 4.92221 5.13074 5.26044 5.30319 5.41187 5.42168 5.42703 5.44669 5.55037 5.64280 5.65026 5.69535 5.74538 5.75428 5.83162 5.87202 5.89324 5.98177 6.02225 6.06755 6.10854 6.13648 6.16450 6.23394 6.29971 6.39816 6.51981 6.56109 6.65063 7.05212 7.18268 7.23312 7.25994 7.29768 7.54229 7.75159 7.83038 7.93412 8.07766 8.52150 9.12475 9.69277 11.18385 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003950 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.014182 B = 7086.048157 C = 8332.279948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.665 5.665 15 C 0.078 3.922 16 H 0.075 0.925 17 C -0.182 4.182 18 C 0.071 3.929 19 N -0.513 5.513 20 C 0.055 3.945 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.110 4.110 25 C 0.057 3.943 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.337 0.663 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 5.453 -20.526 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.296 5.296 15 C -0.033 4.033 16 H 0.094 0.906 17 C -0.241 4.241 18 C -0.058 4.058 19 N -0.237 5.237 20 C -0.073 4.073 21 C -0.147 4.147 22 C -0.112 4.112 23 C -0.203 4.203 24 C -0.148 4.148 25 C -0.070 4.070 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.109 0.891 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.850 6.046 -20.009 21.096 hybrid contribution -0.396 -0.899 0.230 1.009 sum 2.453 5.148 -19.779 20.585 Atomic orbital electron populations 1.21724 0.96828 1.00203 1.00219 1.21184 0.94715 1.00126 0.94045 0.91573 1.19098 0.96025 0.95270 0.90484 1.21214 1.34506 1.08222 0.91014 0.92641 1.25011 0.95375 0.95079 0.99037 1.69959 1.39133 1.21311 1.23389 0.86710 0.78848 0.80194 0.82556 1.20336 1.21425 1.20272 1.22136 0.99819 0.94368 0.89966 1.60600 1.19479 1.49263 1.00283 1.21668 0.98259 0.92182 0.91157 0.90650 1.22489 1.00010 0.99963 1.01671 1.22095 0.97318 0.91483 0.94856 1.61788 1.16592 1.18648 1.26661 1.22083 0.98613 0.94515 0.92105 1.21614 0.96188 0.96994 0.99904 1.21184 0.96153 0.96406 0.97469 1.21811 1.00071 0.97795 1.00643 1.21649 0.99161 0.96305 0.97714 1.22169 0.89848 0.96807 0.98202 0.94258 0.92055 0.94903 0.96940 0.96791 0.93115 0.96272 0.91934 0.84346 0.92232 0.92441 0.92619 0.91076 0.95549 0.91293 0.95864 0.90885 0.92208 0.92170 0.92413 0.92828 0.93161 0.91973 0.90501 0.89131 0.96510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.68 2.55 -90.62 -0.23 -1.91 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.07 1.13 4.77 -3.83 -0.02 1.11 16 14 N -0.67 -9.56 5.45 -106.73 -0.58 -10.14 16 15 C 0.08 0.94 1.90 -67.71 -0.13 0.81 16 16 H 0.08 0.97 6.20 -51.93 -0.32 0.65 16 17 C -0.18 -1.93 9.16 37.16 0.34 -1.59 16 18 C 0.07 0.80 4.97 -3.82 -0.02 0.78 16 19 N -0.51 -6.26 4.54 -234.58 -1.07 -7.33 16 20 C 0.05 0.58 5.42 -3.83 -0.02 0.56 16 21 C -0.11 -1.09 5.38 -26.65 -0.14 -1.24 16 22 C -0.09 -0.96 2.78 -90.49 -0.25 -1.21 16 23 C -0.15 -1.37 9.20 37.16 0.34 -1.03 16 24 C -0.11 -1.34 5.39 -26.58 -0.14 -1.48 16 25 C 0.06 0.72 4.80 -3.77 -0.02 0.70 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 28 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16 33 H 0.06 1.12 7.36 -51.93 -0.38 0.74 16 34 H 0.34 4.77 6.73 -39.29 -0.26 4.50 16 35 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 36 H 0.06 0.58 8.13 -51.92 -0.42 0.15 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 40 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 41 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.09 1.29 4.67 -51.93 -0.24 1.05 16 51 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -29.09 381.00 -10.89 -39.98 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -10.22 Total: 0.59 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.48 Total: -19.26 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.91 Total: -43.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.09 -10.89 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.919 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds