Wall clock time and date at job start Tue Mar 31 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47488 * 2 1 4 4 C 1.53008 * 109.46961 * 239.99932 * 2 1 3 5 5 C 1.50694 * 109.47081 * 65.00118 * 4 2 1 6 6 H 1.08001 * 120.00372 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00049 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99818 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47222 * 120.00271 * 9 7 5 12 12 H 1.48506 * 109.47071 * 240.00031 * 9 7 5 13 13 C 1.53001 * 109.46989 * 120.00191 * 2 1 3 14 14 N 1.46895 * 109.47181 * 294.99392 * 13 2 1 15 15 C 1.46893 * 111.00249 * 180.02562 * 14 13 2 16 16 H 1.09004 * 109.47111 * 35.00181 * 15 14 13 17 17 C 1.52999 * 109.47416 * 275.00332 * 15 14 13 18 18 C 1.53005 * 109.47288 * 155.00309 * 15 14 13 19 19 N 1.46897 * 109.46928 * 304.35617 * 18 15 14 20 20 C 1.46848 * 111.00437 * 284.28160 * 19 18 15 21 21 C 1.53035 * 109.52726 * 174.15935 * 20 19 18 22 22 C 1.53116 * 109.27600 * 59.17986 * 21 20 19 23 23 C 1.53005 * 109.52435 * 182.37540 * 22 21 20 24 24 C 1.53121 * 109.16145 * 302.34370 * 22 21 20 25 25 C 1.46851 * 111.00095 * 160.07034 * 19 18 15 26 26 H 1.08993 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46696 * 300.00224 * 1 2 3 28 28 H 1.09004 * 109.46694 * 59.99639 * 1 2 3 29 29 H 1.09002 * 109.46968 * 185.00631 * 4 2 1 30 30 H 1.09001 * 109.47027 * 305.00101 * 4 2 1 31 31 H 0.97008 * 120.00014 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47077 * 175.00021 * 13 2 1 33 33 H 1.09001 * 109.47095 * 54.99825 * 13 2 1 34 34 H 1.00909 * 110.99648 * 56.04623 * 14 13 2 35 35 H 1.09004 * 109.46858 * 300.00004 * 17 15 14 36 36 H 1.08999 * 109.47011 * 59.99823 * 17 15 14 37 37 H 1.08999 * 109.47298 * 179.97438 * 17 15 14 38 38 H 1.08998 * 109.47252 * 184.36098 * 18 15 14 39 39 H 1.08996 * 109.47040 * 64.35469 * 18 15 14 40 40 H 1.08999 * 109.46131 * 54.14189 * 20 19 18 41 41 H 1.09001 * 109.45412 * 294.17548 * 20 19 18 42 42 H 1.09003 * 109.50328 * 299.24079 * 21 20 19 43 43 H 1.09003 * 109.53394 * 179.13919 * 21 20 19 44 44 H 1.09003 * 109.52842 * 62.25165 * 22 21 20 45 45 H 1.09006 * 109.46596 * 59.86997 * 23 22 21 46 46 H 1.08995 * 109.47168 * 179.87331 * 23 22 21 47 47 H 1.08994 * 109.47053 * 299.87787 * 23 22 21 48 48 H 1.09005 * 109.50129 * 177.59437 * 24 22 21 49 49 H 1.08991 * 109.50355 * 297.71594 * 24 22 21 50 50 H 1.08997 * 109.46008 * 305.85467 * 25 19 18 51 51 H 1.09003 * 109.46076 * 65.83424 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3758 7 6 1.9932 -0.4018 -3.7283 8 7 2.6763 -1.5188 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 0.7421 1.7743 -4.8434 11 1 2.7179 0.9681 -5.9959 12 1 0.6458 -0.2856 -6.1189 13 6 2.0399 -0.7213 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1258 -0.6265 3.6671 16 1 3.0896 -1.0976 3.4737 17 6 1.1141 -1.6918 4.0944 18 6 2.2788 0.4084 4.7836 19 7 3.1698 1.4861 4.3335 20 6 4.5721 1.0505 4.3485 21 6 5.4536 2.1428 3.7387 22 6 5.2917 3.4330 4.5472 23 6 6.1251 4.5453 3.9075 24 6 3.8153 3.8386 4.5562 25 6 2.9813 2.6972 5.1423 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9236 -1.8418 -4.7318 32 1 3.1263 -0.7995 1.2056 33 1 1.6053 -1.7198 1.2951 34 1 0.6528 0.1793 2.4753 35 1 0.1503 -1.2207 4.2877 36 1 1.0051 -2.4291 3.2990 37 1 1.4663 -2.1847 5.0005 38 1 2.7038 -0.0695 5.6662 39 1 1.3018 0.8239 5.0302 40 1 4.6741 0.1345 3.7666 41 1 4.8833 0.8642 5.3764 42 1 5.1517 2.3200 2.7064 43 1 6.4963 1.8259 3.7638 44 1 5.6301 3.2669 5.5700 45 1 5.7861 4.7107 2.8848 46 1 6.0075 5.4638 4.4823 47 1 7.1752 4.2536 3.8993 48 1 3.6873 4.7331 5.1660 49 1 3.4877 4.0424 3.5369 50 1 1.9279 2.9771 5.1369 51 1 3.3003 2.5032 6.1664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:49 Heat of formation + Delta-G solvation = -32.591071 kcal Electronic energy + Delta-G solvation = -23348.418973 eV Core-core repulsion = 20281.004698 eV Total energy + Delta-G solvation = -3067.414275 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.30766 -37.37237 -35.26286 -33.71022 -32.14951 -30.83762 -29.71802 -28.24549 -26.71398 -25.37577 -24.71102 -23.24338 -22.34098 -21.81348 -20.30204 -19.63923 -18.80886 -16.40681 -16.03679 -15.44119 -14.94651 -14.59755 -14.55947 -14.47988 -14.25522 -14.05319 -13.54365 -13.27699 -13.02084 -12.67345 -12.40083 -12.37062 -12.33070 -12.02945 -11.83983 -11.65902 -11.54605 -11.41870 -11.25571 -11.16113 -10.85285 -10.78085 -10.67697 -10.63089 -10.27927 -10.26415 -10.14214 -10.06015 -9.61254 -9.05121 -8.86851 -8.27218 -8.07849 -7.79261 -5.91936 -3.92379 3.35898 3.43371 3.47873 3.90870 4.49493 4.58491 4.70360 4.76875 4.77626 4.97780 5.20090 5.23529 5.30202 5.34057 5.41051 5.44044 5.44428 5.53749 5.57754 5.62278 5.66834 5.70090 5.79811 5.82542 5.85459 5.90318 5.95362 6.04729 6.06859 6.09539 6.14174 6.16701 6.20817 6.21261 6.40714 6.46530 6.59697 6.69211 7.08614 7.21042 7.22392 7.24809 7.29368 7.61947 7.78043 7.89909 7.97248 8.09568 8.54183 9.14521 9.70746 11.19706 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.003818 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.377733 B = 7331.770268 C = 8500.214070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.069 3.931 14 N -0.662 5.662 15 C 0.088 3.912 16 H 0.072 0.928 17 C -0.183 4.183 18 C 0.070 3.930 19 N -0.511 5.511 20 C 0.060 3.940 21 C -0.112 4.112 22 C -0.092 4.092 23 C -0.146 4.146 24 C -0.111 4.111 25 C 0.059 3.941 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.014 0.986 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.062 0.938 33 H 0.017 0.983 34 H 0.333 0.667 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 6.147 21.255 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.292 5.292 15 C -0.024 4.024 16 H 0.091 0.909 17 C -0.242 4.242 18 C -0.058 4.058 19 N -0.235 5.235 20 C -0.067 4.067 21 C -0.149 4.149 22 C -0.111 4.111 23 C -0.204 4.204 24 C -0.149 4.149 25 C -0.069 4.069 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.152 0.848 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.627 6.589 20.604 21.791 hybrid contribution -0.616 -0.652 -0.026 0.898 sum 2.010 5.937 20.578 21.511 Atomic orbital electron populations 1.21723 0.96913 1.00164 1.00149 1.21184 0.94624 1.00144 0.94138 0.91614 1.19109 0.96053 0.95269 0.90525 1.21297 1.34257 1.08191 0.91011 0.92543 1.25016 0.95415 0.95094 0.99056 1.69981 1.39346 1.21325 1.23143 0.86596 0.78233 0.80165 0.83382 1.19743 1.21125 1.21190 1.22098 0.99889 0.94126 0.89892 1.60516 1.18876 1.49508 1.00343 1.21521 0.97955 0.91815 0.91083 0.90948 1.22506 1.00008 1.00066 1.01651 1.22086 0.96701 0.92272 0.94759 1.61699 1.04525 1.03967 1.53295 1.22055 0.88109 0.98414 0.98166 1.21636 0.98440 0.94045 1.00826 1.21162 0.95469 0.95462 0.98989 1.21812 0.99509 0.97920 1.01112 1.21632 0.94191 0.96738 1.02289 1.22059 1.00028 0.91079 0.93721 0.94276 0.94958 0.92095 0.96774 0.96946 0.93248 0.91915 0.96505 0.84812 0.92583 0.92263 0.92679 0.95292 0.91314 0.90796 0.96062 0.90414 0.92067 0.92171 0.92301 0.93057 0.92935 0.92160 0.90609 0.91048 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 C 0.07 1.22 4.94 -3.83 -0.02 1.20 16 14 N -0.66 -9.82 5.99 -106.73 -0.64 -10.46 16 15 C 0.09 1.08 2.60 -67.71 -0.18 0.90 16 16 H 0.07 0.96 6.64 -51.93 -0.34 0.62 16 17 C -0.18 -1.97 9.16 37.16 0.34 -1.63 16 18 C 0.07 0.78 4.69 -3.82 -0.02 0.77 16 19 N -0.51 -6.14 4.32 -234.67 -1.01 -7.15 16 20 C 0.06 0.70 5.29 -3.83 -0.02 0.68 16 21 C -0.11 -1.24 5.38 -26.65 -0.14 -1.38 16 22 C -0.09 -0.90 2.79 -90.49 -0.25 -1.15 16 23 C -0.15 -1.32 9.21 37.16 0.34 -0.98 16 24 C -0.11 -1.12 5.38 -26.65 -0.14 -1.26 16 25 C 0.06 0.62 5.43 -3.83 -0.02 0.60 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 28 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 34 H 0.33 4.81 6.73 -39.29 -0.26 4.54 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.30 8.00 -51.93 -0.42 -0.12 16 39 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 40 H 0.07 0.92 6.79 -51.93 -0.35 0.56 16 41 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 51 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -29.60 385.03 -11.02 -40.62 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -10.36 Total: -0.06 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -0.53 Total: -19.10 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.92 Total: -44.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.60 -11.02 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.033 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds