Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46800 * 2 1 4 4 C 1.52995 * 109.47150 * 239.99333 * 2 1 3 5 5 N 1.46898 * 109.47214 * 63.80034 * 4 2 1 6 6 C 1.46846 * 111.00229 * 195.66809 * 5 4 2 7 7 C 1.53035 * 109.52368 * 174.15781 * 6 5 4 8 8 C 1.53123 * 109.27726 * 59.18026 * 7 6 5 9 9 C 1.53001 * 109.52228 * 182.37694 * 8 7 6 10 10 C 1.53117 * 109.16269 * 302.34255 * 8 7 6 11 11 C 1.46847 * 111.00260 * 71.45555 * 5 4 2 12 12 N 1.46908 * 109.46626 * 119.99453 * 2 1 3 13 13 C 1.46896 * 111.00099 * 274.56544 * 12 2 1 14 14 C 1.52994 * 109.47350 * 180.02562 * 13 12 2 15 15 H 1.09006 * 109.47284 * 305.00544 * 14 13 12 16 16 C 1.52999 * 109.47273 * 64.99863 * 14 13 12 17 17 C 1.52999 * 109.47686 * 185.00345 * 14 13 12 18 18 C 1.50697 * 109.47555 * 175.00023 * 17 14 13 19 19 H 1.07999 * 119.99677 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99987 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99541 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47016 * 90.00355 * 22 20 18 24 24 H 1.48501 * 109.46970 * 209.99832 * 22 20 18 25 25 H 1.48503 * 109.47284 * 330.00066 * 22 20 18 26 26 H 1.09000 * 109.47375 * 300.00300 * 1 2 3 27 27 H 1.08996 * 109.46675 * 60.00397 * 1 2 3 28 28 H 1.08996 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47207 * 303.79571 * 4 2 1 30 30 H 1.09005 * 109.46742 * 183.79780 * 4 2 1 31 31 H 1.08998 * 109.45908 * 54.14493 * 6 5 4 32 32 H 1.08997 * 109.45288 * 294.16997 * 6 5 4 33 33 H 1.08998 * 109.50473 * 299.23910 * 7 6 5 34 34 H 1.08999 * 109.53708 * 179.14409 * 7 6 5 35 35 H 1.08997 * 109.51897 * 62.25102 * 8 7 6 36 36 H 1.08997 * 109.47360 * 59.87401 * 9 8 7 37 37 H 1.08996 * 109.47324 * 179.87959 * 9 8 7 38 38 H 1.09003 * 109.47298 * 299.87433 * 9 8 7 39 39 H 1.08995 * 109.50523 * 177.59460 * 10 8 7 40 40 H 1.08998 * 109.50682 * 297.71759 * 10 8 7 41 41 H 1.08998 * 109.46273 * 305.85976 * 11 5 4 42 42 H 1.09006 * 109.45752 * 65.83313 * 11 5 4 43 43 H 1.00902 * 110.99187 * 150.61354 * 12 2 1 44 44 H 1.08997 * 109.47252 * 300.00705 * 13 12 2 45 45 H 1.09003 * 109.47156 * 60.00430 * 13 12 2 46 46 H 1.09011 * 109.46866 * 59.99985 * 16 14 13 47 47 H 1.09000 * 109.47344 * 179.97438 * 16 14 13 48 48 H 1.08994 * 109.47294 * 300.00566 * 16 14 13 49 49 H 1.09007 * 109.46369 * 295.00224 * 17 14 13 50 50 H 1.08998 * 109.47228 * 54.99323 * 17 14 13 51 51 H 0.97005 * 119.99490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6268 0.0219 -2.4469 6 6 1.7635 -0.8050 -3.6527 7 6 1.1899 -0.0533 -4.8560 8 6 1.9431 1.2681 -5.0325 9 6 1.3352 2.0514 -6.1978 10 6 1.8256 2.0894 -3.7457 11 6 2.3807 1.2756 -2.5745 12 7 2.0196 -0.6924 1.1996 13 6 2.0922 0.2252 2.3444 14 6 2.6055 -0.5302 3.5718 15 1 1.9755 -1.4013 3.7522 16 6 4.0455 -0.9847 3.3256 17 6 2.5632 0.3913 4.7925 18 6 2.9517 -0.3869 6.0231 19 1 3.2032 -1.4341 5.9428 20 6 2.9860 0.2381 7.2517 21 7 3.3256 -0.4409 8.3255 22 14 2.5518 2.0496 7.3904 23 1 1.0942 2.1917 7.6367 24 1 3.3055 2.6543 8.5180 25 1 2.9103 2.7428 6.1270 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6223 -1.7275 -1.2837 30 1 3.1280 -0.7807 -1.2157 31 1 1.2199 -1.7397 -3.5155 32 1 2.8176 -1.0201 -3.8277 33 1 0.1324 0.1502 -4.6876 34 1 1.3050 -0.6606 -5.7538 35 1 2.9935 1.0637 -5.2396 36 1 0.2849 2.2553 -5.9899 37 1 1.8705 2.9927 -6.3214 38 1 1.4172 1.4641 -7.1124 39 1 2.3955 3.0126 -3.8498 40 1 0.7781 2.3267 -3.5597 41 1 2.2854 1.8520 -1.6543 42 1 3.4319 1.0504 -2.7548 43 1 2.9140 -1.1264 1.0268 44 1 2.7727 1.0440 2.1112 45 1 1.0999 0.6256 2.5525 46 1 4.6756 -0.1137 3.1452 47 1 4.4114 -1.5225 4.2002 48 1 4.0757 -1.6412 2.4560 49 1 3.2609 1.2164 4.6490 50 1 1.5545 0.7856 4.9153 51 1 3.3494 -0.0013 9.1899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -30.779776 kcal Electronic energy + Delta-G solvation = -22825.860088 eV Core-core repulsion = 19758.524356 eV Total energy + Delta-G solvation = -3067.335732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64501 -37.53572 -35.54702 -33.85672 -32.16399 -31.15728 -29.95981 -28.34341 -27.26269 -26.01221 -24.62933 -23.54576 -22.37618 -21.69999 -20.20366 -19.92851 -18.92553 -16.82377 -16.36793 -15.83690 -15.34326 -14.95042 -14.72481 -14.52883 -14.32396 -14.00398 -13.90854 -13.62782 -13.13188 -12.68675 -12.65818 -12.49542 -12.49164 -12.22483 -12.13584 -11.85006 -11.72925 -11.50689 -11.46229 -11.25048 -11.01324 -10.98250 -10.84344 -10.65706 -10.58310 -10.38067 -10.32657 -9.86905 -9.63573 -9.39808 -9.02632 -8.53221 -8.49055 -8.16160 -5.99553 -3.96195 3.33520 3.40679 3.44476 3.55230 4.38607 4.43929 4.47934 4.49210 4.56146 4.77721 4.97313 4.99079 5.08112 5.10718 5.22676 5.30445 5.32869 5.34106 5.36962 5.39083 5.57091 5.58304 5.64414 5.67826 5.69936 5.76779 5.80204 5.83578 5.86386 5.87909 5.97439 6.05955 6.11492 6.13235 6.23585 6.41807 6.43892 6.53831 6.79626 6.86732 6.87921 7.00652 7.08450 7.31684 7.35042 7.53226 7.66279 7.85704 8.60237 9.06313 9.63519 11.13892 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002663 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.614673 B =10510.702961 C =10840.449595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.039 0.961 4 C 0.056 3.944 5 N -0.531 5.531 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.095 4.095 9 C -0.146 4.146 10 C -0.111 4.111 11 C 0.052 3.948 12 N -0.685 5.685 13 C 0.065 3.935 14 C -0.075 4.075 15 H 0.071 0.929 16 C -0.135 4.135 17 C -0.009 4.009 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.336 0.664 44 H 0.021 0.979 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.068 0.932 48 H 0.033 0.967 49 H 0.013 0.987 50 H 0.011 0.989 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 3.113 -28.948 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.057 0.943 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.072 4.072 7 C -0.148 4.148 8 C -0.114 4.114 9 C -0.203 4.203 10 C -0.148 4.148 11 C -0.076 4.076 12 N -0.318 5.318 13 C -0.064 4.064 14 C -0.094 4.094 15 H 0.090 0.910 16 C -0.192 4.192 17 C -0.046 4.046 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.137 4.137 21 N -0.545 5.545 22 Si 0.706 3.294 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.155 0.845 44 H 0.039 0.961 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.052 0.948 49 H 0.031 0.969 50 H 0.029 0.971 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.240 3.009 -28.539 29.008 hybrid contribution 1.511 1.296 -0.004 1.991 sum -2.730 4.305 -28.543 28.994 Atomic orbital electron populations 1.21642 0.93959 1.01938 1.00937 1.21475 0.96882 0.95511 0.88425 0.94296 1.22262 0.97401 0.98006 0.89601 1.61818 1.56495 1.05140 1.02186 1.22082 0.98919 0.96254 0.89917 1.21642 1.00671 0.95708 0.96812 1.21190 0.99592 0.95469 0.95100 1.21807 1.01008 0.99845 0.97649 1.21639 1.02161 0.97565 0.93476 1.22156 0.94778 0.91451 0.99231 1.60621 1.33483 1.33466 1.04240 1.22178 1.00132 0.93377 0.90703 1.21026 0.95942 0.99185 0.93274 0.91028 1.21744 0.96916 0.99951 1.00636 1.19602 0.96089 0.95340 0.93618 1.21137 1.45427 0.98173 0.90234 0.90827 1.25036 0.94907 0.97851 0.95874 1.69919 1.49227 1.36439 0.98898 0.86801 0.78672 0.86192 0.77727 1.20353 1.21532 1.19138 0.93410 0.91946 0.92598 0.89970 0.95108 0.90650 0.95178 0.90978 0.91716 0.91736 0.92542 0.92805 0.92828 0.91712 0.90971 0.90508 0.95165 0.84481 0.96074 0.91463 0.94183 0.91343 0.94756 0.96879 0.97121 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.30 37.16 0.35 -1.22 16 2 C 0.09 1.07 2.69 -67.71 -0.18 0.89 16 3 H 0.04 0.51 6.16 -51.93 -0.32 0.19 16 4 C 0.06 0.58 4.40 -3.83 -0.02 0.57 16 5 N -0.53 -5.06 4.02 -234.67 -0.94 -6.01 16 6 C 0.06 0.46 5.44 -3.84 -0.02 0.44 16 7 C -0.11 -0.78 5.38 -26.65 -0.14 -0.93 16 8 C -0.09 -0.66 2.79 -90.50 -0.25 -0.91 16 9 C -0.15 -0.87 9.20 37.16 0.34 -0.53 16 10 C -0.11 -0.86 5.38 -26.65 -0.14 -1.00 16 11 C 0.05 0.47 5.30 -3.83 -0.02 0.45 16 12 N -0.69 -9.82 6.31 -106.73 -0.67 -10.49 16 13 C 0.06 1.09 4.94 -3.83 -0.02 1.07 16 14 C -0.08 -1.50 2.54 -90.62 -0.23 -1.73 16 15 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 16 C -0.14 -2.50 8.77 37.16 0.33 -2.18 16 17 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 18 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 19 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 20 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 22 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 26 H 0.05 0.63 7.48 -51.93 -0.39 0.24 16 27 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 30 H 0.03 0.33 7.97 -51.93 -0.41 -0.09 16 31 H 0.08 0.60 7.96 -51.93 -0.41 0.18 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.76 6.42 -51.93 -0.33 0.43 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.34 4.57 6.54 -39.29 -0.26 4.32 16 44 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 45 H 0.07 1.16 7.47 -51.93 -0.39 0.77 16 46 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.07 1.43 6.95 -51.93 -0.36 1.06 16 48 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 49 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 50 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 51 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -29.71 380.09 -10.56 -40.27 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -10.26 Total: -0.98 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.52 Total: -18.50 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.84 Total: -43.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.71 -10.56 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.493 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds