Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46800 * 2 1 4 4 C 1.52995 * 109.47150 * 239.99333 * 2 1 3 5 5 N 1.46898 * 109.47214 * 63.80034 * 4 2 1 6 6 C 1.46846 * 111.00229 * 195.66809 * 5 4 2 7 7 C 1.53035 * 109.52368 * 174.15781 * 6 5 4 8 8 C 1.53123 * 109.27726 * 59.18026 * 7 6 5 9 9 C 1.53001 * 109.52228 * 182.37694 * 8 7 6 10 10 C 1.53117 * 109.16269 * 302.34255 * 8 7 6 11 11 C 1.46847 * 111.00260 * 71.45555 * 5 4 2 12 12 N 1.46908 * 109.46626 * 119.99453 * 2 1 3 13 13 C 1.46896 * 111.00099 * 274.56544 * 12 2 1 14 14 C 1.52994 * 109.47350 * 180.02562 * 13 12 2 15 15 H 1.09006 * 109.47284 * 305.00544 * 14 13 12 16 16 C 1.52999 * 109.47273 * 64.99863 * 14 13 12 17 17 C 1.52999 * 109.47686 * 185.00345 * 14 13 12 18 18 C 1.50697 * 109.47555 * 175.00023 * 17 14 13 19 19 H 1.07999 * 119.99677 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99987 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99541 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99909 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47016 * 90.00355 * 22 20 18 24 24 H 1.48501 * 109.46970 * 209.99832 * 22 20 18 25 25 H 1.48503 * 109.47284 * 330.00066 * 22 20 18 26 26 H 1.09000 * 109.47375 * 300.00300 * 1 2 3 27 27 H 1.08996 * 109.46675 * 60.00397 * 1 2 3 28 28 H 1.08996 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47207 * 303.79571 * 4 2 1 30 30 H 1.09005 * 109.46742 * 183.79780 * 4 2 1 31 31 H 1.08998 * 109.45908 * 54.14493 * 6 5 4 32 32 H 1.08997 * 109.45288 * 294.16997 * 6 5 4 33 33 H 1.08998 * 109.50473 * 299.23910 * 7 6 5 34 34 H 1.08999 * 109.53708 * 179.14409 * 7 6 5 35 35 H 1.08997 * 109.51897 * 62.25102 * 8 7 6 36 36 H 1.08997 * 109.47360 * 59.87401 * 9 8 7 37 37 H 1.08996 * 109.47324 * 179.87959 * 9 8 7 38 38 H 1.09003 * 109.47298 * 299.87433 * 9 8 7 39 39 H 1.08995 * 109.50523 * 177.59460 * 10 8 7 40 40 H 1.08998 * 109.50682 * 297.71759 * 10 8 7 41 41 H 1.08998 * 109.46273 * 305.85976 * 11 5 4 42 42 H 1.09006 * 109.45752 * 65.83313 * 11 5 4 43 43 H 1.00902 * 110.99187 * 150.61354 * 12 2 1 44 44 H 1.08997 * 109.47252 * 300.00705 * 13 12 2 45 45 H 1.09003 * 109.47156 * 60.00430 * 13 12 2 46 46 H 1.09011 * 109.46866 * 59.99985 * 16 14 13 47 47 H 1.09000 * 109.47344 * 179.97438 * 16 14 13 48 48 H 1.08994 * 109.47294 * 300.00566 * 16 14 13 49 49 H 1.09007 * 109.46369 * 295.00224 * 17 14 13 50 50 H 1.08998 * 109.47228 * 54.99323 * 17 14 13 51 51 H 0.97005 * 119.99490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6268 0.0219 -2.4469 6 6 1.7635 -0.8050 -3.6527 7 6 1.1899 -0.0533 -4.8560 8 6 1.9431 1.2681 -5.0325 9 6 1.3352 2.0514 -6.1978 10 6 1.8256 2.0894 -3.7457 11 6 2.3807 1.2756 -2.5745 12 7 2.0196 -0.6924 1.1996 13 6 2.0922 0.2252 2.3444 14 6 2.6055 -0.5302 3.5718 15 1 1.9755 -1.4013 3.7522 16 6 4.0455 -0.9847 3.3256 17 6 2.5632 0.3913 4.7925 18 6 2.9517 -0.3869 6.0231 19 1 3.2032 -1.4341 5.9428 20 6 2.9860 0.2381 7.2517 21 7 3.3256 -0.4409 8.3255 22 14 2.5518 2.0496 7.3904 23 1 1.0942 2.1917 7.6367 24 1 3.3055 2.6543 8.5180 25 1 2.9103 2.7428 6.1270 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6223 -1.7275 -1.2837 30 1 3.1280 -0.7807 -1.2157 31 1 1.2199 -1.7397 -3.5155 32 1 2.8176 -1.0201 -3.8277 33 1 0.1324 0.1502 -4.6876 34 1 1.3050 -0.6606 -5.7538 35 1 2.9935 1.0637 -5.2396 36 1 0.2849 2.2553 -5.9899 37 1 1.8705 2.9927 -6.3214 38 1 1.4172 1.4641 -7.1124 39 1 2.3955 3.0126 -3.8498 40 1 0.7781 2.3267 -3.5597 41 1 2.2854 1.8520 -1.6543 42 1 3.4319 1.0504 -2.7548 43 1 2.9140 -1.1264 1.0268 44 1 2.7727 1.0440 2.1112 45 1 1.0999 0.6256 2.5525 46 1 4.6756 -0.1137 3.1452 47 1 4.4114 -1.5225 4.2002 48 1 4.0757 -1.6412 2.4560 49 1 3.2609 1.2164 4.6490 50 1 1.5545 0.7856 4.9153 51 1 3.3494 -0.0013 9.1899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602714701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -48.473966 kcal Electronic energy + Delta-G solvation = -22826.627366 eV Core-core repulsion = 19758.524356 eV Total energy + Delta-G solvation = -3068.103009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36595 -38.72787 -36.76086 -35.07161 -34.04722 -31.80565 -31.19968 -29.28413 -28.87344 -27.19149 -25.78978 -24.20216 -23.84045 -22.69027 -21.21558 -20.57729 -20.50090 -18.94935 -17.21743 -16.95935 -16.39031 -16.15408 -15.76854 -15.56340 -15.28396 -15.04228 -14.91873 -14.81055 -14.64920 -14.13420 -13.74512 -13.56779 -13.47325 -13.28919 -13.25101 -12.92865 -12.79725 -12.68837 -12.46677 -12.42802 -12.18739 -12.11584 -12.01523 -11.85757 -11.72613 -11.51840 -11.42798 -11.25904 -11.13588 -11.08261 -10.92927 -10.73448 -9.33493 -9.25950 -8.26043 -6.28169 1.35838 1.36984 1.48911 2.37582 2.75145 3.09028 3.43544 3.78153 3.88402 3.89579 3.96682 4.07470 4.19875 4.28910 4.32168 4.39405 4.41214 4.44272 4.52711 4.60874 4.71439 4.72651 4.76197 4.81754 4.83252 4.87490 4.90885 4.94991 4.99537 5.02463 5.03733 5.12732 5.15990 5.17146 5.23999 5.29592 5.30255 5.35838 5.37202 5.49019 5.55030 5.56596 5.70736 5.73050 6.07477 6.16563 6.20537 6.35227 6.53625 6.79247 7.35169 8.90656 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002663 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.614673 B =10510.702961 C =10840.449595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.090 3.910 3 H 0.037 0.963 4 C 0.063 3.937 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.107 4.107 8 C -0.093 4.093 9 C -0.143 4.143 10 C -0.107 4.107 11 C 0.052 3.948 12 N -0.688 5.688 13 C 0.079 3.921 14 C -0.071 4.071 15 H 0.053 0.947 16 C -0.128 4.128 17 C -0.006 4.006 18 C -0.517 4.517 19 H 0.035 0.965 20 C 0.000 4.000 21 N -0.953 5.953 22 Si 0.948 3.052 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.248 1.248 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.342 0.658 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.017 0.983 50 H 0.014 0.986 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 4.617 -31.401 31.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.019 4.019 3 H 0.055 0.945 4 C -0.065 4.065 5 N -0.261 5.261 6 C -0.073 4.073 7 C -0.144 4.144 8 C -0.112 4.112 9 C -0.200 4.200 10 C -0.145 4.145 11 C -0.076 4.076 12 N -0.321 5.321 13 C -0.050 4.050 14 C -0.090 4.090 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.044 4.044 18 C -0.556 4.556 19 H 0.053 0.947 20 C -0.196 4.196 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.171 1.171 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.162 0.838 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.035 0.965 50 H 0.032 0.968 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.591 4.506 -31.025 31.685 hybrid contribution 1.630 0.722 0.740 1.930 sum -2.960 5.228 -30.285 30.875 Atomic orbital electron populations 1.21579 0.93960 1.01563 1.00726 1.21468 0.96736 0.95426 0.88298 0.94493 1.22121 0.97336 0.97788 0.89264 1.61821 1.56572 1.05390 1.02346 1.22138 0.99058 0.96355 0.89709 1.21622 1.00168 0.95861 0.96792 1.21179 0.99602 0.95391 0.95030 1.21776 1.00838 0.99951 0.97451 1.21616 1.01743 0.97794 0.93358 1.22161 0.94720 0.91327 0.99406 1.60543 1.33937 1.33194 1.04463 1.21887 0.99786 0.93264 0.90090 1.20884 0.96722 0.98018 0.93344 0.92871 1.21655 0.95916 1.00498 1.00509 1.19559 0.95911 0.95576 0.93385 1.21445 1.44745 0.97036 0.92333 0.94669 1.26010 0.94957 1.03215 0.95439 1.70076 1.50970 1.38770 0.99647 0.85688 0.78750 0.79862 0.78504 1.19368 1.21123 1.17121 0.94564 0.91153 0.93014 0.89940 0.94984 0.90379 0.95191 0.91545 0.90458 0.91825 0.92681 0.92499 0.92159 0.91003 0.91580 0.91384 0.95372 0.83845 0.95373 0.91846 0.93366 0.94593 0.91608 0.96459 0.96814 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.30 71.98 0.67 -2.11 16 2 C 0.09 2.06 2.69 44.91 0.12 2.18 16 3 H 0.04 0.88 6.16 -2.39 -0.01 0.87 16 4 C 0.06 1.21 4.40 86.30 0.38 1.59 16 5 N -0.54 -9.26 4.02 -896.37 -3.60 -12.86 16 6 C 0.06 0.80 5.44 86.32 0.47 1.27 16 7 C -0.11 -1.30 5.38 30.65 0.16 -1.13 16 8 C -0.09 -1.11 2.79 -10.71 -0.03 -1.14 16 9 C -0.14 -1.41 9.20 71.98 0.66 -0.75 16 10 C -0.11 -1.48 5.38 30.65 0.16 -1.31 16 11 C 0.05 0.86 5.30 86.33 0.46 1.32 16 12 N -0.69 -18.47 6.31 -491.57 -3.10 -21.57 16 13 C 0.08 2.51 4.94 86.30 0.43 2.94 16 14 C -0.07 -2.78 2.54 -10.80 -0.03 -2.81 16 15 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 16 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 17 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 18 C -0.52 -30.17 8.96 25.60 0.23 -29.94 16 19 H 0.04 2.26 7.30 -2.91 -0.02 2.23 16 20 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 21 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 22 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 H 0.04 0.91 7.48 -2.39 -0.02 0.89 16 27 H 0.07 1.51 7.71 -2.39 -0.02 1.49 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.58 7.88 -2.39 -0.02 1.56 16 30 H 0.03 0.61 7.97 -2.38 -0.02 0.59 16 31 H 0.08 1.09 7.96 -2.39 -0.02 1.07 16 32 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.24 6.42 -2.39 -0.02 1.23 16 42 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.34 8.53 6.54 -89.69 -0.59 7.94 16 44 H 0.03 0.86 8.05 -2.39 -0.02 0.85 16 45 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 46 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.03 1.52 6.95 -2.39 -0.02 1.50 16 48 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 49 H 0.02 0.80 7.20 -2.38 -0.02 0.79 16 50 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 51 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -64.38 380.09 0.58 -63.80 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.21 Total: 17.78 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.89 Total: -33.70 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -6.40 Total: -94.97 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -64.38 0.58 -63.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.330 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds