Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46939 * 2 1 4 4 C 1.42901 * 113.99947 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47186 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46974 * 59.83721 * 5 4 3 7 7 C 1.46965 * 110.99888 * 76.53919 * 6 5 4 8 8 C 1.53052 * 109.36577 * 183.18848 * 7 6 5 9 9 N 1.46958 * 109.36089 * 301.59768 * 8 7 6 10 10 C 1.46898 * 110.99834 * 183.19200 * 9 8 7 11 11 C 1.53001 * 109.47572 * 161.70626 * 10 9 8 12 12 C 1.50705 * 115.54443 * 60.49544 * 11 10 9 13 13 H 1.08001 * 119.99530 * 232.66245 * 12 11 10 14 14 C 1.37869 * 120.00132 * 52.66545 * 12 11 10 15 15 N 1.31520 * 120.00062 * 5.75672 * 14 12 11 16 16 Si 1.86804 * 120.00145 * 186.03325 * 14 12 11 17 17 H 1.48501 * 109.47095 * 89.99795 * 16 14 12 18 18 H 1.48489 * 109.47313 * 210.00070 * 16 14 12 19 19 H 1.48498 * 109.46799 * 330.00067 * 16 14 12 20 20 C 1.52992 * 117.50175 * 206.16540 * 11 10 9 21 21 C 1.52997 * 117.50014 * 274.83205 * 11 10 9 22 22 C 1.46951 * 110.88165 * 59.32277 * 9 8 7 23 23 C 1.46956 * 111.00205 * 200.33302 * 6 5 4 24 24 H 1.09004 * 109.47068 * 60.00192 * 1 2 3 25 25 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47373 * 299.99855 * 1 2 3 27 27 H 1.09001 * 109.47373 * 240.00145 * 2 1 3 28 28 H 1.08996 * 109.46858 * 119.99689 * 2 1 3 29 29 H 1.09000 * 109.47208 * 60.00198 * 4 3 2 30 30 H 1.09003 * 109.46997 * 299.99808 * 4 3 2 31 31 H 1.09003 * 109.47297 * 299.84353 * 5 4 3 32 32 H 1.08991 * 109.47358 * 179.83922 * 5 4 3 33 33 H 1.09001 * 109.48797 * 63.21624 * 7 6 5 34 34 H 1.08999 * 109.48825 * 303.15531 * 7 6 5 35 35 H 1.09000 * 109.48786 * 181.63377 * 8 7 6 36 36 H 1.08996 * 109.50604 * 61.57591 * 8 7 6 37 37 H 1.09001 * 109.47632 * 41.70375 * 10 9 8 38 38 H 1.09005 * 109.47270 * 281.70765 * 10 9 8 39 39 H 0.97000 * 120.00093 * 184.97812 * 15 14 12 40 40 H 1.09003 * 117.50097 * 215.00183 * 20 11 10 41 41 H 1.09003 * 117.50142 * 0.02562 * 20 11 10 42 42 H 1.09007 * 117.49952 * 359.96413 * 21 11 10 43 43 H 1.08992 * 117.50298 * 144.97016 * 21 11 10 44 44 H 1.09001 * 109.48884 * 60.64707 * 22 9 8 45 45 H 1.09006 * 109.48761 * 180.71278 * 22 9 8 46 46 H 1.08999 * 109.49137 * 296.78436 * 23 6 5 47 47 H 1.09002 * 109.48434 * 56.82687 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 7 3.2787 3.5917 1.1967 7 6 4.0677 3.2517 2.3891 8 6 3.4211 3.8854 3.6231 9 7 3.3480 5.3418 3.4412 10 6 2.8015 5.9951 4.6380 11 6 3.1526 7.4840 4.6118 12 6 2.6155 8.2577 3.4353 13 1 3.2830 8.8549 2.8318 14 6 1.2723 8.2032 3.1296 15 7 0.4413 7.5695 3.9281 16 14 0.6336 9.0229 1.5773 17 1 0.6748 8.0538 0.4529 18 1 -0.7655 9.4708 1.7937 19 1 1.4840 10.1958 1.2512 20 6 3.2433 8.2122 5.9543 21 6 4.5173 7.8979 5.1659 22 6 2.5590 5.6818 2.2490 23 6 3.2056 5.0481 1.0149 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8332 0.9768 0.8909 31 1 3.4253 3.4209 -0.8920 32 1 4.9118 3.0246 0.0032 33 1 5.0826 3.6324 2.2742 34 1 4.0966 2.1688 2.5093 35 1 4.0208 3.6587 4.5047 36 1 2.4161 3.4843 3.7539 37 1 3.2292 5.5366 5.5297 38 1 1.7179 5.8775 4.6534 39 1 -0.4904 7.4688 3.6776 40 1 2.9146 9.2510 5.9866 41 1 3.0533 7.6305 6.8563 42 1 5.1649 7.1095 5.5498 43 1 5.0269 8.7295 4.6795 44 1 1.5441 5.3011 2.3638 45 1 2.5302 6.7648 2.1287 46 1 4.2107 5.4492 0.8845 47 1 2.6063 5.2748 0.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602774087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -2.503322 kcal Electronic energy + Delta-G solvation = -23773.928824 eV Core-core repulsion = 20571.986156 eV Total energy + Delta-G solvation = -3201.942667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.90598 -37.80344 -36.52185 -34.15253 -32.22715 -31.53389 -30.13427 -29.22513 -26.26841 -25.69178 -23.24541 -22.79074 -22.67246 -21.22955 -20.99811 -19.03470 -18.89998 -16.69639 -16.40744 -16.01169 -15.19926 -14.80503 -14.64684 -14.45688 -14.10129 -13.99339 -13.58394 -13.48411 -13.12840 -12.88549 -12.62988 -12.44540 -11.90855 -11.70179 -11.63602 -11.36440 -11.26234 -11.07920 -10.97048 -10.80630 -10.69268 -10.48554 -10.38911 -10.14011 -9.99800 -9.79355 -9.50122 -9.26258 -8.82387 -8.48219 -7.96782 -7.87231 -7.12235 -6.03346 -4.01344 3.28132 3.36867 3.38277 3.74052 4.26058 4.37272 4.86347 4.98352 5.01739 5.16187 5.17823 5.27821 5.30010 5.38943 5.51076 5.53127 5.64784 5.70244 5.74356 5.84273 5.85730 5.91492 6.06509 6.09783 6.15976 6.18391 6.25830 6.40895 6.49177 6.52681 6.71992 6.83168 6.85250 6.98402 7.07667 7.25946 7.28859 7.39506 7.46918 7.52328 7.56958 7.62593 7.90553 8.28991 8.33587 8.52439 8.91345 9.50281 11.00369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.005025 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.779769 B = 5570.455259 C = 6287.230766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.071 3.929 5 C 0.055 3.945 6 N -0.529 5.529 7 C 0.064 3.936 8 C 0.055 3.945 9 N -0.523 5.523 10 C 0.096 3.904 11 C 0.064 3.936 12 C -0.477 4.477 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.874 5.874 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.194 4.194 21 C -0.200 4.200 22 C 0.043 3.957 23 C 0.058 3.942 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.137 0.863 46 H 0.034 0.966 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -13.076 -6.374 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.286 6.286 4 C -0.006 4.006 5 C -0.074 4.074 6 N -0.254 5.254 7 C -0.065 4.065 8 C -0.074 4.074 9 N -0.247 5.247 10 C -0.032 4.032 11 C 0.063 3.937 12 C -0.515 4.515 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.232 4.232 21 C -0.238 4.238 22 C -0.084 4.084 23 C -0.070 4.070 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.154 0.846 46 H 0.052 0.948 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.906 -12.911 -6.319 14.896 hybrid contribution -0.190 -0.007 -0.731 0.755 sum 3.716 -12.918 -7.050 15.178 Atomic orbital electron populations 1.21714 0.93935 1.01710 1.03379 1.22400 0.95652 0.84708 0.99277 1.88067 1.20468 1.24908 1.95134 1.22484 0.82073 0.96909 0.99119 1.22104 0.96981 0.93531 0.94775 1.62145 1.51398 1.09964 1.01907 1.22123 0.94932 0.98673 0.90728 1.22081 0.98821 0.90536 0.95944 1.62029 1.53210 1.04953 1.04541 1.21567 0.99578 0.93479 0.88528 1.18767 0.92127 0.91050 0.91767 1.20444 0.92317 1.27381 1.11324 0.92152 1.24933 0.96498 0.95314 0.96377 1.69940 1.04304 1.41981 1.34892 0.86854 0.78517 0.80274 0.84163 1.19969 1.21132 1.19690 1.22848 1.02519 1.00987 0.96884 1.22774 0.91718 1.02247 1.07012 1.22904 0.93212 1.05132 0.87119 1.22344 0.99520 0.85531 0.99600 0.92008 0.91575 0.91597 0.94173 0.93886 0.93742 0.93705 0.90465 0.93501 0.94678 0.91799 0.91800 0.95175 0.95125 0.91186 0.92892 0.90581 0.92088 0.91651 0.91045 0.95488 0.84581 0.94758 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.37 -5.34 10.20 -35.23 -0.36 -5.70 16 4 C 0.07 0.88 6.10 37.16 0.23 1.10 16 5 C 0.05 0.75 5.42 -3.82 -0.02 0.73 16 6 N -0.53 -9.03 4.50 -234.46 -1.05 -10.08 16 7 C 0.06 1.03 5.43 -3.76 -0.02 1.01 16 8 C 0.06 1.03 5.57 -3.77 -0.02 1.01 16 9 N -0.52 -11.31 4.65 -234.46 -1.09 -12.40 16 10 C 0.10 2.25 4.76 -3.82 -0.02 2.23 16 11 C 0.06 1.56 1.77 -155.66 -0.28 1.28 16 12 C -0.48 -12.49 6.48 -34.44 -0.22 -12.71 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.87 3.65 -17.82 -0.07 1.81 16 15 N -0.87 -23.77 11.46 55.43 0.64 -23.13 16 16 Si 0.88 20.37 29.05 -169.99 -4.94 15.43 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.19 -4.50 9.95 -26.69 -0.27 -4.77 16 21 C -0.20 -4.46 9.95 -26.69 -0.27 -4.72 16 22 C 0.04 0.97 4.70 -3.77 -0.02 0.95 16 23 C 0.06 1.09 5.56 -3.77 -0.02 1.07 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.53 6.93 -51.93 -0.36 0.17 16 31 H 0.08 1.05 7.83 -51.93 -0.41 0.65 16 32 H 0.05 0.58 7.98 -51.93 -0.41 0.16 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.91 6.84 -51.93 -0.36 0.56 16 35 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.68 7.84 -51.93 -0.41 0.27 16 38 H 0.07 1.84 6.19 -51.93 -0.32 1.52 16 39 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.14 3.35 3.23 -51.93 -0.17 3.19 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -27.78 360.42 -10.46 -38.24 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.73 Total: 3.51 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.36 Total: -11.29 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -1.51 Total: -45.62 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.36 Total: -5.70 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.94 Total: 15.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.78 -10.46 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602774087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.736 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds