Wall clock time and date at job start Tue Mar 31 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46830 * 2 1 4 4 N 1.46905 * 109.46834 * 181.46454 * 3 2 1 5 5 C 1.46895 * 110.99856 * 198.58244 * 4 3 2 6 6 C 1.52999 * 109.47070 * 66.04998 * 5 4 3 7 7 N 1.46902 * 109.47390 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99553 * 66.04577 * 7 6 5 9 9 C 1.52999 * 109.47133 * 65.35381 * 8 7 6 10 10 C 1.46893 * 110.99996 * 190.00128 * 7 6 5 11 11 C 1.53005 * 109.47138 * 173.49234 * 10 7 6 12 12 C 1.46902 * 110.99418 * 74.63412 * 4 3 2 13 13 C 1.53006 * 109.46852 * 188.70713 * 12 4 3 14 14 C 1.50700 * 115.54692 * 53.84978 * 13 12 4 15 15 H 1.08001 * 119.99909 * 215.12896 * 14 13 12 16 16 C 1.37874 * 120.00322 * 34.85370 * 14 13 12 17 17 N 1.31515 * 120.00034 * 0.94022 * 16 14 13 18 18 Si 1.86803 * 120.00375 * 180.94242 * 16 14 13 19 19 H 1.48493 * 109.47094 * 89.99497 * 18 16 14 20 20 H 1.48499 * 109.47132 * 210.00298 * 18 16 14 21 21 H 1.48506 * 109.46688 * 329.99784 * 18 16 14 22 22 C 1.53001 * 117.50024 * 199.51838 * 13 12 4 23 23 C 1.52996 * 117.50226 * 268.17858 * 13 12 4 24 24 H 1.08998 * 109.47225 * 300.00152 * 1 2 3 25 25 H 1.08999 * 109.46946 * 60.00212 * 1 2 3 26 26 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47225 * 239.99848 * 2 1 3 28 28 H 1.08999 * 109.46946 * 119.99788 * 2 1 3 29 29 H 1.08997 * 109.47336 * 61.46689 * 3 2 1 30 30 H 1.09001 * 109.47120 * 301.46685 * 3 2 1 31 31 H 1.09001 * 109.47022 * 186.05033 * 5 4 3 32 32 H 1.09001 * 109.47866 * 306.04876 * 5 4 3 33 33 H 1.09001 * 109.47227 * 299.99910 * 6 5 4 34 34 H 1.09005 * 109.46809 * 59.99769 * 6 5 4 35 35 H 1.09005 * 109.46885 * 185.34786 * 8 7 6 36 36 H 1.08999 * 109.47420 * 305.34667 * 8 7 6 37 37 H 1.09001 * 109.47134 * 184.92460 * 9 8 7 38 38 H 1.09002 * 109.46883 * 304.91787 * 9 8 7 39 39 H 1.08997 * 109.47482 * 64.91825 * 9 8 7 40 40 H 1.09005 * 109.47520 * 293.49205 * 10 7 6 41 41 H 1.09006 * 109.47613 * 53.49266 * 10 7 6 42 42 H 1.09004 * 109.47204 * 185.51512 * 11 10 7 43 43 H 1.09004 * 109.46875 * 305.51484 * 11 10 7 44 44 H 1.09001 * 109.47042 * 65.51477 * 11 10 7 45 45 H 1.08997 * 109.47388 * 68.71219 * 12 4 3 46 46 H 1.09000 * 109.47263 * 308.70445 * 12 4 3 47 47 H 0.96996 * 120.00220 * 184.71173 * 17 16 14 48 48 H 1.08998 * 117.49422 * 215.00710 * 22 13 12 49 49 H 1.08995 * 117.49908 * 0.02562 * 22 13 12 50 50 H 1.09008 * 117.49720 * 359.97438 * 23 13 12 51 51 H 1.09001 * 117.50042 * 144.97014 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5086 1.4427 -0.0354 5 6 4.0455 2.7389 0.3999 6 6 3.7171 2.9564 1.8783 7 7 4.2545 4.2524 2.3138 8 6 3.5687 5.3610 1.6366 9 6 2.1018 5.3941 2.0702 10 6 4.1696 4.3938 3.7734 11 6 4.8821 5.6776 4.2038 12 6 4.0029 1.0906 -1.3732 13 6 5.5186 0.8886 -1.3200 14 6 6.0074 -0.0949 -0.2881 15 1 6.9442 0.0774 0.2209 16 6 5.2559 -1.2116 0.0104 17 7 4.1214 -1.4282 -0.6187 18 14 5.8489 -2.4170 1.3084 19 1 5.3221 -2.0129 2.6367 20 1 5.3627 -3.7804 0.9768 21 1 7.3335 -2.4159 1.3435 22 6 6.2888 0.9694 -2.6396 23 6 6.4037 2.1011 -1.6154 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6983 1.9487 0.9028 30 1 1.6553 1.9639 -0.8765 31 1 5.1268 2.7488 0.2626 32 1 3.5967 3.5358 -0.1931 33 1 2.6358 2.9464 2.0156 34 1 4.1660 2.1595 2.4712 35 1 4.0480 6.3026 1.9045 36 1 3.6255 5.2185 0.5575 37 1 1.5725 6.1600 1.5032 38 1 1.6453 4.4223 1.8821 39 1 2.0424 5.6235 3.1341 40 1 3.1228 4.4411 4.0737 41 1 4.6458 3.5368 4.2499 42 1 4.9047 5.7333 5.2922 43 1 5.9019 5.6736 3.8189 44 1 4.3473 6.5405 3.8068 45 1 3.7678 1.8945 -2.0707 46 1 3.5250 0.1692 -1.7063 47 1 3.5594 -2.1758 -0.3617 48 1 7.1490 0.3111 -2.7612 49 1 5.7158 1.1668 -3.5455 50 1 5.9062 3.0427 -1.8480 51 1 7.3394 2.1877 -1.0629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:05 Heat of formation + Delta-G solvation = 34.319667 kcal Electronic energy + Delta-G solvation = -24628.088635 eV Core-core repulsion = 21563.575827 eV Total energy + Delta-G solvation = -3064.512808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.68390 -37.36232 -35.27081 -32.57324 -31.88512 -31.20780 -30.12170 -27.03671 -26.11464 -25.16764 -24.20604 -23.11482 -21.34571 -20.79649 -19.99044 -19.14090 -18.77125 -16.37344 -15.92731 -15.65758 -14.68050 -14.56778 -14.36493 -14.14493 -13.79666 -13.62835 -13.15419 -12.92876 -12.85962 -12.55377 -12.46918 -12.08935 -11.87837 -11.82434 -11.44746 -11.32948 -11.19798 -11.10643 -10.90842 -10.82983 -10.60416 -10.51739 -10.42202 -10.32194 -10.30020 -10.11529 -9.80195 -9.62524 -9.17023 -8.76011 -8.47130 -7.96790 -7.94443 -6.98564 -5.75641 -3.81612 3.40340 3.46366 3.50123 4.10667 4.55375 4.92651 5.06770 5.13472 5.27985 5.32223 5.35608 5.46826 5.57794 5.61761 5.65780 5.70216 5.74926 5.77245 5.83351 5.90531 5.99853 6.04709 6.09351 6.12426 6.18768 6.21435 6.23464 6.34766 6.36484 6.44632 6.47627 6.56341 6.66959 6.71966 6.78574 6.84098 6.88947 7.03198 7.06860 7.33700 7.34876 7.37840 7.41723 7.45898 7.75149 8.15110 8.37745 8.41167 8.68255 9.11794 9.77916 11.21941 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.006146 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.844594 B = 4554.802330 C = 4963.122150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.062 3.938 4 N -0.493 5.493 5 C 0.063 3.937 6 C 0.058 3.942 7 N -0.533 5.533 8 C 0.045 3.955 9 C -0.192 4.192 10 C 0.048 3.952 11 C -0.147 4.147 12 C 0.108 3.892 13 C 0.068 3.932 14 C -0.470 4.470 15 H 0.051 0.949 16 C 0.090 3.910 17 N -0.869 5.869 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.211 4.211 23 C -0.217 4.217 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.006 0.994 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.050 0.950 45 H -0.023 1.023 46 H 0.122 0.878 47 H 0.255 0.745 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 9.978 4.767 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.066 4.066 4 N -0.215 5.215 5 C -0.065 4.065 6 C -0.069 4.069 7 N -0.257 5.257 8 C -0.083 4.083 9 C -0.250 4.250 10 C -0.080 4.080 11 C -0.205 4.205 12 C -0.019 4.019 13 C 0.067 3.933 14 C -0.507 4.507 15 H 0.070 0.930 16 C -0.113 4.113 17 N -0.506 5.506 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.250 4.250 23 C -0.254 4.254 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.112 0.888 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.069 0.931 45 H -0.006 1.006 46 H 0.140 0.860 47 H 0.065 0.935 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.083 9.446 4.924 11.802 hybrid contribution -0.875 0.109 0.387 0.963 sum -5.958 9.555 5.310 12.450 Atomic orbital electron populations 1.21809 0.98078 1.00624 1.00261 1.21478 0.92017 0.96733 1.04687 1.22054 0.89641 0.96854 0.98049 1.61580 1.04780 1.26868 1.28316 1.22067 1.02302 0.89549 0.92600 1.22191 0.96882 0.89872 0.97977 1.62186 1.55701 1.02583 1.05242 1.22201 0.91436 0.94926 0.99744 1.22409 0.99029 1.02179 1.01416 1.22069 0.98598 0.98783 0.88548 1.21792 1.01482 0.97044 1.00180 1.21829 0.95737 0.98967 0.85356 1.18982 0.89146 0.92514 0.92662 1.20258 1.05675 1.04188 1.20551 0.93042 1.24679 0.94730 0.96831 0.95071 1.69778 1.11709 1.29296 1.39835 0.86711 0.78775 0.80540 0.82500 1.20860 1.21677 1.20430 1.23001 1.04827 1.02603 0.94569 1.22932 1.03429 0.92917 1.06151 0.94032 0.93783 0.93331 0.89419 0.91796 0.93019 0.97164 0.88771 0.97554 0.95166 0.90028 0.91038 0.90577 0.92559 0.92306 0.92725 0.95024 0.90884 0.92747 0.91733 0.93070 1.00557 0.86017 0.93453 0.90604 0.92151 0.92016 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.11 -2.07 5.33 -26.73 -0.14 -2.21 16 3 C 0.06 1.17 4.85 -3.82 -0.02 1.15 16 4 N -0.49 -10.41 3.89 -234.62 -0.91 -11.32 16 5 C 0.06 1.22 4.67 -3.83 -0.02 1.20 16 6 C 0.06 1.00 4.77 -3.82 -0.02 0.98 16 7 N -0.53 -7.93 4.74 -234.62 -1.11 -9.05 16 8 C 0.05 0.59 5.55 -3.82 -0.02 0.57 16 9 C -0.19 -2.25 9.18 37.16 0.34 -1.91 16 10 C 0.05 0.62 5.34 -3.82 -0.02 0.60 16 11 C -0.15 -1.59 9.59 37.16 0.36 -1.23 16 12 C 0.11 2.49 3.75 -3.82 -0.01 2.48 16 13 C 0.07 1.64 1.42 -155.66 -0.22 1.42 16 14 C -0.47 -12.51 8.75 -34.44 -0.30 -12.81 16 15 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 16 C 0.09 2.35 5.25 -17.82 -0.09 2.25 16 17 N -0.87 -22.38 8.57 55.43 0.47 -21.90 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.21 -4.83 9.96 -26.69 -0.27 -5.10 16 23 C -0.22 -4.79 8.12 -26.70 -0.22 -5.01 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.83 5.74 -51.93 -0.30 1.54 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.05 0.90 5.89 -51.93 -0.31 0.60 16 30 H 0.01 0.19 8.02 -51.93 -0.42 -0.23 16 31 H 0.09 2.04 5.54 -51.93 -0.29 1.75 16 32 H 0.01 0.12 6.43 -51.93 -0.33 -0.21 16 33 H 0.03 0.50 4.22 -51.93 -0.22 0.28 16 34 H 0.08 1.56 7.98 -51.93 -0.41 1.14 16 35 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 36 H 0.08 1.08 6.24 -51.93 -0.32 0.75 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 39 H 0.05 0.60 6.60 -51.93 -0.34 0.26 16 40 H 0.03 0.39 6.25 -51.93 -0.32 0.07 16 41 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.52 6.78 -51.93 -0.35 0.16 16 45 H -0.02 -0.53 8.07 -51.93 -0.42 -0.95 16 46 H 0.12 3.05 4.50 -51.93 -0.23 2.81 16 47 H 0.25 6.41 8.32 -40.82 -0.34 6.07 16 48 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 49 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.06 1.29 8.11 -51.92 -0.42 0.86 16 51 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -25.63 373.18 -10.78 -36.41 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -9.54 Total: 3.71 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.29 Total: -19.50 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -1.55 Total: -42.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -25.63 -10.78 -36.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.728 kcal (2) G-P(sol) polarization free energy of solvation -25.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds