Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47068 * 2 1 4 4 C 1.46501 * 119.99898 * 269.99950 * 3 2 1 5 5 C 1.34771 * 120.00349 * 90.00066 * 3 2 1 6 6 O 1.21283 * 119.99906 * 5.16106 * 5 3 2 7 7 C 1.50708 * 120.00391 * 185.16123 * 5 3 2 8 8 H 1.08996 * 109.46602 * 24.53211 * 7 5 3 9 9 N 1.46901 * 109.46850 * 144.53119 * 7 5 3 10 10 C 1.46902 * 110.99662 * 204.56750 * 9 7 5 11 11 C 1.52996 * 109.47351 * 174.19482 * 10 9 7 12 12 C 1.50700 * 115.56207 * 39.16032 * 11 10 9 13 13 H 1.07997 * 120.00177 * 260.66924 * 12 11 10 14 14 C 1.37882 * 119.99850 * 80.66424 * 12 11 10 15 15 N 1.31514 * 119.99537 * 2.06762 * 14 12 11 16 16 Si 1.86796 * 120.00139 * 182.06529 * 14 12 11 17 17 H 1.48503 * 109.46605 * 90.00324 * 16 14 12 18 18 H 1.48493 * 109.47198 * 209.99799 * 16 14 12 19 19 H 1.48498 * 109.47083 * 330.00651 * 16 14 12 20 20 C 1.52996 * 117.50171 * 184.85572 * 11 10 9 21 21 C 1.52998 * 60.03499 * 107.47274 * 20 11 10 22 22 C 1.52996 * 109.46986 * 264.53303 * 7 5 3 23 23 C 1.53003 * 109.47257 * 298.40459 * 22 7 5 24 24 C 1.52997 * 109.47189 * 58.40566 * 22 7 5 25 25 H 1.09000 * 109.47079 * 59.99847 * 1 2 3 26 26 H 1.08999 * 109.47085 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46979 * 300.00470 * 1 2 3 28 28 H 1.08997 * 109.47308 * 240.00236 * 2 1 3 29 29 H 1.08996 * 109.47081 * 119.99627 * 2 1 3 30 30 H 1.09003 * 109.47036 * 265.63705 * 4 3 2 31 31 H 1.08998 * 109.47155 * 25.63666 * 4 3 2 32 32 H 1.09004 * 109.47440 * 145.64184 * 4 3 2 33 33 H 1.00893 * 111.00039 * 80.61744 * 9 7 5 34 34 H 1.09005 * 109.46955 * 54.19287 * 10 9 7 35 35 H 1.08996 * 109.47175 * 294.19641 * 10 9 7 36 36 H 0.97005 * 119.99622 * 175.00407 * 15 14 12 37 37 H 1.08998 * 117.50136 * 214.97448 * 20 11 10 38 38 H 1.09007 * 117.49840 * 359.97438 * 20 11 10 39 39 H 1.09006 * 117.49778 * 107.49746 * 21 20 11 40 40 H 1.08991 * 117.50475 * 252.52166 * 21 20 11 41 41 H 1.08997 * 109.46900 * 178.40676 * 22 7 5 42 42 H 1.09000 * 109.46820 * 59.00378 * 23 22 7 43 43 H 1.09001 * 109.46964 * 179.00613 * 23 22 7 44 44 H 1.09005 * 109.46747 * 299.00588 * 23 22 7 45 45 H 1.09001 * 109.46921 * 58.62564 * 24 22 7 46 46 H 1.09003 * 109.47106 * 178.62313 * 24 22 7 47 47 H 1.09000 * 109.47241 * 298.62298 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2430 2.0166 1.1671 6 8 2.1312 1.4169 2.2153 7 6 2.6331 3.4723 1.1698 8 1 2.2752 3.9459 0.2557 9 7 2.0329 4.1379 2.3337 10 6 1.8781 5.5790 2.0940 11 6 1.1213 6.2121 3.2633 12 6 1.4772 5.6854 4.6297 13 1 0.8474 4.9480 5.1051 14 6 2.6071 6.1448 5.2728 15 7 3.3518 7.0721 4.7116 16 14 3.0799 5.4500 6.9410 17 1 3.9667 4.2737 6.7539 18 1 3.7945 6.4888 7.7254 19 1 1.8544 5.0350 7.6698 20 6 0.7576 7.6938 3.1501 21 6 -0.3322 6.6276 3.0222 22 6 4.1567 3.5918 1.2433 23 6 4.6554 2.9620 2.5455 24 6 4.7834 2.8644 0.0522 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3118 1.9653 -1.5443 31 1 1.6364 1.6348 -2.0466 32 1 2.0212 3.1291 -1.1593 33 1 2.5743 3.9662 3.1675 34 1 1.3188 5.7359 1.1717 35 1 2.8616 6.0403 2.0055 36 1 4.1049 7.4473 5.1944 37 1 0.7758 8.2878 4.0639 38 1 1.0579 8.2179 2.2427 39 1 -1.0309 6.5200 3.8520 40 1 -0.7485 6.4498 2.0308 41 1 4.4402 4.6439 1.2167 42 1 4.3564 1.9144 2.5801 43 1 5.7423 3.0314 2.5897 44 1 4.2226 3.4916 3.3943 45 1 4.4093 3.2972 -0.8756 46 1 5.8676 2.9703 0.0913 47 1 4.5199 1.8075 0.0923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602837343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -9.971162 kcal Electronic energy + Delta-G solvation = -24234.741867 eV Core-core repulsion = 21032.475370 eV Total energy + Delta-G solvation = -3202.266497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13397 -37.17345 -35.91615 -35.49961 -32.33019 -31.86679 -31.22034 -27.30984 -27.04378 -26.30583 -25.29933 -23.73224 -22.62697 -20.95997 -20.62178 -19.09336 -18.20325 -17.01202 -16.28809 -15.74335 -15.60419 -14.67765 -14.54454 -14.42793 -14.04639 -13.67933 -13.56326 -13.12138 -12.98278 -12.67929 -12.50266 -12.39811 -12.25124 -12.16053 -11.85113 -11.64122 -11.46227 -11.34356 -11.01311 -10.91139 -10.85998 -10.84477 -10.62369 -10.42598 -10.34847 -10.06087 -9.46311 -9.14043 -8.79557 -8.50434 -8.38072 -8.03295 -7.31783 -5.96644 -4.00874 3.02521 3.17108 3.34505 3.41465 3.46869 4.46853 4.72476 4.98500 5.04357 5.06492 5.10947 5.15395 5.23335 5.32435 5.39962 5.40790 5.45286 5.53752 5.61737 5.68832 5.74699 5.81412 5.96040 5.97452 6.08558 6.13748 6.19132 6.21754 6.30702 6.42327 6.53338 6.59631 6.66319 6.71834 6.79582 6.85339 6.99100 7.17740 7.41719 7.54326 7.59513 7.95814 8.08075 8.44341 8.58850 8.59515 9.02261 9.63177 11.11079 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.005618 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.844437 B = 4982.856380 C = 5306.306984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.626 5.626 4 C 0.072 3.928 5 C 0.533 3.467 6 O -0.522 6.522 7 C 0.072 3.928 8 H 0.087 0.913 9 N -0.656 5.656 10 C 0.109 3.891 11 C 0.051 3.949 12 C -0.478 4.478 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.883 5.883 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.161 4.161 21 C -0.208 4.208 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.151 4.151 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.365 0.635 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.258 0.742 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -9.292 -13.891 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.362 5.362 4 C -0.071 4.071 5 C 0.321 3.679 6 O -0.395 6.395 7 C -0.043 4.043 8 H 0.105 0.895 9 N -0.292 5.292 10 C -0.020 4.020 11 C 0.051 3.949 12 C -0.516 4.516 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.711 3.289 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.200 4.200 21 C -0.245 4.245 22 C -0.138 4.138 23 C -0.209 4.209 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.190 0.810 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.453 -9.698 -13.446 16.584 hybrid contribution 1.171 0.166 0.808 1.432 sum 1.623 -9.532 -12.638 15.913 Atomic orbital electron populations 1.22133 0.96146 1.01759 1.02535 1.21325 0.94258 0.82849 1.02595 1.47940 1.67784 1.14094 1.06366 1.22040 1.01320 0.98168 0.85622 1.20752 0.75414 0.89073 0.82711 1.90647 1.50159 1.67665 1.31069 1.21665 0.93000 0.91858 0.97751 0.89487 1.60299 1.54298 1.11251 1.03344 1.21415 0.98225 0.86052 0.96330 1.18769 0.90024 0.92042 0.94109 1.20433 1.07839 1.23471 0.99878 0.92089 1.24962 0.96036 0.95162 0.97269 1.70002 1.18135 1.27097 1.36830 0.86732 0.78803 0.78822 0.84551 1.20498 1.21462 1.19865 1.22534 1.03422 0.93972 1.00033 1.22979 0.94156 1.08033 0.99306 1.21701 0.94851 1.01152 0.96128 1.21878 1.00235 1.01590 0.97235 1.22092 1.00698 1.00349 0.97714 0.92843 0.92018 0.91884 0.91233 0.90010 0.92092 0.91543 0.90893 0.80953 0.94515 0.95115 0.93243 0.90177 0.92287 0.90764 0.91957 0.89982 0.92027 0.93078 0.91334 0.92401 0.92719 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.11 1.28 6.15 -4.04 -0.02 1.26 16 3 N -0.63 -8.10 2.52 -181.57 -0.46 -8.56 16 4 C 0.07 0.67 8.79 59.85 0.53 1.20 16 5 C 0.53 9.06 5.19 -10.98 -0.06 9.00 16 6 O -0.52 -10.86 14.94 5.56 0.08 -10.78 16 7 C 0.07 1.21 1.93 -68.86 -0.13 1.08 16 8 H 0.09 1.32 5.35 -51.93 -0.28 1.04 16 9 N -0.66 -13.98 5.72 -107.95 -0.62 -14.60 16 10 C 0.11 2.40 5.63 -3.82 -0.02 2.38 16 11 C 0.05 1.26 1.75 -155.62 -0.27 0.99 16 12 C -0.48 -12.99 7.46 -34.44 -0.26 -13.25 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.07 1.84 5.44 -17.82 -0.10 1.74 16 15 N -0.88 -24.47 12.91 55.43 0.72 -23.76 16 16 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 C -0.16 -3.82 9.49 -26.73 -0.25 -4.07 16 21 C -0.21 -4.68 9.89 -26.69 -0.26 -4.94 16 22 C -0.12 -1.84 2.83 -90.62 -0.26 -2.09 16 23 C -0.15 -2.64 8.52 37.16 0.32 -2.32 16 24 C -0.15 -1.80 7.35 37.16 0.27 -1.53 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 30 H 0.06 0.50 5.58 -51.93 -0.29 0.21 16 31 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 32 H 0.07 0.70 5.83 -51.93 -0.30 0.40 16 33 H 0.37 8.64 5.22 -39.30 -0.20 8.43 16 34 H 0.04 0.74 7.71 -51.93 -0.40 0.34 16 35 H 0.03 0.72 7.59 -51.93 -0.39 0.33 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 42 H 0.06 1.10 6.41 -51.93 -0.33 0.77 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.40 6.27 -51.93 -0.33 1.07 16 45 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.68 6.27 -51.93 -0.33 0.36 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -30.06 360.75 -8.15 -38.22 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.15 Total: 9.65 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.14 Total: -12.02 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.36 Total: -46.91 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.06 -8.15 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602837343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.246 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds