Wall clock time and date at job start Tue Mar 31 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 N 1.46894 * 109.47070 * 120.00109 * 2 1 3 5 5 C 1.46902 * 111.00092 * 306.04444 * 4 2 1 6 6 C 1.46898 * 111.00355 * 69.99891 * 4 2 1 7 7 C 1.52997 * 109.47087 * 169.99886 * 6 4 2 8 8 C 1.53120 * 109.52109 * 175.00142 * 7 6 4 9 9 C 1.53039 * 109.27940 * 177.62498 * 8 7 6 10 10 N 1.46844 * 109.52178 * 300.81941 * 9 8 7 11 11 C 1.46901 * 111.00526 * 185.84060 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46848 * 111.20087 * 61.74385 * 10 9 8 23 23 C 1.53048 * 109.52064 * 298.25789 * 22 10 9 24 24 H 1.08998 * 109.46868 * 59.99957 * 1 2 3 25 25 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46967 * 299.99787 * 1 2 3 27 27 H 1.08998 * 109.46967 * 240.00213 * 2 1 3 28 28 H 1.08994 * 109.47126 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46684 * 300.00195 * 3 2 1 30 30 H 1.08992 * 109.47158 * 59.99562 * 3 2 1 31 31 H 1.08996 * 109.47158 * 183.96113 * 5 4 2 32 32 H 1.09005 * 109.46784 * 303.95928 * 5 4 2 33 33 H 1.08995 * 109.47282 * 63.95387 * 5 4 2 34 34 H 1.09003 * 109.46601 * 49.99770 * 6 4 2 35 35 H 1.08998 * 109.46913 * 289.99987 * 6 4 2 36 36 H 1.09002 * 109.52644 * 54.87821 * 7 6 4 37 37 H 1.09004 * 109.50479 * 57.68087 * 8 7 6 38 38 H 1.08998 * 109.50625 * 297.56400 * 8 7 6 39 39 H 1.09003 * 109.46575 * 180.80459 * 9 8 7 40 40 H 1.08995 * 109.45502 * 60.82603 * 9 8 7 41 41 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 42 42 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 43 43 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 44 44 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 45 45 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 46 46 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 47 47 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 48 48 H 1.08996 * 109.46339 * 58.26808 * 22 10 9 49 49 H 1.08994 * 109.46869 * 178.24483 * 22 10 9 50 50 H 1.08998 * 109.49998 * 299.23732 * 23 22 10 51 51 H 1.08994 * 109.50211 * 179.11499 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4166 6 6 1.7529 -2.1349 1.1203 7 6 2.4885 -2.8524 2.2538 8 6 2.1128 -4.3368 2.2486 9 6 2.8964 -5.0602 3.3463 10 7 4.3365 -4.9005 3.1077 11 6 5.1198 -5.6966 4.0620 12 6 6.5885 -5.7062 3.6338 13 6 7.4044 -6.5347 4.6281 14 6 8.8510 -6.5446 4.2059 15 1 9.1579 -6.0128 3.3175 16 6 9.7829 -7.2318 4.9545 17 7 9.4093 -7.8790 6.0366 18 14 11.5761 -7.2435 4.4315 19 1 12.0932 -5.8516 4.4050 20 1 12.3679 -8.0478 5.3966 21 1 11.6929 -7.8409 3.0769 22 6 4.7290 -3.4863 3.1552 23 6 4.0001 -2.7159 2.0518 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.8665 -0.5987 3.2925 32 1 1.6466 0.9538 2.4500 33 1 0.3556 -0.2709 2.4105 34 1 2.1025 -2.5169 0.1611 35 1 0.6814 -2.3118 1.2132 36 1 2.2071 -2.4089 3.2090 37 1 2.3587 -4.7710 1.2795 38 1 1.0441 -4.4424 2.4346 39 1 2.6419 -6.1201 3.3359 40 1 2.6396 -4.6345 4.3162 41 1 4.7401 -6.7181 4.0808 42 1 5.0342 -5.2588 5.0566 43 1 6.9682 -4.6846 3.6150 44 1 6.6741 -6.1438 2.6392 45 1 7.0248 -7.5563 4.6474 46 1 7.3187 -6.0965 5.6225 47 1 10.0648 -8.3628 6.5631 48 1 4.4636 -3.0681 4.1261 49 1 5.8055 -3.4029 3.0060 50 1 4.2758 -3.1246 1.0797 51 1 4.2797 -1.6634 2.0973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609133553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:08 Heat of formation + Delta-G solvation = -20.640557 kcal Electronic energy + Delta-G solvation = -22857.451532 eV Core-core repulsion = 19790.555469 eV Total energy + Delta-G solvation = -3066.896062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60421 -38.22913 -35.05067 -33.33244 -31.84571 -30.66354 -30.53472 -28.04466 -27.40821 -26.39526 -24.83760 -23.11974 -22.56659 -21.25629 -19.82762 -19.75135 -19.53149 -16.52552 -16.30393 -15.58803 -15.32952 -15.04908 -14.85942 -14.40797 -14.27120 -14.06702 -13.80313 -13.48034 -13.44285 -13.04238 -12.74105 -12.39732 -12.27433 -12.13326 -12.05121 -11.76720 -11.63497 -11.55615 -11.49602 -11.14377 -11.03883 -11.02190 -10.75921 -10.63407 -10.52918 -10.41856 -10.17210 -10.11291 -9.48974 -9.25104 -8.99605 -8.48306 -8.28608 -7.93055 -5.94279 -3.96013 3.37608 3.41318 3.44415 3.64623 4.24456 4.51489 4.52571 4.65621 4.75317 4.85368 4.91737 4.98210 5.06266 5.19828 5.27566 5.29923 5.38023 5.41331 5.42940 5.46281 5.51650 5.53832 5.59047 5.61931 5.68134 5.74319 5.79631 5.87216 5.88799 5.93189 5.96123 6.01260 6.08708 6.18791 6.29599 6.33680 6.42127 6.52479 6.80371 6.85945 6.87310 6.89833 7.21530 7.51679 7.53303 7.74948 7.90775 8.06753 8.50454 9.11111 9.67546 11.17212 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.002615 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.518920 B =10704.869618 C =11301.740976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.074 3.926 3 C -0.143 4.143 4 N -0.531 5.531 5 C 0.016 3.984 6 C 0.061 3.939 7 C -0.084 4.084 8 C -0.110 4.110 9 C 0.057 3.943 10 N -0.538 5.538 11 C 0.057 3.943 12 C -0.104 4.104 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.051 3.949 23 C -0.098 4.098 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.015 0.985 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.025 0.975 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.497 15.800 -10.203 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.255 5.255 5 C -0.132 4.132 6 C -0.066 4.066 7 C -0.103 4.103 8 C -0.148 4.148 9 C -0.071 4.071 10 N -0.263 5.263 11 C -0.070 4.070 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.076 4.076 23 C -0.136 4.136 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.099 0.901 50 H 0.084 0.916 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.816 15.584 -10.503 27.310 hybrid contribution -0.123 0.066 0.669 0.683 sum -19.939 15.650 -9.834 27.188 Atomic orbital electron populations 1.22485 0.97818 1.01938 1.02307 1.21718 0.92492 0.95654 0.93543 1.21837 1.02041 0.94819 1.01402 1.62190 1.58309 1.03019 1.01955 1.22489 0.97076 1.00437 0.93154 1.22188 0.97542 0.87196 0.99715 1.21233 0.96458 0.94710 0.97912 1.21600 0.98448 0.94683 1.00066 1.22016 0.88672 1.00152 0.96302 1.62001 1.03286 1.08884 1.52124 1.22264 0.95611 0.96811 0.92358 1.21644 0.91392 1.00445 1.00714 1.19071 0.93979 0.94757 0.93770 1.21229 0.93049 1.31266 1.10025 0.92733 1.25031 0.98924 0.95549 0.95054 1.69959 1.34265 1.33466 1.16010 0.86661 0.84989 0.78022 0.78343 1.20271 1.21355 1.20231 1.22166 1.00820 0.87674 0.96983 1.21505 0.93154 0.99922 0.99049 0.92213 0.92680 0.92271 0.90096 0.91715 0.92494 0.92686 0.91205 0.91378 0.95501 0.90777 0.95020 0.91653 0.91076 0.92272 0.91038 0.95596 0.91412 0.95587 0.93471 0.92655 0.96675 0.96905 0.93036 0.95701 0.90058 0.91565 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 8.44 37.16 0.31 -0.93 16 2 C 0.07 0.56 2.92 -67.71 -0.20 0.36 16 3 C -0.14 -0.98 9.12 37.16 0.34 -0.64 16 4 N -0.53 -4.66 4.23 -234.89 -0.99 -5.65 16 5 C 0.02 0.13 8.44 60.07 0.51 0.64 16 6 C 0.06 0.55 3.92 -3.83 -0.02 0.54 16 7 C -0.08 -0.87 2.17 -90.50 -0.20 -1.07 16 8 C -0.11 -1.17 5.38 -26.65 -0.14 -1.32 16 9 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 10 N -0.54 -8.45 4.66 -234.67 -1.09 -9.54 16 11 C 0.06 1.04 4.96 -3.83 -0.02 1.02 16 12 C -0.10 -2.25 5.08 -26.74 -0.14 -2.38 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C 0.05 0.75 5.29 -3.83 -0.02 0.73 16 23 C -0.10 -1.19 5.24 -26.65 -0.14 -1.33 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.39 6.91 -51.93 -0.36 0.03 16 26 H 0.06 0.40 6.42 -51.93 -0.33 0.07 16 27 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 6.47 -51.93 -0.34 0.03 16 31 H 0.07 0.60 6.37 -51.93 -0.33 0.27 16 32 H 0.07 0.51 6.30 -51.93 -0.33 0.18 16 33 H 0.03 0.20 6.46 -51.93 -0.34 -0.13 16 34 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 35 H 0.03 0.28 7.06 -51.93 -0.37 -0.09 16 36 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 42 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.05 1.01 6.43 -51.93 -0.33 0.67 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 1.30 6.21 -51.93 -0.32 0.98 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -30.12 377.42 -11.01 -41.13 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -10.05 Total: -4.84 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.28 Total: -17.08 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -1.35 Total: -42.00 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.12 -11.01 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609133553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.490 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds