Wall clock time and date at job start Tue Mar 31 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 H 1.08993 * 109.47562 * 305.00342 * 3 2 1 5 5 C 1.53006 * 109.46923 * 65.00230 * 3 2 1 6 6 C 1.52996 * 109.47032 * 184.99917 * 3 2 1 7 7 C 1.52996 * 109.47032 * 67.06354 * 6 3 2 8 8 H 1.08998 * 109.47460 * 305.90894 * 7 6 3 9 9 C 1.52999 * 109.47186 * 185.90450 * 7 6 3 10 10 C 1.53009 * 109.47295 * 175.74217 * 9 7 6 11 11 N 1.46909 * 109.47065 * 65.90725 * 7 6 3 12 12 C 1.46894 * 110.99583 * 259.04235 * 11 7 6 13 13 C 1.53038 * 109.46401 * 276.99785 * 12 11 7 14 14 C 1.53195 * 109.31344 * 178.61528 * 13 12 11 15 15 N 1.46928 * 108.77394 * 54.63774 * 14 13 12 16 16 C 1.36939 * 120.62942 * 126.36471 * 15 14 13 17 17 H 1.07998 * 120.00194 * 213.24506 * 16 15 14 18 18 C 1.38815 * 119.99729 * 33.25232 * 16 15 14 19 19 N 1.31615 * 120.00226 * 7.93424 * 18 16 15 20 20 Si 1.86809 * 119.99668 * 187.93947 * 18 16 15 21 21 H 1.48500 * 109.47285 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46942 * 119.99848 * 20 18 16 23 23 H 1.48497 * 109.46809 * 239.99545 * 20 18 16 24 24 C 1.46925 * 118.73765 * 306.39035 * 15 14 13 25 25 C 1.53048 * 109.45801 * 156.93036 * 12 11 7 26 26 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47151 * 299.99533 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99726 * 1 2 3 29 29 H 1.09000 * 109.47151 * 240.00467 * 2 1 3 30 30 H 1.08993 * 109.47288 * 120.00017 * 2 1 3 31 31 H 1.08999 * 109.47054 * 184.28651 * 5 3 2 32 32 H 1.09000 * 109.46772 * 304.28326 * 5 3 2 33 33 H 1.09000 * 109.46894 * 64.28317 * 5 3 2 34 34 H 1.09000 * 109.47555 * 307.06532 * 6 3 2 35 35 H 1.09003 * 109.47355 * 187.06144 * 6 3 2 36 36 H 1.09004 * 109.47150 * 55.74033 * 9 7 6 37 37 H 1.09000 * 109.47301 * 295.74108 * 9 7 6 38 38 H 1.08999 * 109.46797 * 295.20224 * 10 9 7 39 39 H 1.08995 * 109.47024 * 55.19530 * 10 9 7 40 40 H 1.08993 * 109.47084 * 175.19889 * 10 9 7 41 41 H 1.00896 * 110.99738 * 22.99920 * 11 7 6 42 42 H 1.08999 * 109.46503 * 36.96415 * 12 11 7 43 43 H 1.09000 * 109.50106 * 298.57021 * 13 12 11 44 44 H 1.09003 * 109.49409 * 58.66997 * 13 12 11 45 45 H 1.08994 * 109.58657 * 294.84868 * 14 13 12 46 46 H 1.09003 * 109.58743 * 174.42012 * 14 13 12 47 47 H 0.96999 * 119.99901 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.58757 * 293.81822 * 24 15 14 49 49 H 1.09003 * 109.70145 * 173.46426 * 24 15 14 50 50 H 1.09000 * 109.49741 * 301.33913 * 25 12 11 51 51 H 1.09005 * 109.49300 * 61.43517 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4444 -0.1257 7 6 3.9632 0.9217 -1.5073 8 1 3.5020 -0.0517 -1.6745 9 6 5.4852 0.7843 -1.5812 10 6 5.8767 0.1623 -2.9232 11 7 3.5060 1.8636 -2.5378 12 6 2.2738 1.3853 -3.1786 13 6 2.6275 0.3822 -4.2790 14 6 1.3387 -0.1403 -4.9216 15 7 0.5421 1.0050 -5.3825 16 6 0.1068 1.0754 -6.6790 17 1 0.0196 2.0344 -7.1680 18 6 -0.2226 -0.0858 -7.3645 19 7 -0.2675 -1.2363 -6.7269 20 14 -0.6020 -0.0155 -9.1923 21 1 -0.4837 1.3859 -9.6690 22 1 0.3597 -0.8729 -9.9308 23 1 -1.9841 -0.5038 -9.4301 24 6 0.2220 2.0734 -4.4262 25 6 1.5232 2.5712 -3.7891 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9315 3.1749 1.2759 32 1 0.5547 2.0580 1.4339 33 1 2.1309 1.6337 2.1438 34 1 3.9936 0.8019 0.6433 35 1 3.9385 2.4606 -0.0001 36 1 5.8322 0.1450 -0.7693 37 1 5.9438 1.7689 -1.4896 38 1 5.4892 -0.8550 -2.9789 39 1 5.4567 0.7559 -3.7351 40 1 6.9628 0.1427 -3.0115 41 1 3.3781 2.7872 -2.1522 42 1 1.6421 0.9001 -2.4345 43 1 3.2385 0.8733 -5.0363 44 1 3.1823 -0.4508 -3.8472 45 1 0.7691 -0.7098 -4.1873 46 1 1.5861 -0.7784 -5.7700 47 1 -0.4973 -2.0477 -7.2060 48 1 -0.4388 1.6846 -3.6515 49 1 -0.2687 2.8966 -4.9456 50 1 1.2921 3.2962 -3.0087 51 1 2.1446 3.0417 -4.5511 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:37 Heat of formation + Delta-G solvation = -16.338399 kcal Electronic energy + Delta-G solvation = -24593.747215 eV Core-core repulsion = 21527.037708 eV Total energy + Delta-G solvation = -3066.709507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.19624 -36.95200 -35.17533 -33.25792 -31.35012 -30.58094 -29.80288 -29.04815 -27.53407 -24.88705 -24.06921 -22.82502 -22.19819 -21.33479 -20.22461 -19.76113 -18.87601 -16.68430 -15.84938 -15.19900 -15.02955 -14.71866 -14.08311 -14.00777 -13.81061 -13.68067 -13.40200 -13.26585 -12.91389 -12.58820 -12.40515 -12.35818 -12.07434 -11.93413 -11.78262 -11.51561 -11.40753 -11.14241 -10.94978 -10.88345 -10.80576 -10.71624 -10.64545 -10.46151 -10.33273 -10.17616 -10.04456 -10.01646 -9.87375 -9.44627 -9.39104 -8.43964 -7.93313 -6.52216 -5.73096 -3.22625 3.39432 3.46828 3.49011 4.47730 4.52883 4.66181 4.77581 4.87936 5.20635 5.32758 5.33989 5.45224 5.46676 5.50851 5.52811 5.56220 5.59329 5.61401 5.73027 5.74916 5.81173 5.85807 5.91099 5.93392 6.03261 6.11979 6.14407 6.16604 6.18128 6.23515 6.28657 6.34058 6.42257 6.43624 6.44292 6.58287 6.67949 6.73596 6.79291 6.86569 6.89515 7.07970 7.50700 7.56165 7.76871 7.81512 7.86946 8.55474 9.29341 9.90217 10.49667 11.34787 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.004858 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.815932 B = 5762.208218 C = 6443.120569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.099 4.099 4 H 0.075 0.925 5 C -0.146 4.146 6 C -0.137 4.137 7 C 0.083 3.917 8 H 0.075 0.925 9 C -0.106 4.106 10 C -0.146 4.146 11 N -0.679 5.679 12 C 0.093 3.907 13 C -0.124 4.124 14 C 0.173 3.827 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.062 0.938 18 C 0.005 3.995 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.149 3.851 25 C -0.133 4.133 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.331 0.669 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.086 0.914 47 H 0.252 0.748 48 H 0.013 0.987 49 H 0.052 0.948 50 H 0.043 0.957 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 4.399 14.991 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.117 4.117 4 H 0.093 0.907 5 C -0.204 4.204 6 C -0.176 4.176 7 C -0.027 4.027 8 H 0.093 0.907 9 C -0.144 4.144 10 C -0.203 4.203 11 N -0.310 5.310 12 C -0.016 4.016 13 C -0.164 4.164 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.380 4.380 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.550 5.550 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.022 3.978 25 C -0.172 4.172 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.149 0.851 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.886 3.983 14.417 16.909 hybrid contribution -0.856 0.093 -0.153 0.874 sum 7.031 4.076 14.264 16.417 Atomic orbital electron populations 1.21817 0.95816 1.01657 1.01807 1.21619 0.96085 0.96190 1.01830 1.21266 0.95385 0.96652 0.98397 0.90719 1.21871 1.01383 0.99925 0.97185 1.22309 0.95479 1.01351 0.98486 1.21695 0.95351 0.96783 0.88847 0.90660 1.21473 0.95191 1.00312 0.97462 1.21695 0.99531 1.00604 0.98457 1.60684 1.34020 1.04513 1.31745 1.21605 0.88467 0.96050 0.95488 1.22236 1.00216 0.96952 0.96976 1.20790 0.87474 0.89400 0.97672 1.43978 1.59388 1.20944 1.07038 1.19208 1.38082 0.92859 0.87857 0.91991 1.25207 0.99257 0.96372 0.98501 1.69972 1.52267 0.98203 1.34544 0.86218 0.77627 0.77550 0.85371 1.20251 1.21608 1.21685 1.20845 0.92590 0.92107 0.92265 1.22197 0.99254 0.96430 0.99363 0.92884 0.92961 0.92327 0.91515 0.92508 0.93090 0.92467 0.93078 0.91897 0.91974 0.92982 0.92435 0.93569 0.90839 0.94091 0.85062 0.93796 0.92438 0.93847 0.96929 0.89541 0.93739 0.96885 0.92946 0.93839 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 2 C -0.12 -1.41 4.71 -26.73 -0.13 -1.53 16 3 C -0.10 -1.08 1.86 -90.62 -0.17 -1.25 16 4 H 0.07 0.95 5.91 -51.93 -0.31 0.64 16 5 C -0.15 -1.41 9.04 37.16 0.34 -1.07 16 6 C -0.14 -1.44 3.98 -26.74 -0.11 -1.55 16 7 C 0.08 1.02 1.87 -67.71 -0.13 0.89 16 8 H 0.08 1.05 5.20 -51.93 -0.27 0.78 16 9 C -0.11 -1.22 5.62 -26.73 -0.15 -1.37 16 10 C -0.15 -1.85 9.85 37.16 0.37 -1.48 16 11 N -0.68 -9.37 5.22 -99.69 -0.52 -9.89 16 12 C 0.09 1.53 1.41 -67.67 -0.10 1.44 16 13 C -0.12 -2.43 5.55 -26.61 -0.15 -2.58 16 14 C 0.17 4.18 5.24 -3.71 -0.02 4.16 16 15 N -0.59 -14.94 2.98 -172.32 -0.51 -15.45 16 16 C -0.25 -6.95 9.57 -15.06 -0.14 -7.09 16 17 H 0.06 1.70 7.84 -52.49 -0.41 1.29 16 18 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 19 N -0.91 -26.50 11.04 55.49 0.61 -25.89 16 20 Si 0.90 21.93 29.56 -169.99 -5.03 16.90 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.15 3.16 6.51 -3.71 -0.02 3.14 16 25 C -0.13 -2.32 5.38 -26.61 -0.14 -2.46 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.90 5.58 -51.93 -0.29 0.61 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 6.37 -51.93 -0.33 0.22 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.01 -51.93 -0.42 0.21 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.08 7.60 -51.93 -0.39 0.69 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.33 4.27 7.68 -39.29 -0.30 3.97 16 42 H 0.04 0.75 4.81 -51.93 -0.25 0.50 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.80 7.55 -51.93 -0.39 0.41 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.05 1.10 7.94 -51.93 -0.41 0.68 16 50 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 51 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -28.18 373.01 -10.01 -38.19 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -9.91 Total: 2.72 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.28 Total: -12.21 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.42 Total: -51.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.18 -10.01 -38.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.855 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds