Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47409 * 2 1 4 4 C 1.52994 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47186 * 55.00495 * 4 3 2 6 6 C 1.52998 * 109.47692 * 295.00385 * 4 3 2 7 7 C 1.53004 * 109.47159 * 174.99917 * 4 3 2 8 8 H 1.09000 * 109.46970 * 305.00511 * 7 4 3 9 9 C 1.53005 * 109.46867 * 65.00514 * 7 4 3 10 10 C 1.53002 * 109.47034 * 185.64915 * 9 7 4 11 11 N 1.46896 * 109.47149 * 185.00445 * 7 4 3 12 12 C 1.46900 * 111.00180 * 133.44427 * 11 7 4 13 13 C 1.53038 * 109.45805 * 274.24505 * 12 11 7 14 14 C 1.53189 * 109.31673 * 178.61510 * 13 12 11 15 15 N 1.46926 * 108.77521 * 54.62796 * 14 13 12 16 16 C 1.36936 * 120.62617 * 126.37650 * 15 14 13 17 17 H 1.08007 * 120.00260 * 331.94435 * 16 15 14 18 18 C 1.38807 * 120.00203 * 151.95356 * 16 15 14 19 19 N 1.31625 * 120.00150 * 340.87325 * 18 16 15 20 20 Si 1.86799 * 120.00344 * 160.87568 * 18 16 15 21 21 H 1.48494 * 109.47340 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47234 * 120.00169 * 20 18 16 23 23 H 1.48500 * 109.47023 * 239.99584 * 20 18 16 24 24 C 1.46922 * 118.74111 * 306.39553 * 15 14 13 25 25 C 1.53037 * 109.46247 * 154.17700 * 12 11 7 26 26 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47126 * 299.99900 * 1 2 3 28 28 H 1.09010 * 109.46999 * 59.99845 * 1 2 3 29 29 H 1.08998 * 109.47126 * 240.00100 * 2 1 3 30 30 H 1.09000 * 109.46828 * 120.00717 * 2 1 3 31 31 H 1.09008 * 109.46847 * 59.99991 * 3 2 1 32 32 H 1.08993 * 109.47362 * 300.00147 * 3 2 1 33 33 H 1.08998 * 109.47374 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.46895 * 300.00288 * 6 4 3 35 35 H 1.08997 * 109.46624 * 59.99745 * 6 4 3 36 36 H 1.09004 * 109.46723 * 305.64708 * 9 7 4 37 37 H 1.08993 * 109.46890 * 65.64596 * 9 7 4 38 38 H 1.09000 * 109.46733 * 174.70222 * 10 9 7 39 39 H 1.08997 * 109.46937 * 294.69916 * 10 9 7 40 40 H 1.08997 * 109.46980 * 54.70667 * 10 9 7 41 41 H 1.00909 * 110.99699 * 257.39320 * 11 7 4 42 42 H 1.08998 * 109.46060 * 34.20084 * 12 11 7 43 43 H 1.08997 * 109.49649 * 298.56450 * 13 12 11 44 44 H 1.08998 * 109.50228 * 58.65982 * 13 12 11 45 45 H 1.09001 * 109.58146 * 294.84742 * 14 13 12 46 46 H 1.08998 * 109.70835 * 174.49408 * 14 13 12 47 47 H 0.96992 * 120.00611 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.58793 * 293.82098 * 24 15 14 49 49 H 1.09008 * 109.70063 * 173.46383 * 24 15 14 50 50 H 1.09006 * 109.49840 * 301.33032 * 25 12 11 51 51 H 1.08992 * 109.50104 * 61.39911 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8329 1.3082 7 6 4.0801 2.8794 -0.1251 8 1 3.6458 3.3429 -1.0109 9 6 3.6749 3.6749 1.1175 10 6 4.0606 5.1437 0.9308 11 7 5.5441 2.8705 -0.2450 12 6 5.9886 3.7510 -1.3336 13 6 5.9589 2.9815 -2.6561 14 6 6.3897 3.9123 -3.7939 15 7 7.6987 4.4909 -3.4616 16 6 8.7470 4.3938 -4.3373 17 1 8.8004 3.5633 -5.0257 18 6 9.7410 5.3626 -4.3401 19 7 9.5132 6.5410 -3.7998 20 14 11.4022 4.9941 -5.1109 21 1 11.4038 3.6085 -5.6448 22 1 11.6582 5.9516 -6.2168 23 1 12.4656 5.1294 -4.0832 24 6 7.8617 5.1753 -2.1717 25 6 7.4145 4.2301 -1.0521 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6768 1.9563 -0.8899 33 1 5.1695 0.8333 1.3088 34 1 3.7159 1.4224 2.1498 35 1 3.7161 -0.1908 1.3977 36 1 2.5974 3.5978 1.2628 37 1 4.1890 3.2723 1.9902 38 1 3.6887 5.7268 1.7733 39 1 5.1459 5.2307 0.8796 40 1 3.6218 5.5199 0.0067 41 1 5.9800 3.1270 0.6282 42 1 5.3228 4.6115 -1.3995 43 1 6.6432 2.1350 -2.5998 44 1 4.9478 2.6205 -2.8445 45 1 5.6565 4.7104 -3.9104 46 1 6.4651 3.3470 -4.7227 47 1 10.2076 7.2181 -3.8021 48 1 7.2485 6.0763 -2.1560 49 1 8.9085 5.4430 -2.0275 50 1 7.4394 4.7580 -0.0988 51 1 8.0851 3.3718 -1.0104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -16.089176 kcal Electronic energy + Delta-G solvation = -23816.475255 eV Core-core repulsion = 20749.776556 eV Total energy + Delta-G solvation = -3066.698700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.11534 -37.22198 -35.13381 -33.17549 -31.48891 -31.23778 -29.87803 -28.77265 -26.77045 -25.69953 -24.21792 -22.71827 -22.11960 -21.52162 -20.91375 -19.29565 -18.62065 -16.69688 -15.59908 -15.52729 -15.01398 -14.77949 -14.71150 -14.08954 -13.79659 -13.60463 -13.50068 -13.40371 -13.00767 -12.83729 -12.49878 -12.36744 -12.08557 -11.92753 -11.79620 -11.62598 -11.35631 -11.35147 -11.14785 -10.99775 -10.79243 -10.69327 -10.59143 -10.56343 -10.42031 -10.25034 -10.21865 -10.06034 -9.86889 -9.52385 -9.33844 -8.42724 -7.99507 -6.62735 -5.75751 -3.16008 3.39652 3.47770 3.50621 4.33517 4.53863 4.71821 4.82790 4.91070 4.98473 5.11832 5.13833 5.26733 5.38707 5.40466 5.45846 5.50328 5.57709 5.61193 5.64489 5.70934 5.74410 5.76905 5.84538 5.88506 5.89912 5.96157 6.02944 6.06008 6.10171 6.14583 6.21598 6.22983 6.28186 6.40405 6.43866 6.49897 6.59394 6.67181 6.70818 6.72923 6.89705 7.11041 7.40341 7.50392 7.67956 7.77516 7.85052 8.49096 9.25410 9.89715 10.47096 11.33140 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.003529 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.449404 B = 7932.403505 C = 8361.824159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.143 4.143 7 C 0.092 3.908 8 H 0.067 0.933 9 C -0.147 4.147 10 C -0.156 4.156 11 N -0.681 5.681 12 C 0.098 3.902 13 C -0.115 4.115 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.249 4.249 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.176 3.824 25 C -0.141 4.141 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.335 0.665 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.053 0.947 47 H 0.252 0.748 48 H 0.015 0.985 49 H 0.084 0.916 50 H 0.043 0.957 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 -8.837 11.280 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.096 4.096 5 H 0.092 0.908 6 C -0.200 4.200 7 C -0.018 4.018 8 H 0.085 0.915 9 C -0.186 4.186 10 C -0.214 4.214 11 N -0.311 5.311 12 C -0.011 4.011 13 C -0.155 4.155 14 C 0.018 3.982 15 N -0.314 5.314 16 C -0.379 4.379 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.049 3.951 25 C -0.181 4.181 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.154 0.846 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.033 0.967 49 H 0.102 0.898 50 H 0.061 0.939 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.831 -9.260 10.878 20.592 hybrid contribution 0.689 0.856 0.056 1.100 sum -14.142 -8.404 10.934 19.753 Atomic orbital electron populations 1.21785 0.96323 1.01272 1.01614 1.21567 0.95320 0.97305 1.02052 1.21721 0.95646 0.96436 1.01678 1.21129 0.93492 0.96219 0.98802 0.90775 1.21840 1.01784 0.99623 0.96798 1.21650 0.88930 0.94472 0.96747 0.91493 1.22239 1.01633 0.95576 0.99111 1.21846 1.01870 0.96199 1.01449 1.60642 1.05232 1.56592 1.08683 1.21519 0.95909 0.92515 0.91178 1.21995 0.99523 0.99176 0.94844 1.20925 0.88073 0.94142 0.95085 1.44046 1.06391 1.65403 1.15556 1.19224 0.99617 1.04143 1.14938 0.91711 1.25019 1.00028 0.94496 1.00191 1.70069 1.32439 1.02980 1.49219 0.86269 0.84556 0.77774 0.78481 1.20225 1.21809 1.21596 1.20680 1.01286 0.90744 0.82376 1.22392 0.95446 1.00890 0.99331 0.93065 0.92988 0.92871 0.92122 0.91918 0.92153 0.92292 0.91934 0.93324 0.93434 0.91642 0.91544 0.93009 0.92522 0.92755 0.84637 0.94534 0.91923 0.93694 0.96957 0.92858 0.93780 0.96712 0.89775 0.93851 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.07 5.69 -26.73 -0.15 -1.22 16 3 C -0.12 -1.09 4.32 -26.74 -0.12 -1.20 16 4 C -0.08 -0.83 2.37 -90.62 -0.21 -1.04 16 5 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.14 -1.43 8.35 37.16 0.31 -1.12 16 7 C 0.09 1.10 1.73 -67.71 -0.12 0.98 16 8 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 9 C -0.15 -1.53 4.41 -26.73 -0.12 -1.64 16 10 C -0.16 -1.76 8.85 37.16 0.33 -1.43 16 11 N -0.68 -9.45 5.36 -99.70 -0.53 -9.98 16 12 C 0.10 1.65 1.68 -67.67 -0.11 1.54 16 13 C -0.12 -2.11 5.59 -26.61 -0.15 -2.26 16 14 C 0.14 3.13 6.52 -3.71 -0.02 3.11 16 15 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 16 C -0.25 -6.98 9.57 -15.06 -0.14 -7.12 16 17 H 0.07 1.79 7.90 -52.48 -0.41 1.38 16 18 C 0.00 0.03 4.86 -17.43 -0.08 -0.06 16 19 N -0.90 -26.53 11.33 55.49 0.63 -25.90 16 20 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.18 4.23 5.31 -3.71 -0.02 4.21 16 25 C -0.14 -2.70 5.35 -26.61 -0.14 -2.84 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.06 0.54 6.69 -51.92 -0.35 0.19 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 34 H 0.05 0.45 6.48 -51.93 -0.34 0.12 16 35 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 36 H 0.06 0.63 6.42 -51.93 -0.33 0.29 16 37 H 0.07 0.67 6.59 -51.93 -0.34 0.32 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.70 7.20 -51.93 -0.37 0.33 16 40 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.34 4.47 7.33 -39.29 -0.29 4.18 16 42 H 0.04 0.65 6.85 -51.93 -0.36 0.29 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.74 7.93 -51.93 -0.41 0.33 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 2.27 6.13 -51.92 -0.32 1.95 16 50 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 51 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -28.50 374.82 -10.21 -38.72 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -10.02 Total: 1.10 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.39 Total: -10.90 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.42 Total: -51.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.50 -10.21 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.628 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds