Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.53004 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47182 * 305.00430 * 4 3 2 6 6 C 1.53000 * 109.46784 * 64.99991 * 4 3 2 7 7 C 1.52996 * 109.47191 * 185.00006 * 4 3 2 8 8 H 1.08994 * 109.47196 * 60.00571 * 7 4 3 9 9 C 1.53001 * 109.47173 * 299.99869 * 7 4 3 10 10 C 1.52997 * 109.46968 * 174.38203 * 9 7 4 11 11 N 1.46898 * 109.46786 * 180.02562 * 7 4 3 12 12 C 1.46895 * 111.00277 * 273.63021 * 11 7 4 13 13 C 1.53045 * 109.46141 * 274.84540 * 12 11 7 14 14 C 1.53190 * 109.31503 * 178.59989 * 13 12 11 15 15 N 1.46925 * 108.76418 * 54.65356 * 14 13 12 16 16 C 1.36944 * 120.63035 * 126.36610 * 15 14 13 17 17 H 1.07996 * 119.99973 * 208.52009 * 16 15 14 18 18 C 1.38812 * 119.99821 * 28.51289 * 16 15 14 19 19 N 1.31615 * 120.00063 * 16.33685 * 18 16 15 20 20 Si 1.86804 * 119.99805 * 196.34088 * 18 16 15 21 21 H 1.48495 * 109.47282 * 89.99662 * 20 18 16 22 22 H 1.48491 * 109.46977 * 210.00135 * 20 18 16 23 23 H 1.48506 * 109.46768 * 329.99955 * 20 18 16 24 24 C 1.46928 * 118.74320 * 306.38491 * 15 14 13 25 25 C 1.53044 * 109.46259 * 154.79118 * 12 11 7 26 26 H 1.09001 * 109.46586 * 59.99725 * 1 2 3 27 27 H 1.08994 * 109.47399 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47210 * 300.00412 * 1 2 3 29 29 H 1.08993 * 109.47307 * 240.00336 * 2 1 3 30 30 H 1.08999 * 109.47007 * 119.99636 * 2 1 3 31 31 H 1.09000 * 109.46971 * 60.00314 * 3 2 1 32 32 H 1.08994 * 109.47337 * 299.99835 * 3 2 1 33 33 H 1.08998 * 109.47099 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.47454 * 300.00368 * 6 4 3 35 35 H 1.08994 * 109.47249 * 60.00146 * 6 4 3 36 36 H 1.08995 * 109.47073 * 294.38348 * 9 7 4 37 37 H 1.09004 * 109.46476 * 54.38505 * 9 7 4 38 38 H 1.09004 * 109.47107 * 185.38647 * 10 9 7 39 39 H 1.09005 * 109.47027 * 305.38209 * 10 9 7 40 40 H 1.09000 * 109.47379 * 65.38490 * 10 9 7 41 41 H 1.00903 * 110.99795 * 149.67445 * 11 7 4 42 42 H 1.08998 * 109.46061 * 34.81613 * 12 11 7 43 43 H 1.09007 * 109.49314 * 298.56584 * 13 12 11 44 44 H 1.08994 * 109.49720 * 58.66083 * 13 12 11 45 45 H 1.08998 * 109.59782 * 294.86908 * 14 13 12 46 46 H 1.08997 * 109.58821 * 174.43659 * 14 13 12 47 47 H 0.97005 * 119.99810 * 179.97438 * 19 18 16 48 48 H 1.09000 * 109.58239 * 293.82323 * 24 15 14 49 49 H 1.08997 * 109.70805 * 173.46934 * 24 15 14 50 50 H 1.09004 * 109.49388 * 301.33710 * 25 12 11 51 51 H 1.08994 * 109.49593 * 61.39965 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 4.0799 2.8796 0.1264 8 1 3.7163 3.3140 1.0575 9 6 3.5704 3.7068 -1.0556 10 6 3.9618 5.1727 -0.8585 11 7 5.5489 2.8796 0.1264 12 6 6.0754 2.6738 1.4822 13 6 6.1444 4.0174 2.2118 14 6 6.6607 3.7943 3.6367 15 7 7.9420 3.0785 3.5684 16 6 9.0531 3.5753 4.1961 17 1 10.0364 3.3564 3.8069 18 6 8.9154 4.3604 5.3326 19 7 7.7768 4.3688 5.9926 20 14 10.3462 5.4051 5.9250 21 1 10.2752 6.7465 5.2920 22 1 10.2754 5.5500 7.4011 23 1 11.6255 4.7492 5.5527 24 6 8.0088 1.8197 2.8136 25 6 7.4770 2.0649 1.3980 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 5.1705 0.8332 -1.3062 34 1 3.7172 -0.1910 -1.3961 35 1 3.7175 1.4220 -2.1484 36 1 4.0140 3.3332 -1.9785 37 1 2.4851 3.6253 -1.1150 38 1 3.5180 5.7768 -1.6499 39 1 3.5990 5.5186 0.1094 40 1 5.0471 5.2671 -0.8947 41 1 5.9105 3.7311 -0.2766 42 1 5.4179 1.9974 2.0283 43 1 6.8213 4.6859 1.6797 44 1 5.1498 4.4616 2.2508 45 1 5.9397 3.2000 4.1980 46 1 6.8054 4.7565 4.1278 47 1 7.6807 4.9172 6.7870 48 1 7.3976 1.0645 3.3078 49 1 9.0421 1.4767 2.7615 50 1 7.4310 1.1193 0.8577 51 1 8.1410 2.7517 0.8733 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = -16.122398 kcal Electronic energy + Delta-G solvation = -23887.888483 eV Core-core repulsion = 20821.188343 eV Total energy + Delta-G solvation = -3066.700140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.09294 -37.19314 -35.04486 -33.27463 -31.46225 -31.32924 -29.76537 -28.75564 -26.67853 -25.64317 -24.24220 -22.64648 -22.07152 -21.49792 -21.08213 -19.12805 -18.69160 -16.80945 -15.55494 -15.46840 -15.20274 -14.76124 -14.65974 -13.91003 -13.67806 -13.52486 -13.45862 -13.30628 -12.97472 -12.91516 -12.59947 -12.30362 -12.24478 -11.92913 -11.71805 -11.54823 -11.36577 -11.30120 -11.11666 -10.97279 -10.73108 -10.67329 -10.64960 -10.49754 -10.39381 -10.25252 -10.10900 -10.03926 -9.91528 -9.61139 -9.44503 -8.46530 -7.90583 -6.62033 -5.75519 -3.18383 3.39166 3.45915 3.47264 4.38426 4.52245 4.75478 4.79589 4.95128 5.06160 5.13499 5.14063 5.29437 5.38814 5.44990 5.49627 5.53396 5.60976 5.62441 5.67908 5.73951 5.75439 5.82797 5.86295 5.91405 5.93962 5.99022 6.03221 6.11074 6.15006 6.18172 6.20586 6.27866 6.32729 6.39669 6.50936 6.51937 6.62298 6.63513 6.72341 6.75128 6.89328 7.06979 7.38643 7.51943 7.67002 7.79468 7.83278 8.49201 9.25203 9.88902 10.46219 11.32797 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.003694 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.486866 B = 7578.615495 C = 7804.883095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.079 4.079 5 H 0.067 0.933 6 C -0.136 4.136 7 C 0.092 3.908 8 H 0.043 0.957 9 C -0.128 4.128 10 C -0.157 4.157 11 N -0.682 5.682 12 C 0.097 3.903 13 C -0.166 4.166 14 C 0.176 3.824 15 N -0.592 5.592 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.145 3.855 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.336 0.664 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.015 0.985 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.103 -4.409 -14.634 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.098 4.098 5 H 0.086 0.914 6 C -0.194 4.194 7 C -0.018 4.018 8 H 0.061 0.939 9 C -0.166 4.166 10 C -0.214 4.214 11 N -0.313 5.313 12 C -0.013 4.013 13 C -0.206 4.206 14 C 0.050 3.950 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.018 3.982 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.073 -4.991 -14.653 19.631 hybrid contribution 0.443 1.522 0.885 1.816 sum -11.630 -3.469 -13.768 18.353 Atomic orbital electron populations 1.21781 0.96309 1.01277 1.01591 1.21571 0.95331 0.97292 1.02086 1.21724 0.95548 0.96484 1.01692 1.21097 0.93690 0.96016 0.98992 0.91443 1.21753 1.02355 0.98932 0.96311 1.21517 0.88666 0.94735 0.96910 0.93922 1.21805 1.00969 0.94702 0.99087 1.21842 1.01578 0.96455 1.01554 1.60746 1.06012 1.42640 1.21942 1.21502 0.96231 0.96431 0.87113 1.22842 0.99197 0.97033 1.01557 1.20671 0.86075 0.98369 0.89929 1.44055 1.07835 1.20515 1.59126 1.19212 0.86508 1.27612 1.04641 0.91734 1.25056 0.97037 1.02021 0.95635 1.70032 1.25071 1.41610 1.18172 0.86289 0.82161 0.80744 0.77591 1.21531 1.21792 1.20424 1.20922 0.98302 0.88952 0.90026 1.21964 0.95262 0.99573 0.98788 0.92989 0.93056 0.92882 0.91851 0.92151 0.92358 0.91976 0.91314 0.93861 0.93454 0.91111 0.91510 0.92868 0.92800 0.92567 0.84411 0.91526 0.92783 0.93912 0.96689 0.89715 0.93726 0.96711 0.92854 0.92745 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.12 -1.16 4.19 -26.73 -0.11 -1.27 16 4 C -0.08 -0.91 2.30 -90.62 -0.21 -1.11 16 5 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 6 C -0.14 -1.48 8.44 37.16 0.31 -1.17 16 7 C 0.09 1.13 1.66 -67.71 -0.11 1.02 16 8 H 0.04 0.60 7.12 -51.93 -0.37 0.23 16 9 C -0.13 -1.33 4.78 -26.73 -0.13 -1.46 16 10 C -0.16 -1.64 9.65 37.16 0.36 -1.28 16 11 N -0.68 -9.51 5.29 -99.70 -0.53 -10.04 16 12 C 0.10 1.64 2.24 -67.67 -0.15 1.49 16 13 C -0.17 -3.18 5.31 -26.61 -0.14 -3.32 16 14 C 0.18 4.26 5.30 -3.71 -0.02 4.25 16 15 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 16 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 17 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 19 N -0.90 -26.58 11.18 55.49 0.62 -25.96 16 20 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 3.12 6.51 -3.71 -0.02 3.09 16 25 C -0.12 -2.09 5.69 -26.61 -0.15 -2.24 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 33 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 34 H 0.04 0.44 6.57 -51.93 -0.34 0.09 16 35 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 36 H 0.07 0.73 6.74 -51.93 -0.35 0.38 16 37 H 0.07 0.64 6.26 -51.93 -0.32 0.32 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.61 6.64 -51.93 -0.34 0.27 16 41 H 0.34 4.66 6.32 -39.29 -0.25 4.42 16 42 H 0.07 1.20 7.21 -51.93 -0.37 0.83 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.76 7.44 -51.93 -0.39 0.38 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -28.36 373.61 -10.11 -38.48 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.90 Total: 1.95 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.39 Total: -11.38 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.42 Total: -51.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.36 -10.11 -38.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.353 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds