Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 C 1.53001 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47145 * 304.99726 * 4 3 2 6 6 C 1.52999 * 109.46964 * 65.00237 * 4 3 2 7 7 C 1.53005 * 109.47096 * 184.99864 * 4 3 2 8 8 H 1.08996 * 109.47011 * 299.99944 * 7 4 3 9 9 C 1.53001 * 109.47009 * 59.99967 * 7 4 3 10 10 C 1.52999 * 109.46816 * 182.67592 * 9 7 4 11 11 N 1.46898 * 109.46990 * 179.97438 * 7 4 3 12 12 C 1.46903 * 110.99853 * 128.59626 * 11 7 4 13 13 C 1.53040 * 109.46283 * 263.27207 * 12 11 7 14 14 C 1.53193 * 109.31054 * 178.60339 * 13 12 11 15 15 N 1.46921 * 108.76865 * 54.65473 * 14 13 12 16 16 C 1.36936 * 120.63414 * 126.36189 * 15 14 13 17 17 H 1.07994 * 119.99859 * 208.94629 * 16 15 14 18 18 C 1.38814 * 119.99625 * 28.94317 * 16 15 14 19 19 N 1.31609 * 120.00084 * 18.53933 * 18 16 15 20 20 Si 1.86808 * 119.99597 * 198.53590 * 18 16 15 21 21 H 1.48499 * 109.47094 * 94.98384 * 20 18 16 22 22 H 1.48499 * 109.46515 * 214.98157 * 20 18 16 23 23 H 1.48498 * 109.47186 * 334.97805 * 20 18 16 24 24 C 1.46932 * 118.73604 * 306.38029 * 15 14 13 25 25 C 1.53041 * 109.45918 * 143.21475 * 12 11 7 26 26 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47439 * 300.00636 * 1 2 3 28 28 H 1.09007 * 109.46584 * 59.99934 * 1 2 3 29 29 H 1.08994 * 109.47093 * 239.99752 * 2 1 3 30 30 H 1.08999 * 109.46655 * 119.99411 * 2 1 3 31 31 H 1.09006 * 109.47302 * 59.99500 * 3 2 1 32 32 H 1.09001 * 109.47544 * 299.99945 * 3 2 1 33 33 H 1.09002 * 109.46744 * 299.99779 * 6 4 3 34 34 H 1.08996 * 109.47607 * 59.99772 * 6 4 3 35 35 H 1.09001 * 109.47177 * 180.02562 * 6 4 3 36 36 H 1.08999 * 109.47402 * 302.67871 * 9 7 4 37 37 H 1.08996 * 109.46857 * 62.67952 * 9 7 4 38 38 H 1.08990 * 109.47472 * 294.33233 * 10 9 7 39 39 H 1.08996 * 109.47065 * 54.33510 * 10 9 7 40 40 H 1.09005 * 109.46637 * 174.32540 * 10 9 7 41 41 H 1.00901 * 110.99858 * 4.64535 * 11 7 4 42 42 H 1.08999 * 109.45792 * 23.24785 * 12 11 7 43 43 H 1.09004 * 109.49241 * 298.56372 * 13 12 11 44 44 H 1.08998 * 109.49576 * 58.66160 * 13 12 11 45 45 H 1.09000 * 109.59787 * 294.86418 * 14 13 12 46 46 H 1.09001 * 109.69597 * 174.50499 * 14 13 12 47 47 H 0.97006 * 119.99667 * 179.97438 * 19 18 16 48 48 H 1.08994 * 109.58762 * 293.81915 * 24 15 14 49 49 H 1.09000 * 109.70278 * 173.46357 * 24 15 14 50 50 H 1.09011 * 109.49607 * 301.33679 * 25 12 11 51 51 H 1.08993 * 109.49709 * 61.43588 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0800 2.8796 0.1263 8 1 3.7170 3.4688 -0.7157 9 6 3.5694 3.4894 1.4334 10 6 4.0237 4.9474 1.5275 11 7 5.5490 2.8795 0.1276 12 6 6.0763 3.8249 -0.8655 13 6 6.4179 3.0731 -2.1541 14 6 6.9345 4.0673 -3.1988 15 7 8.0584 4.8176 -2.6222 16 6 9.2637 4.8761 -3.2696 17 1 10.1758 4.9922 -2.7032 18 6 9.3129 4.7860 -4.6539 19 7 8.2296 5.0099 -5.3669 20 14 10.9170 4.3472 -5.5048 21 1 10.9571 2.8852 -5.7621 22 1 11.0100 5.0793 -6.7934 23 1 12.0589 4.7284 -4.6354 24 6 7.8647 5.5037 -1.3374 25 6 7.3375 4.4934 -0.3136 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.7172 -0.1910 -1.3959 34 1 3.7176 1.4220 -2.1485 35 1 5.1706 0.8323 -1.3058 36 1 2.4805 3.4461 1.4536 37 1 3.9711 2.9285 2.2772 38 1 5.1099 4.9850 1.6087 39 1 3.7073 5.4849 0.6336 40 1 3.5771 5.4109 2.4072 41 1 5.9106 1.9508 -0.0297 42 1 5.3250 4.5857 -1.0772 43 1 7.1873 2.3290 -1.9480 44 1 5.5244 2.5778 -2.5340 45 1 6.1366 4.7576 -3.4727 46 1 7.2711 3.5280 -4.0842 47 1 8.2641 4.9473 -6.3343 48 1 7.1428 6.3110 -1.4595 49 1 8.8145 5.9120 -0.9920 50 1 7.0985 5.0092 0.6166 51 1 8.0980 3.7358 -0.1251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -15.347224 kcal Electronic energy + Delta-G solvation = -23954.675123 eV Core-core repulsion = 20888.008596 eV Total energy + Delta-G solvation = -3066.666526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.15214 -37.15437 -34.99578 -33.13445 -31.88382 -31.21340 -29.75855 -28.82973 -26.88135 -25.65677 -24.14730 -22.12197 -21.94395 -21.47813 -20.83127 -20.11333 -18.88597 -16.75068 -15.66736 -15.49928 -15.08906 -14.75689 -14.16577 -14.00797 -13.80744 -13.52941 -13.44902 -13.24487 -12.96757 -12.81917 -12.73750 -12.35766 -12.22840 -12.08918 -11.81364 -11.49033 -11.30871 -11.25049 -11.03304 -10.97487 -10.80818 -10.68687 -10.67158 -10.56411 -10.37369 -10.34271 -10.16096 -10.02944 -9.93651 -9.57606 -9.39475 -8.45725 -7.91246 -6.61811 -5.76246 -3.17832 3.39171 3.46431 3.47987 4.36798 4.52722 4.65509 4.73526 4.82902 4.98736 5.13158 5.23382 5.36583 5.38542 5.44976 5.48519 5.50435 5.59504 5.61835 5.65479 5.67679 5.73890 5.76947 5.83204 5.89521 5.97026 6.01707 6.03135 6.07262 6.13437 6.16480 6.21619 6.27812 6.32720 6.37699 6.40684 6.52941 6.61591 6.65440 6.70502 6.77705 6.90999 7.08410 7.36753 7.53459 7.64202 7.79844 7.84346 8.49041 9.24936 9.89026 10.46963 11.32303 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.003886 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.039138 B = 7204.084065 C = 8027.315171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.103 4.103 5 H 0.072 0.928 6 C -0.155 4.155 7 C 0.091 3.909 8 H 0.056 0.944 9 C -0.109 4.109 10 C -0.146 4.146 11 N -0.683 5.683 12 C 0.098 3.902 13 C -0.166 4.166 14 C 0.177 3.823 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.144 3.856 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.337 0.663 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.015 0.985 46 H 0.081 0.919 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.244 -7.769 12.052 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.122 4.122 5 H 0.091 0.909 6 C -0.212 4.212 7 C -0.019 4.019 8 H 0.074 0.926 9 C -0.147 4.147 10 C -0.203 4.203 11 N -0.314 5.314 12 C -0.011 4.011 13 C -0.207 4.207 14 C 0.050 3.950 15 N -0.314 5.314 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.018 3.982 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.032 0.968 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.189 -7.300 12.399 19.519 hybrid contribution 0.577 -0.732 -1.449 1.723 sum -12.613 -8.033 10.950 18.534 Atomic orbital electron populations 1.21780 0.96183 1.01321 1.01710 1.21584 0.95513 0.97251 1.01971 1.21708 0.94778 0.96573 1.02201 1.21547 0.95538 0.96773 0.98385 0.90936 1.22037 1.01385 1.00610 0.97179 1.21694 0.88491 0.94461 0.97239 0.92609 1.21589 0.98899 0.96529 0.97685 1.21694 1.02582 0.95806 1.00232 1.60728 1.05833 1.12301 1.52534 1.21601 0.96479 0.93647 0.89362 1.22901 0.99589 1.00068 0.98109 1.20640 0.88970 0.91486 0.93906 1.44043 1.10748 1.56195 1.20452 1.19201 0.84777 1.45344 0.88778 0.91767 1.25044 0.96917 1.00999 0.96681 1.70060 1.27844 1.51607 1.05104 0.86306 0.83548 0.78142 0.79015 1.21549 1.21837 1.20356 1.20933 0.97908 0.92577 0.86829 1.21992 0.96383 0.99098 0.98067 0.93036 0.92890 0.92823 0.91874 0.92247 0.91527 0.92080 0.92568 0.92540 0.92224 0.92552 0.92075 0.91457 0.93578 0.93938 0.84320 0.91829 0.92654 0.93388 0.96696 0.90087 0.93754 0.96789 0.92885 0.92857 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.05 5.69 -26.73 -0.15 -1.20 16 3 C -0.11 -1.06 4.47 -26.73 -0.12 -1.18 16 4 C -0.10 -1.07 1.90 -90.62 -0.17 -1.24 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.71 7.82 37.16 0.29 -1.42 16 7 C 0.09 1.11 1.73 -67.71 -0.12 0.99 16 8 H 0.06 0.77 7.14 -51.93 -0.37 0.40 16 9 C -0.11 -1.22 5.36 -26.73 -0.14 -1.36 16 10 C -0.15 -1.76 9.54 37.16 0.35 -1.40 16 11 N -0.68 -9.48 5.58 -99.69 -0.56 -10.04 16 12 C 0.10 1.65 2.24 -67.67 -0.15 1.50 16 13 C -0.17 -3.12 4.71 -26.61 -0.13 -3.25 16 14 C 0.18 4.23 5.31 -3.71 -0.02 4.21 16 15 N -0.59 -15.02 2.99 -172.32 -0.51 -15.53 16 16 C -0.25 -7.00 9.56 -15.06 -0.14 -7.15 16 17 H 0.06 1.77 7.90 -52.49 -0.41 1.36 16 18 C 0.00 0.06 4.86 -17.43 -0.08 -0.02 16 19 N -0.90 -26.49 11.36 55.49 0.63 -25.86 16 20 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 3.11 6.51 -3.71 -0.02 3.08 16 25 C -0.12 -2.08 5.69 -26.61 -0.15 -2.23 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 6.12 -51.93 -0.32 0.28 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.06 0.72 5.58 -51.93 -0.29 0.43 16 36 H 0.06 0.57 6.18 -51.93 -0.32 0.25 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.91 7.17 -51.93 -0.37 0.54 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.34 4.63 6.05 -39.29 -0.24 4.40 16 42 H 0.06 1.14 7.25 -51.93 -0.38 0.76 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.82 6.24 -51.93 -0.32 0.50 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 2.18 6.17 -51.93 -0.32 1.86 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 50 H 0.05 0.88 7.47 -51.92 -0.39 0.49 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -28.37 372.33 -10.11 -38.48 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -9.86 Total: 1.90 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.39 Total: -11.46 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.44 Total: -51.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.37 -10.11 -38.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.133 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds