Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46811 * 2 1 4 4 C 1.53002 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47014 * 54.99779 * 4 3 2 6 6 C 1.52995 * 109.47454 * 295.00215 * 4 3 2 7 7 C 1.52994 * 109.47372 * 174.99697 * 4 3 2 8 8 H 1.09003 * 109.47230 * 55.61613 * 7 4 3 9 9 C 1.53003 * 109.47376 * 295.62193 * 7 4 3 10 10 C 1.52994 * 109.47481 * 173.95326 * 9 7 4 11 11 N 1.46899 * 109.47348 * 175.61880 * 7 4 3 12 12 C 1.46897 * 111.00083 * 257.23304 * 11 7 4 13 13 C 1.53040 * 109.46381 * 274.09963 * 12 11 7 14 14 C 1.53190 * 109.31270 * 178.61304 * 13 12 11 15 15 N 1.46931 * 108.77659 * 54.63573 * 14 13 12 16 16 C 1.36934 * 120.63276 * 126.36432 * 15 14 13 17 17 H 1.08004 * 120.00170 * 327.76768 * 16 15 14 18 18 C 1.38812 * 120.00157 * 147.76225 * 16 15 14 19 19 N 1.31627 * 119.99551 * 346.73316 * 18 16 15 20 20 Si 1.86794 * 120.00282 * 166.73826 * 18 16 15 21 21 H 1.48501 * 109.47514 * 59.99549 * 20 18 16 22 22 H 1.48502 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46852 * 299.99834 * 20 18 16 24 24 C 1.46922 * 118.73655 * 306.39500 * 15 14 13 25 25 C 1.53045 * 109.45754 * 154.02813 * 12 11 7 26 26 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47544 * 300.00245 * 1 2 3 28 28 H 1.08999 * 109.46841 * 60.00665 * 1 2 3 29 29 H 1.08992 * 109.47544 * 239.99755 * 2 1 3 30 30 H 1.08999 * 109.46841 * 119.99335 * 2 1 3 31 31 H 1.08999 * 109.46999 * 59.99860 * 3 2 1 32 32 H 1.08999 * 109.46875 * 299.99313 * 3 2 1 33 33 H 1.09005 * 109.47380 * 61.77706 * 6 4 3 34 34 H 1.08994 * 109.47557 * 181.77909 * 6 4 3 35 35 H 1.08999 * 109.46873 * 301.77967 * 6 4 3 36 36 H 1.09001 * 109.46761 * 293.95541 * 9 7 4 37 37 H 1.09006 * 109.47177 * 53.95427 * 9 7 4 38 38 H 1.08996 * 109.47386 * 185.12496 * 10 9 7 39 39 H 1.09003 * 109.47101 * 305.12829 * 10 9 7 40 40 H 1.09000 * 109.47170 * 65.11979 * 10 9 7 41 41 H 1.00895 * 111.00012 * 21.19032 * 11 7 4 42 42 H 1.09004 * 109.45927 * 34.06343 * 12 11 7 43 43 H 1.08999 * 109.49692 * 298.56863 * 13 12 11 44 44 H 1.08997 * 109.49631 * 58.66131 * 13 12 11 45 45 H 1.09005 * 109.58905 * 294.85163 * 14 13 12 46 46 H 1.08993 * 109.70388 * 174.49151 * 14 13 12 47 47 H 0.97000 * 119.99058 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58793 * 293.81296 * 24 15 14 49 49 H 1.09003 * 109.70291 * 173.46251 * 24 15 14 50 50 H 1.08998 * 109.49912 * 301.33902 * 25 12 11 51 51 H 1.08998 * 109.49313 * 61.44253 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0795 0.8332 1.3082 7 6 4.0800 2.8796 -0.1251 8 1 3.6536 3.4876 0.6727 9 6 3.6625 3.4521 -1.4812 10 6 4.0397 4.9334 -1.5474 11 7 5.5451 2.8902 -0.0192 12 6 5.9736 3.3456 1.3100 13 6 6.0480 4.8741 1.3259 14 6 6.4615 5.3466 2.7232 15 7 7.7150 4.6776 3.0971 16 6 8.8017 5.4066 3.5003 17 1 8.9739 6.3909 3.0904 18 6 9.6820 4.8807 4.4359 19 7 9.3467 3.8117 5.1268 20 14 11.3423 5.6901 4.7146 21 1 11.1409 7.0924 5.1600 22 1 12.0892 4.9415 5.7571 23 1 12.1169 5.6796 3.4476 24 6 7.7806 3.2114 3.0294 25 6 7.3523 2.7626 1.6287 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7425 -0.2007 1.3828 34 1 5.1690 0.8621 1.3223 35 1 3.6900 1.4040 2.1511 36 1 4.1741 2.9109 -2.2771 37 1 2.5846 3.3459 -1.6042 38 1 3.6618 5.3634 -2.4749 39 1 3.6014 5.4582 -0.6985 40 1 5.1246 5.0338 -1.5158 41 1 5.9296 1.9819 -0.2316 42 1 5.2555 3.0093 2.0580 43 1 6.7840 5.2101 0.5956 44 1 5.0714 5.2885 1.0759 45 1 5.6823 5.0903 3.4412 46 1 6.6114 6.4262 2.7166 47 1 9.9620 3.4441 5.7803 48 1 7.1090 2.7808 3.7723 49 1 8.8007 2.8798 3.2233 50 1 7.3039 1.6742 1.5943 51 1 8.0760 3.1186 0.8956 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = -17.106483 kcal Electronic energy + Delta-G solvation = -23947.700920 eV Core-core repulsion = 20880.958107 eV Total energy + Delta-G solvation = -3066.742813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.17570 -37.10046 -34.96365 -33.16527 -31.88218 -31.16069 -29.79894 -28.81109 -26.86263 -25.61957 -24.16681 -22.24930 -22.04169 -21.49338 -20.58787 -19.97917 -18.88489 -16.66296 -15.68419 -15.40753 -15.24639 -14.73344 -14.30927 -14.05272 -13.78905 -13.57194 -13.45904 -13.40326 -12.94800 -12.77383 -12.57165 -12.38595 -12.07766 -11.96395 -11.85043 -11.45071 -11.31515 -11.22113 -11.05682 -10.95086 -10.86685 -10.71127 -10.68687 -10.58958 -10.39456 -10.31504 -10.20432 -10.05519 -9.88600 -9.52942 -9.33352 -8.43155 -7.96850 -6.54957 -5.74620 -3.21243 3.40905 3.45902 3.47616 4.38784 4.53163 4.61093 4.72722 4.83478 4.97358 5.13593 5.23891 5.35068 5.41425 5.45050 5.47856 5.52268 5.58665 5.62371 5.65092 5.70030 5.73185 5.75872 5.82314 5.88815 5.95001 6.02193 6.02671 6.06656 6.14748 6.17860 6.23342 6.26310 6.33542 6.37749 6.42598 6.57078 6.62609 6.68639 6.72886 6.74750 6.91903 7.12895 7.42044 7.51571 7.70271 7.78563 7.84581 8.53112 9.27378 9.89515 10.49170 11.33932 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.003700 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.037877 B = 7565.397836 C = 8181.675278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.114 4.114 5 H 0.069 0.931 6 C -0.153 4.153 7 C 0.092 3.908 8 H 0.069 0.931 9 C -0.109 4.109 10 C -0.143 4.143 11 N -0.680 5.680 12 C 0.098 3.902 13 C -0.116 4.116 14 C 0.145 3.855 15 N -0.590 5.590 16 C -0.252 4.252 17 H 0.062 0.938 18 C 0.004 3.996 19 N -0.905 5.905 20 Si 0.903 3.097 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.178 3.822 25 C -0.142 4.142 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.335 0.665 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.012 0.988 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.015 0.985 49 H 0.082 0.918 50 H 0.043 0.957 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 -6.257 -11.784 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.134 4.134 5 H 0.088 0.912 6 C -0.210 4.210 7 C -0.019 4.019 8 H 0.087 0.913 9 C -0.147 4.147 10 C -0.200 4.200 11 N -0.311 5.311 12 C -0.011 4.011 13 C -0.156 4.156 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.051 3.949 25 C -0.181 4.181 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.100 0.900 50 H 0.061 0.939 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.540 -5.703 -11.919 19.647 hybrid contribution 0.620 -0.495 0.788 1.119 sum -13.920 -6.198 -11.131 18.870 Atomic orbital electron populations 1.21777 0.96181 1.01328 1.01698 1.21583 0.95516 0.97285 1.01953 1.21690 0.94816 0.96538 1.02094 1.21804 0.95715 0.97558 0.98309 0.91232 1.21975 1.01467 1.00462 0.97120 1.21693 0.88639 0.93988 0.97564 0.91284 1.21549 0.99377 0.96681 0.97058 1.21675 1.02860 0.95499 0.99972 1.60675 1.07466 1.32551 1.30385 1.21516 0.96044 0.96008 0.87545 1.22029 0.99747 0.94420 0.99362 1.20939 0.88899 0.96188 0.92210 1.43970 1.08452 1.01594 1.77317 1.19120 1.01062 1.00802 1.17234 0.92019 1.25160 0.99961 0.98468 0.95844 1.70001 1.35362 1.24312 1.25192 0.86368 0.84102 0.78814 0.77439 1.20868 1.21663 1.20989 1.20658 1.01102 0.83752 0.89372 1.22413 0.95926 0.97729 1.02071 0.93034 0.92814 0.92905 0.92289 0.91885 0.92108 0.91649 0.92704 0.92311 0.92666 0.92304 0.92550 0.94095 0.93491 0.91356 0.84664 0.94427 0.92013 0.93555 0.97004 0.92912 0.93653 0.96690 0.89961 0.93877 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16 3 C -0.11 -1.04 4.55 -26.73 -0.12 -1.17 16 4 C -0.11 -1.18 1.79 -90.62 -0.16 -1.34 16 5 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -1.74 7.69 37.16 0.29 -1.46 16 7 C 0.09 1.09 1.56 -67.71 -0.11 0.98 16 8 H 0.07 0.93 7.22 -51.93 -0.38 0.56 16 9 C -0.11 -1.19 5.49 -26.73 -0.15 -1.33 16 10 C -0.14 -1.68 9.52 37.15 0.35 -1.33 16 11 N -0.68 -9.43 5.47 -99.69 -0.55 -9.97 16 12 C 0.10 1.64 1.30 -67.67 -0.09 1.55 16 13 C -0.12 -2.10 5.58 -26.61 -0.15 -2.25 16 14 C 0.14 3.14 6.52 -3.71 -0.02 3.11 16 15 N -0.59 -15.08 2.97 -172.32 -0.51 -15.59 16 16 C -0.25 -7.05 9.56 -15.06 -0.14 -7.20 16 17 H 0.06 1.70 7.86 -52.48 -0.41 1.29 16 18 C 0.00 0.12 4.98 -17.43 -0.09 0.04 16 19 N -0.90 -26.54 11.28 55.49 0.63 -25.92 16 20 Si 0.90 21.96 29.57 -169.99 -5.03 16.94 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.18 4.27 5.25 -3.71 -0.02 4.25 16 25 C -0.14 -2.70 5.35 -26.61 -0.14 -2.85 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 6.60 -51.93 -0.34 0.21 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 6.21 -51.93 -0.32 0.26 16 33 H 0.05 0.56 6.65 -51.93 -0.35 0.22 16 34 H 0.06 0.74 5.84 -51.93 -0.30 0.44 16 35 H 0.05 0.68 7.86 -51.93 -0.41 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.55 6.18 -51.93 -0.32 0.23 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.56 7.83 -51.93 -0.41 0.16 16 40 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 41 H 0.33 4.46 6.98 -39.29 -0.27 4.19 16 42 H 0.04 0.66 6.43 -51.93 -0.33 0.33 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.76 7.28 -51.93 -0.38 0.38 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 2.22 6.27 -51.93 -0.33 1.89 16 50 H 0.04 0.74 7.72 -51.93 -0.40 0.34 16 51 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -28.36 374.17 -10.14 -38.50 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -9.98 Total: 1.39 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.33 Total: -10.98 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.43 Total: -51.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.36 -10.14 -38.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.392 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds