Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 C 1.52998 * 109.47125 * 120.00025 * 2 1 3 5 5 C 1.52997 * 109.47014 * 64.99821 * 4 2 1 6 6 C 1.53006 * 109.47212 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47498 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46738 * 305.00121 * 7 6 5 9 9 C 1.52993 * 109.47590 * 184.99993 * 7 6 5 10 10 N 1.46900 * 109.47154 * 64.99609 * 7 6 5 11 11 C 1.46900 * 111.00174 * 232.59826 * 10 7 6 12 12 C 1.53044 * 109.45885 * 276.57328 * 11 10 7 13 13 C 1.53194 * 109.31293 * 178.61535 * 12 11 10 14 14 N 1.46924 * 108.77727 * 54.63695 * 13 12 11 15 15 C 1.36936 * 120.63261 * 126.36840 * 14 13 12 16 16 H 1.07995 * 119.99709 * 331.87980 * 15 14 13 17 17 C 1.38813 * 119.99784 * 151.87409 * 15 14 13 18 18 N 1.31615 * 120.00087 * 343.61104 * 17 15 14 19 19 Si 1.86799 * 119.99589 * 163.61383 * 17 15 14 20 20 H 1.48506 * 109.46908 * 90.00188 * 19 17 15 21 21 H 1.48501 * 109.47114 * 209.99933 * 19 17 15 22 22 H 1.48498 * 109.47280 * 330.00050 * 19 17 15 23 23 C 1.46932 * 118.73660 * 306.39121 * 14 13 12 24 24 C 1.53047 * 109.45973 * 156.50931 * 11 10 7 25 25 H 1.09004 * 109.47322 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.47407 * 59.99628 * 1 2 3 27 27 H 1.08996 * 109.47357 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47322 * 239.99894 * 2 1 3 29 29 H 1.09009 * 109.46714 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47355 * 299.99706 * 3 2 1 31 31 H 1.08996 * 109.47248 * 60.00382 * 3 2 1 32 32 H 1.08996 * 109.46950 * 304.99894 * 4 2 1 33 33 H 1.09001 * 109.47191 * 184.99877 * 4 2 1 34 34 H 1.09006 * 109.47319 * 60.00306 * 5 4 2 35 35 H 1.08992 * 109.47153 * 299.99838 * 5 4 2 36 36 H 1.08996 * 109.47271 * 59.99516 * 6 5 4 37 37 H 1.09001 * 109.46996 * 300.00058 * 6 5 4 38 38 H 1.09005 * 109.47192 * 303.79685 * 9 7 6 39 39 H 1.08999 * 109.47030 * 63.79433 * 9 7 6 40 40 H 1.08997 * 109.47548 * 183.79824 * 9 7 6 41 41 H 1.00903 * 111.00445 * 356.55374 * 10 7 6 42 42 H 1.08997 * 109.46419 * 36.53083 * 11 10 7 43 43 H 1.08998 * 109.50027 * 298.56951 * 12 11 10 44 44 H 1.09007 * 109.49548 * 58.66335 * 12 11 10 45 45 H 1.09001 * 109.58224 * 294.84514 * 13 12 11 46 46 H 1.08997 * 109.70265 * 174.49894 * 13 12 11 47 47 H 0.96996 * 119.99734 * 179.97438 * 18 17 15 48 48 H 1.08996 * 109.58524 * 293.82308 * 23 14 13 49 49 H 1.09003 * 109.70201 * 173.46128 * 23 14 13 50 50 H 1.08996 * 109.49484 * 301.33127 * 24 11 10 51 51 H 1.08997 * 109.49719 * 61.43020 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6351 -2.1954 1.1879 6 6 2.1446 -2.9166 2.4375 7 6 1.7404 -4.3909 2.3760 8 1 0.6615 -4.4664 2.2400 9 6 2.1398 -5.0842 3.6800 10 7 2.4225 -5.0390 1.2479 11 6 1.4622 -5.7367 0.3825 12 6 1.1663 -7.1219 0.9622 13 6 0.1386 -7.8329 0.0761 14 7 0.6376 -7.8512 -1.3057 15 6 0.7291 -9.0285 -1.9990 16 1 0.8832 -9.9567 -1.4688 17 6 0.6236 -9.0289 -3.3831 18 7 0.1229 -7.9826 -4.0052 19 14 1.1921 -10.5143 -4.3626 20 1 0.0611 -11.4630 -4.5244 21 1 1.6641 -10.0742 -5.7001 22 1 2.3030 -11.1867 -3.6422 23 6 1.0371 -6.5822 -1.9293 24 6 2.0548 -5.8852 -1.0208 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1369 33 1 3.1262 -0.6444 1.2951 34 1 2.0698 -2.6550 0.3002 35 1 0.5489 -2.2723 1.1421 36 1 1.7097 -2.4570 3.3250 37 1 3.2309 -2.8397 2.4839 38 1 3.2082 -4.9506 3.8500 39 1 1.5827 -4.6477 4.5090 40 1 1.9133 -6.1481 3.6101 41 1 2.9650 -4.3709 0.7211 42 1 0.5381 -5.1613 0.3275 43 1 2.0855 -7.7068 0.9944 44 1 0.7661 -7.0163 1.9706 45 1 -0.8101 -7.2975 0.1151 46 1 -0.0042 -8.8550 0.4266 47 1 0.0496 -7.9828 -4.9724 48 1 0.1618 -5.9448 -2.0539 49 1 1.4889 -6.7769 -2.9020 50 1 2.2870 -4.8994 -1.4238 51 1 2.9656 -6.4817 -0.9699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -19.968299 kcal Electronic energy + Delta-G solvation = -23443.119748 eV Core-core repulsion = 20376.252837 eV Total energy + Delta-G solvation = -3066.866911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.67980 -37.29015 -35.92543 -33.27264 -31.55683 -30.68619 -29.58651 -28.24289 -27.35979 -26.33358 -24.49979 -22.26053 -22.07038 -21.32183 -20.37238 -19.96826 -18.91663 -16.71719 -15.92902 -15.42049 -15.05750 -14.74568 -14.50594 -14.14521 -13.89797 -13.69666 -13.43083 -13.22492 -13.00215 -12.65365 -12.49454 -12.40213 -12.28218 -11.97745 -11.85932 -11.61469 -11.48094 -11.32401 -11.06860 -11.04070 -10.82990 -10.74440 -10.67751 -10.64485 -10.52999 -10.27784 -10.22270 -10.12405 -9.86644 -9.52802 -9.34074 -8.42680 -8.04908 -6.61221 -5.74351 -3.16276 3.40275 3.47078 3.50212 4.43596 4.48069 4.53988 4.68046 4.74741 4.99407 5.01534 5.10141 5.38720 5.40544 5.45012 5.48480 5.49329 5.50831 5.59230 5.62300 5.64651 5.67509 5.74804 5.78070 5.79642 5.89533 5.91617 5.98991 6.01602 6.05895 6.08872 6.14599 6.22303 6.26968 6.30261 6.39840 6.42557 6.60377 6.67837 6.71564 6.74553 6.89594 7.11323 7.43041 7.50576 7.71330 7.77326 7.84451 8.50373 9.26561 9.90308 10.47463 11.34293 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.003755 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.441996 B = 7455.730637 C = 8592.671495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.131 4.131 7 C 0.082 3.918 8 H 0.055 0.945 9 C -0.136 4.136 10 N -0.684 5.684 11 C 0.099 3.901 12 C -0.117 4.117 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.175 3.825 24 C -0.141 4.141 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.336 0.664 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 15.543 11.850 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.163 4.163 6 C -0.170 4.170 7 C -0.028 4.028 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.316 5.316 11 C -0.010 4.010 12 C -0.156 4.156 13 C 0.018 3.982 14 N -0.315 5.315 15 C -0.379 4.379 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.550 5.550 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.674 14.991 12.025 19.566 hybrid contribution -0.192 0.079 -1.020 1.041 sum 3.482 15.070 11.004 18.983 Atomic orbital electron populations 1.21889 0.95290 1.02088 1.01393 1.21142 0.95994 0.95987 0.98702 1.21841 1.00813 0.96219 1.01529 1.21623 1.00598 0.95116 0.97534 1.21713 1.01343 0.94990 0.98250 1.22034 1.01359 0.95411 0.98169 1.21617 0.97185 0.91460 0.92533 0.92654 1.21814 1.01080 1.00987 0.95553 1.60686 1.26178 1.32755 1.12022 1.21538 0.92537 0.94739 0.92187 1.22024 1.00507 0.95564 0.97540 1.20927 0.93357 0.97787 0.86170 1.44042 1.73443 1.04165 1.09812 1.19191 1.43026 0.86525 0.89122 0.91772 1.25038 0.99762 0.97448 0.97531 1.70024 1.46800 1.30140 1.08009 0.86310 0.78650 0.82411 0.79491 1.21455 1.21599 1.20485 1.20724 0.93327 0.85492 0.95635 1.22391 1.01260 0.99488 0.94889 0.92969 0.92908 0.92234 0.91125 0.92835 0.92832 0.92920 0.92239 0.92132 0.91920 0.91796 0.91746 0.91571 0.92806 0.93516 0.92250 0.84509 0.94869 0.91901 0.93584 0.96935 0.92851 0.93731 0.96762 0.89370 0.93842 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 37.15 0.33 -1.03 16 2 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.11 -0.99 4.68 -26.73 -0.13 -1.11 16 5 C -0.13 -1.28 4.82 -26.73 -0.13 -1.41 16 6 C -0.13 -1.33 4.56 -26.73 -0.12 -1.46 16 7 C 0.08 1.01 2.52 -67.72 -0.17 0.84 16 8 H 0.06 0.75 7.20 -51.93 -0.37 0.38 16 9 C -0.14 -1.59 9.52 37.15 0.35 -1.24 16 10 N -0.68 -9.88 6.10 -99.70 -0.61 -10.49 16 11 C 0.10 1.71 2.33 -67.67 -0.16 1.56 16 12 C -0.12 -2.16 5.57 -26.61 -0.15 -2.31 16 13 C 0.14 3.15 6.52 -3.71 -0.02 3.13 16 14 N -0.59 -15.20 2.99 -172.32 -0.52 -15.72 16 15 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 16 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 17 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 18 N -0.90 -26.56 11.16 55.49 0.62 -25.94 16 19 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 4.24 5.30 -3.71 -0.02 4.22 16 24 C -0.14 -2.74 5.38 -26.61 -0.14 -2.88 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.71 6.90 -51.93 -0.36 0.35 16 35 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 41 H 0.34 4.60 6.47 -39.29 -0.25 4.34 16 42 H 0.03 0.60 7.47 -51.93 -0.39 0.22 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.77 7.17 -51.92 -0.37 0.40 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 50 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 51 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -28.74 382.12 -10.55 -39.29 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -10.27 Total: 1.01 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.51 Total: -10.86 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.51 Total: -52.15 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.74 -10.55 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.319 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds