Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 C 1.52993 * 109.47508 * 120.00278 * 2 1 3 5 5 C 1.52999 * 109.47121 * 65.00109 * 4 2 1 6 6 C 1.52995 * 109.47479 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47479 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47114 * 54.99878 * 7 6 5 9 9 C 1.53006 * 109.47232 * 175.00180 * 7 6 5 10 10 N 1.46894 * 109.47100 * 294.99967 * 7 6 5 11 11 C 1.46900 * 111.00198 * 154.99722 * 10 7 6 12 12 C 1.53033 * 109.46141 * 275.03075 * 11 10 7 13 13 C 1.53192 * 109.31250 * 178.59966 * 12 11 10 14 14 N 1.46931 * 108.76876 * 54.65429 * 13 12 11 15 15 C 1.36932 * 120.63484 * 126.36046 * 14 13 12 16 16 H 1.07994 * 120.00262 * 207.70210 * 15 14 13 17 17 C 1.38815 * 119.99730 * 27.70251 * 15 14 13 18 18 N 1.31619 * 120.00294 * 17.34966 * 17 15 14 19 19 Si 1.86802 * 119.99904 * 197.35271 * 17 15 14 20 20 H 1.48497 * 109.47062 * 89.99830 * 19 17 15 21 21 H 1.48498 * 109.47217 * 209.99959 * 19 17 15 22 22 H 1.48500 * 109.47097 * 329.99746 * 19 17 15 23 23 C 1.46929 * 118.73566 * 306.38725 * 14 13 12 24 24 C 1.53043 * 109.45994 * 154.96953 * 11 10 7 25 25 H 1.09004 * 109.47091 * 299.99227 * 1 2 3 26 26 H 1.08997 * 109.47701 * 59.99811 * 1 2 3 27 27 H 1.09007 * 109.46600 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47091 * 240.00773 * 2 1 3 29 29 H 1.08997 * 109.47422 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47643 * 300.00471 * 3 2 1 31 31 H 1.09007 * 109.47146 * 60.00601 * 3 2 1 32 32 H 1.09000 * 109.47374 * 305.00422 * 4 2 1 33 33 H 1.08994 * 109.47444 * 185.00253 * 4 2 1 34 34 H 1.09008 * 109.47213 * 299.99856 * 5 4 2 35 35 H 1.09002 * 109.47243 * 59.99808 * 5 4 2 36 36 H 1.09008 * 109.47160 * 300.00374 * 6 5 4 37 37 H 1.09002 * 109.47106 * 59.99643 * 6 5 4 38 38 H 1.08996 * 109.47235 * 180.02562 * 9 7 6 39 39 H 1.09006 * 109.46907 * 300.00049 * 9 7 6 40 40 H 1.08991 * 109.47076 * 59.99775 * 9 7 6 41 41 H 1.00895 * 111.00257 * 31.04281 * 10 7 6 42 42 H 1.09001 * 109.45702 * 35.00483 * 11 10 7 43 43 H 1.08998 * 109.49936 * 298.56013 * 12 11 10 44 44 H 1.08998 * 109.49999 * 58.65928 * 12 11 10 45 45 H 1.08997 * 109.59852 * 294.86303 * 13 12 11 46 46 H 1.08998 * 109.58915 * 174.43627 * 13 12 11 47 47 H 0.96999 * 120.00351 * 180.02562 * 18 17 15 48 48 H 1.09002 * 109.58257 * 293.81872 * 23 14 13 49 49 H 1.08997 * 109.70574 * 173.46668 * 23 14 13 50 50 H 1.08998 * 109.50073 * 301.33909 * 24 11 10 51 51 H 1.08995 * 109.49655 * 61.40883 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 -2.1955 1.1878 6 6 2.1449 -2.9167 2.4372 7 6 1.7408 -4.3911 2.3756 8 1 2.1011 -4.8279 1.4442 9 6 2.3553 -5.1384 3.5609 10 7 0.2770 -4.5004 2.4335 11 6 -0.1832 -5.7461 1.8056 12 6 -0.3235 -5.5348 0.2964 13 6 -0.7698 -6.8454 -0.3593 14 7 -1.9970 -7.3106 0.3013 15 6 -3.1177 -7.5980 -0.4311 16 1 -4.0954 -7.5015 0.0175 17 6 -2.9972 -8.0135 -1.7501 18 7 -1.8419 -8.4582 -2.1971 19 14 -4.4747 -7.9413 -2.8908 20 1 -4.5115 -6.6214 -3.5702 21 1 -4.3684 -9.0185 -3.9073 22 1 -5.7189 -8.1265 -2.1015 23 6 -1.9989 -7.4611 1.7629 24 6 -1.5385 -6.1437 2.3948 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6055 -0.2619 2.1369 33 1 3.1263 -0.6443 1.2950 34 1 0.5490 -2.2725 1.1419 35 1 2.0700 -2.6549 0.3000 36 1 3.2313 -2.8397 2.4836 37 1 1.7100 -2.4571 3.3248 38 1 2.0678 -6.1888 3.5167 39 1 3.4415 -5.0572 3.5179 40 1 1.9949 -4.7015 4.4921 41 1 -0.1626 -3.6976 2.0090 42 1 0.5416 -6.5378 1.9956 43 1 -1.0666 -4.7606 0.1050 44 1 0.6366 -5.2288 -0.1190 45 1 0.0128 -7.5956 -0.2466 46 1 -0.9665 -6.6759 -1.4179 47 1 -1.7575 -8.7481 -3.1189 48 1 -1.3164 -8.2616 2.0486 49 1 -3.0055 -7.6991 2.1065 50 1 -1.4431 -6.2712 3.4731 51 1 -2.2698 -5.3635 2.1840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610814020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -21.150467 kcal Electronic energy + Delta-G solvation = -23493.101698 eV Core-core repulsion = 20426.183525 eV Total energy + Delta-G solvation = -3066.918174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.68306 -37.30112 -35.90135 -33.32135 -31.62394 -30.46824 -29.71181 -28.15687 -27.32824 -26.39410 -24.49779 -22.24738 -22.05372 -21.36017 -20.25213 -19.91746 -19.07762 -16.81761 -15.96337 -15.45008 -15.03743 -14.69617 -14.38990 -14.17106 -13.88414 -13.55817 -13.40346 -13.28720 -13.01118 -12.63464 -12.49750 -12.37364 -12.28010 -11.96306 -11.87441 -11.59217 -11.44398 -11.36461 -11.15955 -10.94180 -10.88424 -10.71962 -10.69143 -10.63036 -10.46946 -10.34647 -10.15427 -10.09869 -9.94970 -9.62361 -9.45211 -8.46451 -7.93775 -6.63546 -5.75680 -3.17417 3.39353 3.46195 3.47497 4.45059 4.52155 4.52444 4.70575 4.76708 4.97003 5.09868 5.11840 5.36192 5.40842 5.44005 5.49089 5.51159 5.56319 5.60609 5.62425 5.66087 5.71127 5.75557 5.78508 5.81895 5.89140 5.93253 6.00173 6.04232 6.07488 6.11553 6.17735 6.22051 6.29847 6.32414 6.38808 6.40504 6.58696 6.62108 6.70508 6.74656 6.88774 7.06381 7.38093 7.50831 7.66415 7.78595 7.83121 8.48445 9.24847 9.88882 10.45887 11.32706 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004107 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.915300 B = 6815.478704 C = 8143.862240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.126 4.126 6 C -0.119 4.119 7 C 0.081 3.919 8 H 0.043 0.957 9 C -0.138 4.138 10 N -0.685 5.685 11 C 0.095 3.905 12 C -0.165 4.165 13 C 0.176 3.824 14 N -0.592 5.592 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.336 0.664 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 15.083 7.890 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.163 4.163 6 C -0.157 4.157 7 C -0.029 4.029 8 H 0.061 0.939 9 C -0.196 4.196 10 N -0.317 5.317 11 C -0.014 4.014 12 C -0.206 4.206 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.198 4.198 18 N -0.549 5.549 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.018 3.982 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.393 14.747 8.377 19.387 hybrid contribution -0.531 0.201 -1.691 1.784 sum 8.861 14.948 6.686 18.619 Atomic orbital electron populations 1.21899 0.95119 1.02261 1.01467 1.21137 0.96112 0.95905 0.98593 1.21844 1.00701 0.96293 1.01584 1.21622 1.00445 0.95179 0.97630 1.21720 1.01480 0.94977 0.98153 1.21764 1.00704 0.94844 0.98364 1.21489 0.89027 0.94837 0.97525 0.93938 1.21779 0.98867 1.00480 0.98437 1.60811 1.04994 1.05214 1.60665 1.21517 0.96837 0.90894 0.92172 1.22835 0.99297 1.02044 0.96433 1.20681 0.87243 0.89349 0.97827 1.44064 1.11105 1.76029 1.00336 1.19218 0.85937 1.38587 0.94228 0.91679 1.25027 0.96806 0.98770 0.99157 1.70040 1.24064 1.45046 1.15714 0.86299 0.82492 0.77248 0.80820 1.21525 1.21800 1.20419 1.20923 0.98450 0.93229 0.85614 1.21969 0.95685 0.99436 0.98556 0.92811 0.92977 0.92094 0.91335 0.92930 0.92881 0.92828 0.92058 0.92282 0.91495 0.92126 0.91832 0.91362 0.92752 0.93203 0.92360 0.84424 0.91451 0.92767 0.93873 0.96676 0.89634 0.93725 0.96676 0.92807 0.92716 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 37.16 0.33 -1.09 16 2 C -0.10 -0.89 2.92 -90.62 -0.26 -1.15 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.11 -1.00 4.68 -26.73 -0.13 -1.12 16 5 C -0.13 -1.29 4.80 -26.73 -0.13 -1.42 16 6 C -0.12 -1.24 4.81 -26.73 -0.13 -1.37 16 7 C 0.08 1.03 2.46 -67.71 -0.17 0.86 16 8 H 0.04 0.60 7.10 -51.93 -0.37 0.23 16 9 C -0.14 -1.64 9.40 37.16 0.35 -1.30 16 10 N -0.68 -9.88 6.06 -99.70 -0.60 -10.48 16 11 C 0.10 1.64 2.24 -67.67 -0.15 1.49 16 12 C -0.17 -3.19 5.31 -26.61 -0.14 -3.33 16 13 C 0.18 4.26 5.31 -3.71 -0.02 4.24 16 14 N -0.59 -15.12 2.99 -172.32 -0.52 -15.63 16 15 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 18 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 19 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.14 3.12 6.51 -3.71 -0.02 3.10 16 24 C -0.12 -2.13 5.69 -26.61 -0.15 -2.28 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.75 4.85 -51.92 -0.25 0.50 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.71 7.43 -51.93 -0.39 0.32 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.34 4.75 6.22 -39.29 -0.24 4.50 16 42 H 0.07 1.23 7.11 -51.93 -0.37 0.86 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.77 7.41 -51.93 -0.38 0.39 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -28.60 381.32 -10.52 -39.12 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -10.23 Total: 1.65 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.51 Total: -11.37 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.50 Total: -52.05 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.60 -10.52 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610814020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.965 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds