Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00145 * 2 1 4 4 C 1.46907 * 110.99469 * 123.94966 * 2 1 3 5 5 C 1.52997 * 109.47215 * 66.04857 * 4 2 1 6 6 C 1.53001 * 109.46922 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.46922 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47199 * 90.00447 * 18 16 14 20 20 H 1.48500 * 109.47216 * 210.00118 * 18 16 14 21 21 H 1.48493 * 109.47310 * 329.99864 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08999 * 109.47350 * 296.05368 * 1 2 3 25 25 H 1.09006 * 109.46698 * 56.05156 * 1 2 3 26 26 H 1.08997 * 109.47348 * 176.04421 * 1 2 3 27 27 H 1.09003 * 109.46750 * 183.95163 * 3 2 1 28 28 H 1.09002 * 109.46606 * 303.94632 * 3 2 1 29 29 H 1.08997 * 109.47170 * 63.94829 * 3 2 1 30 30 H 1.09001 * 109.46759 * 306.04394 * 4 2 1 31 31 H 1.09003 * 109.46615 * 186.05013 * 4 2 1 32 32 H 1.08998 * 109.47350 * 59.99629 * 5 4 2 33 33 H 1.08996 * 109.46626 * 299.99735 * 5 4 2 34 34 H 1.08998 * 109.47498 * 59.99612 * 6 5 4 35 35 H 1.09004 * 109.46843 * 299.99247 * 6 5 4 36 36 H 1.08998 * 109.47350 * 59.99522 * 7 6 5 37 37 H 1.09003 * 109.47457 * 299.99533 * 7 6 5 38 38 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 39 39 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 40 40 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 41 41 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 42 42 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 43 43 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 45 45 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 46 46 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 47 47 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9706 6 6 2.1790 -3.0401 2.1558 7 6 1.8156 -4.5168 1.9884 8 6 2.3555 -5.3026 3.1554 9 8 2.9700 -4.7370 4.0349 10 7 2.1546 -6.6336 3.2225 11 6 2.6744 -7.4131 4.3543 12 6 3.5178 -8.5716 3.8129 13 6 2.6823 -9.3867 2.8232 14 6 3.4980 -10.5472 2.3140 15 1 4.5108 -10.6889 2.6611 16 6 2.9512 -11.4278 1.4050 17 7 1.7176 -11.2555 0.9827 18 14 3.9624 -12.8658 0.7733 19 1 3.7590 -14.0407 1.6584 20 1 3.5318 -13.2054 -0.6067 21 1 5.4001 -12.4946 0.7659 22 6 2.2710 -8.4980 1.6471 23 6 1.4130 -7.3385 2.1642 24 1 -0.3634 0.4514 0.9232 25 1 -0.3633 0.5739 -0.8526 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9162 -0.8526 29 1 1.7044 1.8724 0.9232 30 1 1.5609 -0.3871 2.0629 31 1 3.0796 -0.6610 1.1758 32 1 2.0657 -2.6214 0.0454 33 1 0.5471 -2.3474 0.9325 34 1 1.7443 -2.6612 3.0808 35 1 3.2633 -2.9354 2.1943 36 1 2.2506 -4.8955 1.0635 37 1 0.7313 -4.6221 1.9496 38 1 1.8431 -7.8080 4.9384 39 1 3.2928 -6.7742 4.9846 40 1 4.3978 -8.1753 3.3062 41 1 3.8306 -9.2108 4.6386 42 1 1.7900 -9.7621 3.3241 43 1 1.3327 -11.8754 0.3434 44 1 3.1627 -8.1023 1.1608 45 1 1.6958 -9.0851 0.9312 46 1 1.1998 -6.6490 1.3474 47 1 0.4779 -7.7272 2.5677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611677501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -56.680669 kcal Electronic energy + Delta-G solvation = -22428.273346 eV Core-core repulsion = 19223.981372 eV Total energy + Delta-G solvation = -3204.291973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69361 -38.01921 -36.84048 -34.41698 -33.49283 -31.41487 -30.22918 -29.41372 -27.87014 -26.37543 -25.11658 -23.03275 -22.42756 -21.68586 -20.88438 -19.68936 -18.17213 -16.86182 -16.18034 -16.12055 -15.64692 -15.35173 -15.31004 -14.81843 -14.55590 -14.26548 -13.39415 -13.22685 -13.04389 -12.81213 -12.68194 -12.62142 -12.43192 -12.23298 -12.00055 -11.97619 -11.64087 -11.32500 -11.29692 -11.22054 -11.00173 -10.94265 -10.63830 -10.54840 -10.38216 -10.10799 -9.66667 -9.34920 -9.17355 -8.92767 -8.64258 -8.39072 -7.98519 -6.04625 -4.10638 3.03458 3.27385 3.34504 3.38107 3.47224 3.72376 4.39849 4.66854 4.82529 4.84955 4.90587 5.06028 5.15982 5.22060 5.24935 5.33474 5.34329 5.44276 5.52537 5.55938 5.57940 5.69758 5.73814 5.78851 5.84890 5.91806 5.97422 6.09412 6.16562 6.22196 6.29483 6.34330 6.46176 6.66027 6.74194 6.76092 6.89938 7.03523 7.14705 7.27126 7.65296 7.90573 7.96182 8.02834 8.38911 8.60652 8.92794 9.54564 11.00931 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.002877 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.513979 B = 9730.120580 C =10322.950374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.510 3.490 9 O -0.563 6.563 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.124 4.124 23 C 0.103 3.897 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 18.779 -1.474 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.443 6.443 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.019 4.019 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.123 0.877 46 H 0.086 0.914 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.424 18.754 -1.572 19.129 hybrid contribution 0.148 -0.568 0.252 0.639 sum -3.276 18.185 -1.320 18.525 Atomic orbital electron populations 1.22448 0.87474 1.02606 1.00251 1.62001 1.08055 1.13691 1.43569 1.22380 1.00850 0.88889 1.00326 1.22177 1.00295 0.93986 0.90910 1.21624 1.01110 0.93609 0.99121 1.21276 1.01953 0.92699 0.97990 1.21657 1.02398 0.95716 0.97978 1.20627 0.79832 0.82178 0.87562 1.90626 1.42775 1.69650 1.41212 1.48344 1.54436 1.06589 1.24077 1.21667 0.97898 0.93519 0.88058 1.22001 0.98614 0.95531 0.99975 1.18639 0.94994 0.92229 0.91192 1.21211 0.99620 1.09361 1.24765 0.92709 1.24958 0.94958 0.97730 0.96340 1.69834 1.13615 1.37195 1.32495 0.86613 0.80551 0.82841 0.78121 1.20720 1.21235 1.19985 1.22025 0.98471 0.94146 1.01629 1.22097 0.95408 0.95539 0.88847 0.95746 0.91577 0.90856 0.91319 0.91458 0.95781 0.94796 0.90654 0.90900 0.91915 0.91551 0.91214 0.88849 0.89272 0.92373 0.90470 0.93001 0.92206 0.95485 0.92975 0.94231 0.87741 0.91372 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.55 -5.09 5.02 -251.25 -1.26 -6.36 16 3 C 0.02 0.18 9.57 60.07 0.57 0.76 16 4 C 0.05 0.51 4.96 -3.82 -0.02 0.49 16 5 C -0.12 -1.14 5.14 -26.73 -0.14 -1.27 16 6 C -0.10 -1.18 4.50 -26.73 -0.12 -1.30 16 7 C -0.14 -1.77 4.05 -27.88 -0.11 -1.88 16 8 C 0.51 8.77 7.70 -10.99 -0.08 8.68 16 9 O -0.56 -11.26 15.39 5.55 0.09 -11.18 16 10 N -0.60 -10.80 2.98 -172.52 -0.51 -11.32 16 11 C 0.11 2.06 6.42 -3.71 -0.02 2.03 16 12 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 13 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 14 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -24.29 11.31 55.43 0.63 -23.66 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C -0.12 -2.70 5.16 -26.59 -0.14 -2.84 16 23 C 0.10 1.80 6.35 -3.54 -0.02 1.78 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 27 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 37 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 46 H 0.07 1.00 5.97 -51.93 -0.31 0.69 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -29.19 363.72 -9.61 -38.80 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.77 Total: -0.64 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.24 Total: -6.90 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -1.15 Total: -41.33 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.19 -9.61 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611677501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.880 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds