Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52995 * 109.47404 * 300.00056 * 3 2 1 5 5 C 1.53002 * 109.47183 * 300.00146 * 4 3 2 6 6 C 1.52996 * 109.47216 * 179.97438 * 3 2 1 7 7 C 1.52997 * 109.47570 * 179.97438 * 6 3 2 8 8 C 1.53002 * 109.47070 * 60.00271 * 3 2 1 9 9 N 1.46898 * 109.47494 * 59.99654 * 8 3 2 10 10 C 1.46902 * 111.00116 * 179.97438 * 9 8 3 11 11 C 1.53350 * 109.40933 * 275.12361 * 10 9 8 12 12 C 1.53198 * 109.14641 * 178.68372 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45589 * 155.00226 * 10 9 8 24 24 H 1.09000 * 109.47134 * 59.99372 * 1 2 3 25 25 H 1.08997 * 109.46832 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47086 * 300.00103 * 1 2 3 27 27 H 1.08993 * 109.47167 * 240.00449 * 2 1 3 28 28 H 1.09004 * 109.46847 * 119.99744 * 2 1 3 29 29 H 1.09004 * 109.46991 * 60.00179 * 4 3 2 30 30 H 1.08994 * 109.47597 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.46649 * 300.00022 * 5 4 3 32 32 H 1.09006 * 109.46686 * 59.99433 * 5 4 3 33 33 H 1.09001 * 109.47061 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47338 * 300.00260 * 6 3 2 35 35 H 1.09003 * 109.46959 * 59.99833 * 6 3 2 36 36 H 1.09001 * 109.47013 * 300.00473 * 7 6 3 37 37 H 1.09003 * 109.47105 * 59.99936 * 7 6 3 38 38 H 1.08997 * 109.47581 * 180.02562 * 7 6 3 39 39 H 1.09004 * 109.47184 * 299.99735 * 8 3 2 40 40 H 1.09003 * 109.47136 * 179.97438 * 8 3 2 41 41 H 1.00901 * 110.99531 * 56.04819 * 9 8 3 42 42 H 1.08996 * 109.45634 * 35.03456 * 10 9 8 43 43 H 1.08996 * 109.68537 * 58.72137 * 11 10 9 44 44 H 1.09000 * 109.47180 * 298.52053 * 11 10 9 45 45 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 46 46 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 47 47 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 49 49 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 50 50 H 1.08996 * 109.49900 * 61.42361 * 23 10 9 51 51 H 1.08999 * 109.52516 * 301.34201 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 2.0400 1.4426 -2.4985 6 6 3.5700 1.4426 0.0006 7 6 4.0800 2.8850 0.0000 8 6 1.5300 2.1637 1.2493 9 7 2.0196 1.4713 2.4487 10 6 1.5491 2.1377 3.6704 11 6 2.5004 3.2879 4.0221 12 6 1.9862 3.9992 5.2777 13 7 1.8131 3.0082 6.3486 14 6 2.4060 3.1895 7.5695 15 1 3.3222 3.7562 7.6460 16 6 1.8293 2.6452 8.7088 17 7 0.5736 2.2514 8.6870 18 14 2.8355 2.4716 10.2731 19 1 2.6946 3.7026 11.0915 20 1 2.3473 1.3030 11.0486 21 1 4.2646 2.2710 9.9227 22 6 0.9919 1.8189 6.0844 23 6 1.5156 1.1289 4.8208 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 0.4400 2.1638 -1.2491 30 1 1.8929 3.1915 -1.2490 31 1 3.1300 1.4426 -2.4984 32 1 1.6767 0.4149 -2.4984 33 1 1.6763 1.9562 -3.3884 34 1 3.9330 0.9289 0.8908 35 1 3.9337 0.9286 -0.8891 36 1 3.7170 3.3984 -0.8904 37 1 3.7163 3.3994 0.8895 38 1 5.1700 2.8851 0.0000 39 1 0.4400 2.1637 1.2493 40 1 1.8937 3.1913 1.2495 41 1 3.0262 1.4012 2.4402 42 1 0.5471 2.5335 3.5051 43 1 2.5423 3.9959 3.1944 44 1 3.4973 2.8899 4.2119 45 1 1.0297 4.4752 5.0621 46 1 2.7074 4.7538 5.5913 47 1 0.1708 1.8707 9.4830 48 1 1.0590 1.1335 6.9293 49 1 -0.0462 2.1168 5.9371 50 1 2.5216 0.7512 5.0029 51 1 0.8575 0.3002 4.5595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611714346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = -7.606756 kcal Electronic energy + Delta-G solvation = -24106.488102 eV Core-core repulsion = 21040.157228 eV Total energy + Delta-G solvation = -3066.330874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.59084 -37.59556 -34.55745 -32.28230 -32.04297 -30.82993 -29.98311 -29.15688 -26.98923 -25.22905 -24.47858 -22.73982 -21.98492 -21.93611 -21.15612 -19.26963 -17.89107 -16.78937 -15.86728 -15.76435 -15.23884 -14.83087 -14.46507 -14.12366 -13.56296 -13.37359 -13.23300 -13.10743 -12.92643 -12.77452 -12.74107 -12.60745 -12.22238 -12.05603 -11.77328 -11.52108 -11.48938 -11.34454 -11.28119 -10.99959 -10.76803 -10.67583 -10.57209 -10.33361 -10.22114 -10.18111 -10.10973 -10.10321 -9.89293 -9.64563 -9.36718 -8.44299 -7.90610 -6.62169 -5.74976 -3.17104 3.39448 3.46405 3.49019 4.38225 4.52881 4.71444 4.77867 4.81961 5.07644 5.17481 5.28846 5.34395 5.37204 5.46367 5.47169 5.48946 5.55383 5.61191 5.64043 5.69415 5.74833 5.77803 5.82113 5.85819 5.95153 5.97740 6.00249 6.06780 6.10853 6.15050 6.21155 6.30329 6.31378 6.37103 6.46881 6.55414 6.59278 6.68412 6.71282 6.76495 6.91190 6.99704 7.42843 7.48940 7.72608 7.78108 7.83622 8.49793 9.25924 9.89532 10.46693 11.33540 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032290 B = 0.003593 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.933752 B = 7791.462594 C = 8169.148547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.053 4.053 4 C -0.117 4.117 5 C -0.153 4.153 6 C -0.117 4.117 7 C -0.157 4.157 8 C 0.066 3.934 9 N -0.683 5.683 10 C 0.097 3.903 11 C -0.158 4.158 12 C 0.150 3.850 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.063 0.937 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.171 3.829 23 C -0.123 4.123 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.335 0.665 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.015 0.985 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.016 0.984 50 H 0.051 0.949 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -2.197 -20.592 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.054 4.054 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.155 4.155 7 C -0.214 4.214 8 C -0.064 4.064 9 N -0.313 5.313 10 C -0.013 4.013 11 C -0.199 4.199 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.045 3.955 23 C -0.163 4.163 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.153 0.847 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.112 -2.737 -20.445 20.735 hybrid contribution 1.003 0.798 0.844 1.535 sum 3.115 -1.939 -19.601 19.941 Atomic orbital electron populations 1.21829 0.96326 1.01040 1.01670 1.21457 0.95706 0.95335 1.01694 1.20600 0.94739 0.95967 0.94046 1.21621 1.00700 0.99158 0.94042 1.21853 1.01250 1.00752 0.97170 1.21618 0.94915 0.96972 1.01964 1.21900 1.00432 0.97109 1.01983 1.22057 0.99908 0.94917 0.89479 1.60773 1.16031 1.53316 1.01217 1.21558 0.97468 0.93133 0.89110 1.22730 0.99847 0.98400 0.98945 1.20801 0.97209 0.91614 0.88144 1.44057 1.58772 1.19012 1.09659 1.19162 1.02873 1.32455 0.83674 0.91899 1.25036 0.95130 1.02060 0.97421 1.70034 1.10428 1.45758 1.28474 0.86323 0.79820 0.77386 0.83400 1.21458 1.21546 1.20526 1.20793 0.91783 0.88932 0.94019 1.22151 1.01053 0.97302 0.95821 0.93330 0.93492 0.91999 0.92943 0.90718 0.91827 0.92074 0.92584 0.92417 0.93351 0.91634 0.91954 0.92638 0.92508 0.93148 0.91259 0.95419 0.84653 0.91613 0.93758 0.92419 0.96754 0.93142 0.93679 0.89510 0.96630 0.93007 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.21 37.16 0.34 -1.22 16 2 C -0.10 -1.07 4.48 -26.73 -0.12 -1.19 16 3 C -0.05 -0.52 0.17 -154.51 -0.03 -0.55 16 4 C -0.12 -1.05 4.28 -26.73 -0.11 -1.16 16 5 C -0.15 -1.21 9.21 37.16 0.34 -0.87 16 6 C -0.12 -1.12 4.31 -26.73 -0.12 -1.24 16 7 C -0.16 -1.49 9.21 37.16 0.34 -1.14 16 8 C 0.07 0.79 3.74 -3.82 -0.01 0.78 16 9 N -0.68 -9.48 5.46 -106.51 -0.58 -10.07 16 10 C 0.10 1.64 2.43 -67.51 -0.16 1.48 16 11 C -0.16 -2.78 5.36 -26.45 -0.14 -2.92 16 12 C 0.15 3.21 6.50 -3.71 -0.02 3.18 16 13 N -0.59 -15.10 2.99 -172.32 -0.52 -15.61 16 14 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 15 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 18 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 23 C -0.12 -2.43 5.69 -26.61 -0.15 -2.58 16 24 H 0.05 0.45 6.43 -51.93 -0.33 0.12 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 27 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.07 0.89 7.60 -51.93 -0.39 0.49 16 29 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 30 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 32 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 35 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 37 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.89 6.34 -51.93 -0.33 0.56 16 40 H 0.03 0.35 5.70 -51.93 -0.30 0.05 16 41 H 0.33 4.57 6.52 -39.29 -0.26 4.32 16 42 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 43 H 0.04 0.69 7.43 -51.93 -0.39 0.30 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -28.32 362.53 -9.54 -37.86 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.40 Total: 1.88 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.09 Total: -10.51 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.48 Total: -51.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.32 -9.54 -37.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611714346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.250 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds