Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00092 * 2 1 4 4 C 1.53000 * 109.47018 * 210.00214 * 3 2 1 5 5 C 1.53001 * 109.46939 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46822 * 59.99881 * 5 4 3 7 7 N 1.46902 * 109.46717 * 180.02562 * 6 5 4 8 8 C 1.46907 * 110.99976 * 274.01710 * 7 6 5 9 9 C 1.53035 * 109.45986 * 272.37635 * 8 7 6 10 10 C 1.53196 * 109.31062 * 178.60087 * 9 8 7 11 11 N 1.46922 * 108.76582 * 54.65328 * 10 9 8 12 12 C 1.36940 * 120.62969 * 126.40482 * 11 10 9 13 13 H 1.08006 * 119.99884 * 331.35707 * 12 11 10 14 14 C 1.38814 * 120.00035 * 151.36455 * 12 11 10 15 15 N 1.31618 * 119.99780 * 345.16401 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 165.17145 * 14 12 11 17 17 H 1.48495 * 109.47366 * 89.99630 * 16 14 12 18 18 H 1.48502 * 109.46585 * 209.99696 * 16 14 12 19 19 H 1.48496 * 109.47223 * 329.99376 * 16 14 12 20 20 C 1.46926 * 118.74224 * 306.38575 * 11 10 9 21 21 C 1.53039 * 109.45811 * 152.32127 * 8 7 6 22 22 C 1.52995 * 109.47170 * 299.99644 * 6 5 4 23 23 C 1.52998 * 109.47116 * 89.99961 * 3 2 1 24 24 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46864 * 299.99964 * 1 2 3 26 26 H 1.09000 * 109.47148 * 60.00188 * 1 2 3 27 27 H 1.09003 * 109.47062 * 330.00246 * 3 2 1 28 28 H 1.09005 * 109.47161 * 60.00274 * 4 3 2 29 29 H 1.08995 * 109.47051 * 299.99697 * 4 3 2 30 30 H 1.08999 * 109.47131 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47270 * 300.00110 * 5 4 3 32 32 H 1.08998 * 109.46608 * 60.00280 * 6 5 4 33 33 H 1.00901 * 111.00023 * 150.06785 * 7 6 5 34 34 H 1.09002 * 109.45444 * 32.34967 * 8 7 6 35 35 H 1.08997 * 109.49778 * 298.56434 * 9 8 7 36 36 H 1.09002 * 109.50071 * 58.66244 * 9 8 7 37 37 H 1.08994 * 109.59834 * 294.86721 * 10 9 8 38 38 H 1.09007 * 109.70229 * 174.50385 * 10 9 8 39 39 H 0.97001 * 119.99809 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.58361 * 293.82308 * 20 11 10 41 41 H 1.08996 * 109.59249 * 173.39312 * 20 11 10 42 42 H 1.09004 * 109.49414 * 301.33315 * 21 8 7 43 43 H 1.08997 * 109.49863 * 61.40069 * 21 8 7 44 44 H 1.08995 * 109.47323 * 300.00358 * 22 6 5 45 45 H 1.09005 * 109.46870 * 179.97438 * 22 6 5 46 46 H 1.08999 * 109.47368 * 300.00256 * 23 3 2 47 47 H 1.09003 * 109.46923 * 60.00200 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9809 2.6611 -0.7218 6 6 4.1883 3.1275 0.7206 7 7 4.7849 4.4699 0.7200 8 6 6.2490 4.3953 0.6237 9 6 6.8464 4.2691 2.0269 10 6 8.3705 4.1564 1.9204 11 7 8.8763 5.3006 1.1500 12 6 9.8625 6.1031 1.6589 13 1 9.9620 6.2248 2.7274 14 6 10.7340 6.7603 0.8013 15 7 10.8117 6.3988 -0.4619 16 14 11.7967 8.1574 1.4401 17 1 13.0870 7.6124 1.9333 18 1 12.0548 9.1244 0.3431 19 1 11.0931 8.8462 2.5517 20 6 8.3045 5.5674 -0.1768 21 6 6.7811 5.6639 -0.0467 22 6 2.8396 3.1698 1.4418 23 6 2.2177 1.7714 1.4425 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3450 1.9994 -0.5138 28 1 3.2111 0.9313 -1.7490 29 1 4.0241 0.5694 -0.2075 30 1 4.9415 2.6311 -1.2361 31 1 3.3155 3.3547 -1.2359 32 1 4.8537 2.4339 1.2345 33 1 4.5024 4.9915 1.5362 34 1 6.5298 3.5255 0.0298 35 1 6.5867 5.1503 2.6135 36 1 6.4490 3.3780 2.5129 37 1 8.6339 3.2288 1.4123 38 1 8.8102 4.1643 2.9178 39 1 11.4205 6.8583 -1.0613 40 1 8.5624 4.7547 -0.8559 41 1 8.6985 6.5076 -0.5624 42 1 6.3372 5.7656 -1.0371 43 1 6.5215 6.5319 0.5593 44 1 2.1743 3.8633 0.9277 45 1 2.9875 3.5017 2.4695 46 1 1.2569 1.8014 1.9563 47 1 2.8830 1.0774 1.9563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612401428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = -45.186843 kcal Electronic energy + Delta-G solvation = -23172.877177 eV Core-core repulsion = 19969.083613 eV Total energy + Delta-G solvation = -3203.793564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.62167 -38.09238 -36.60421 -34.19309 -31.94811 -30.99276 -30.14230 -29.50580 -27.75625 -26.29159 -24.43598 -22.95768 -22.17067 -21.83034 -20.94657 -19.97694 -19.08470 -16.87625 -16.77596 -15.92879 -15.38483 -15.29016 -15.00658 -14.52276 -14.18084 -13.74952 -13.62035 -13.45034 -13.28526 -12.96506 -12.74927 -12.52560 -12.44125 -12.17824 -11.84780 -11.51778 -11.25533 -11.23582 -11.13125 -10.89622 -10.85604 -10.69716 -10.64186 -10.41155 -10.18027 -10.15661 -9.91611 -9.68500 -9.61582 -9.40778 -8.45897 -8.01808 -6.61955 -5.75017 -3.18812 3.39054 3.45801 3.48153 3.49534 4.33167 4.52077 4.53284 4.55840 4.90652 5.00289 5.05992 5.12185 5.16916 5.28314 5.33001 5.37013 5.38502 5.40910 5.46133 5.56604 5.58611 5.67850 5.73438 5.82682 5.93459 5.94332 6.02861 6.09222 6.13495 6.21514 6.31457 6.37100 6.55053 6.67023 6.70055 6.75191 6.89882 6.98786 6.99235 7.41675 7.45656 7.70590 7.75447 7.82914 8.49965 9.25725 9.88738 10.45851 11.33287 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049385 B = 0.003038 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.837514 B = 9214.336727 C = 9367.524978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.090 3.910 4 C -0.115 4.115 5 C -0.103 4.103 6 C 0.086 3.914 7 N -0.685 5.685 8 C 0.096 3.904 9 C -0.158 4.158 10 C 0.149 3.851 11 N -0.593 5.593 12 C -0.251 4.251 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.170 3.830 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.136 4.136 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.337 0.663 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.015 0.985 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.681 -9.216 1.155 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.024 4.024 7 N -0.315 5.315 8 C -0.013 4.013 9 C -0.199 4.199 10 C 0.022 3.978 11 N -0.316 5.316 12 C -0.381 4.381 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.549 5.549 16 Si 0.733 3.267 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.044 3.956 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.175 4.175 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.542 -9.205 0.347 21.604 hybrid contribution 0.573 0.589 1.250 1.496 sum -18.968 -8.616 1.596 20.894 Atomic orbital electron populations 1.22761 0.81452 1.02496 0.99835 1.87914 1.19351 1.28327 1.95081 1.22211 0.95121 0.83974 0.95491 1.21601 0.94988 0.98162 1.00601 1.21492 1.01337 0.94563 0.96768 1.21516 0.94308 0.90962 0.95629 1.60758 1.09563 1.14616 1.46525 1.21564 0.84784 0.99380 0.95592 1.22682 0.99876 0.99995 0.97374 1.20810 0.90547 0.90632 0.95796 1.44066 1.41720 1.28734 1.17033 1.19175 1.06291 1.20973 0.91627 0.91881 1.25069 0.97473 1.00856 0.96313 1.70011 1.39049 1.41462 1.04357 0.86294 0.80408 0.82200 0.77845 1.21437 1.21551 1.20543 1.20826 0.87067 1.01357 0.86339 1.22176 0.99290 0.95918 0.99013 1.21679 0.96888 0.96506 1.00492 1.21988 1.01159 0.97164 0.97171 0.89853 0.94214 0.94136 0.92161 0.91289 0.91216 0.91152 0.91315 0.93730 0.84534 0.91417 0.92299 0.93761 0.96696 0.93041 0.93653 0.96642 0.89241 0.92855 0.92944 0.91151 0.91780 0.91971 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.39 -4.16 10.35 -35.23 -0.36 -4.52 16 3 C 0.09 0.89 2.61 -26.73 -0.07 0.82 16 4 C -0.12 -1.22 5.57 -26.73 -0.15 -1.37 16 5 C -0.10 -1.20 5.42 -26.73 -0.14 -1.34 16 6 C 0.09 1.03 2.30 -67.71 -0.16 0.88 16 7 N -0.68 -9.60 6.07 -99.69 -0.61 -10.20 16 8 C 0.10 1.63 2.23 -67.67 -0.15 1.48 16 9 C -0.16 -2.77 5.31 -26.61 -0.14 -2.91 16 10 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 11 N -0.59 -15.07 2.99 -172.32 -0.52 -15.59 16 12 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 13 H 0.06 1.72 7.87 -52.48 -0.41 1.31 16 14 C 0.00 0.03 4.97 -17.43 -0.09 -0.05 16 15 N -0.90 -26.52 11.10 55.49 0.62 -25.90 16 16 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 C 0.17 4.13 5.29 -3.71 -0.02 4.11 16 21 C -0.12 -2.44 5.69 -26.61 -0.15 -2.59 16 22 C -0.12 -1.17 5.18 -26.71 -0.14 -1.31 16 23 C -0.14 -1.30 5.54 -26.71 -0.15 -1.44 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 26 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.91 7.54 -51.93 -0.39 0.52 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.59 7.31 -51.93 -0.38 0.21 16 33 H 0.34 4.51 8.04 -39.29 -0.32 4.19 16 34 H 0.07 1.21 7.19 -51.93 -0.37 0.84 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.69 7.63 -51.93 -0.40 0.29 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.43 6.02 -51.93 -0.31 2.12 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 46 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.48 355.58 -9.81 -39.29 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.84 Total: 1.07 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.43 Total: -6.37 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.51 Total: -51.69 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.36 Total: -4.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.48 -9.81 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612401428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.894 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds