Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00092 * 2 1 4 4 C 1.53000 * 109.47018 * 210.00214 * 3 2 1 5 5 C 1.53001 * 109.46939 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46822 * 59.99881 * 5 4 3 7 7 N 1.46902 * 109.46717 * 180.02562 * 6 5 4 8 8 C 1.46907 * 110.99976 * 274.01710 * 7 6 5 9 9 C 1.53035 * 109.45986 * 272.37635 * 8 7 6 10 10 C 1.53196 * 109.31062 * 178.60087 * 9 8 7 11 11 N 1.46922 * 108.76582 * 54.65328 * 10 9 8 12 12 C 1.36940 * 120.62969 * 126.40482 * 11 10 9 13 13 H 1.08006 * 119.99884 * 331.35707 * 12 11 10 14 14 C 1.38814 * 120.00035 * 151.36455 * 12 11 10 15 15 N 1.31618 * 119.99780 * 345.16401 * 14 12 11 16 16 Si 1.86802 * 119.99991 * 165.17145 * 14 12 11 17 17 H 1.48495 * 109.47366 * 89.99630 * 16 14 12 18 18 H 1.48502 * 109.46585 * 209.99696 * 16 14 12 19 19 H 1.48496 * 109.47223 * 329.99376 * 16 14 12 20 20 C 1.46926 * 118.74224 * 306.38575 * 11 10 9 21 21 C 1.53039 * 109.45811 * 152.32127 * 8 7 6 22 22 C 1.52995 * 109.47170 * 299.99644 * 6 5 4 23 23 C 1.52998 * 109.47116 * 89.99961 * 3 2 1 24 24 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46864 * 299.99964 * 1 2 3 26 26 H 1.09000 * 109.47148 * 60.00188 * 1 2 3 27 27 H 1.09003 * 109.47062 * 330.00246 * 3 2 1 28 28 H 1.09005 * 109.47161 * 60.00274 * 4 3 2 29 29 H 1.08995 * 109.47051 * 299.99697 * 4 3 2 30 30 H 1.08999 * 109.47131 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47270 * 300.00110 * 5 4 3 32 32 H 1.08998 * 109.46608 * 60.00280 * 6 5 4 33 33 H 1.00901 * 111.00023 * 150.06785 * 7 6 5 34 34 H 1.09002 * 109.45444 * 32.34967 * 8 7 6 35 35 H 1.08997 * 109.49778 * 298.56434 * 9 8 7 36 36 H 1.09002 * 109.50071 * 58.66244 * 9 8 7 37 37 H 1.08994 * 109.59834 * 294.86721 * 10 9 8 38 38 H 1.09007 * 109.70229 * 174.50385 * 10 9 8 39 39 H 0.97001 * 119.99809 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.58361 * 293.82308 * 20 11 10 41 41 H 1.08996 * 109.59249 * 173.39312 * 20 11 10 42 42 H 1.09004 * 109.49414 * 301.33315 * 21 8 7 43 43 H 1.08997 * 109.49863 * 61.40069 * 21 8 7 44 44 H 1.08995 * 109.47323 * 300.00358 * 22 6 5 45 45 H 1.09005 * 109.46870 * 179.97438 * 22 6 5 46 46 H 1.08999 * 109.47368 * 300.00256 * 23 3 2 47 47 H 1.09003 * 109.46923 * 60.00200 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9809 2.6611 -0.7218 6 6 4.1883 3.1275 0.7206 7 7 4.7849 4.4699 0.7200 8 6 6.2490 4.3953 0.6237 9 6 6.8464 4.2691 2.0269 10 6 8.3705 4.1564 1.9204 11 7 8.8763 5.3006 1.1500 12 6 9.8625 6.1031 1.6589 13 1 9.9620 6.2248 2.7274 14 6 10.7340 6.7603 0.8013 15 7 10.8117 6.3988 -0.4619 16 14 11.7967 8.1574 1.4401 17 1 13.0870 7.6124 1.9333 18 1 12.0548 9.1244 0.3431 19 1 11.0931 8.8462 2.5517 20 6 8.3045 5.5674 -0.1768 21 6 6.7811 5.6639 -0.0467 22 6 2.8396 3.1698 1.4418 23 6 2.2177 1.7714 1.4425 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.3450 1.9994 -0.5138 28 1 3.2111 0.9313 -1.7490 29 1 4.0241 0.5694 -0.2075 30 1 4.9415 2.6311 -1.2361 31 1 3.3155 3.3547 -1.2359 32 1 4.8537 2.4339 1.2345 33 1 4.5024 4.9915 1.5362 34 1 6.5298 3.5255 0.0298 35 1 6.5867 5.1503 2.6135 36 1 6.4490 3.3780 2.5129 37 1 8.6339 3.2288 1.4123 38 1 8.8102 4.1643 2.9178 39 1 11.4205 6.8583 -1.0613 40 1 8.5624 4.7547 -0.8559 41 1 8.6985 6.5076 -0.5624 42 1 6.3372 5.7656 -1.0371 43 1 6.5215 6.5319 0.5593 44 1 2.1743 3.8633 0.9277 45 1 2.9875 3.5017 2.4695 46 1 1.2569 1.8014 1.9563 47 1 2.8830 1.0774 1.9563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612401428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = -63.291874 kcal Electronic energy + Delta-G solvation = -23173.662270 eV Core-core repulsion = 19969.083613 eV Total energy + Delta-G solvation = -3204.578657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55255 -39.40618 -37.76024 -35.67019 -33.65533 -31.94371 -31.67142 -31.10744 -28.86267 -27.18344 -26.16624 -23.97841 -23.69460 -23.20859 -22.16348 -20.99709 -20.60874 -18.74780 -17.58047 -16.94237 -16.77265 -16.34202 -16.15676 -15.96493 -15.38090 -15.27586 -14.93489 -14.80343 -14.56752 -14.36503 -14.12339 -13.79937 -13.39203 -13.20255 -13.01322 -12.98201 -12.69122 -12.60370 -12.52251 -12.21545 -12.06901 -12.05425 -11.94937 -11.87451 -11.68044 -11.62091 -11.31941 -11.23202 -11.07510 -10.54873 -10.36833 -9.24192 -8.67596 -7.87117 -5.34441 1.46223 1.47551 1.57458 2.50937 2.78935 3.19918 3.31378 3.69577 3.71670 3.76575 3.97783 4.13656 4.18020 4.23396 4.30405 4.39956 4.41006 4.50255 4.53490 4.54427 4.56171 4.59317 4.68840 4.73731 4.82346 4.86778 4.89245 4.98179 5.04940 5.08817 5.10925 5.18014 5.22591 5.23533 5.30042 5.32756 5.37200 5.44729 5.53335 5.64704 5.76128 6.21090 6.32161 6.40227 6.59167 7.15093 7.85970 8.37998 9.19190 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049385 B = 0.003038 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.837514 B = 9214.336727 C = 9367.524978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.090 3.910 4 C -0.112 4.112 5 C -0.099 4.099 6 C 0.086 3.914 7 N -0.680 5.680 8 C 0.109 3.891 9 C -0.143 4.143 10 C 0.144 3.856 11 N -0.611 5.611 12 C -0.264 4.264 13 H 0.065 0.935 14 C -0.053 4.053 15 N -0.937 5.937 16 Si 0.969 3.031 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.270 1.270 20 C 0.178 3.822 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.131 4.131 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.345 0.655 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.009 0.991 38 H 0.052 0.948 39 H 0.250 0.750 40 H -0.008 1.008 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.789 -9.293 2.366 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.033 3.967 4 C -0.150 4.150 5 C -0.137 4.137 6 C -0.023 4.023 7 N -0.310 5.310 8 C -0.001 4.001 9 C -0.184 4.184 10 C 0.018 3.982 11 N -0.334 5.334 12 C -0.394 4.394 13 H 0.083 0.917 14 C -0.248 4.248 15 N -0.583 5.583 16 Si 0.797 3.203 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.195 1.195 20 C 0.052 3.948 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.170 4.170 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.685 -9.300 1.582 23.648 hybrid contribution 1.203 0.530 0.860 1.571 sum -20.482 -8.770 2.442 22.414 Atomic orbital electron populations 1.22953 0.79852 1.03620 1.00734 1.87881 1.21187 1.28688 1.95224 1.22191 0.94686 0.84116 0.95719 1.21539 0.95457 0.97132 1.00879 1.21426 1.00580 0.95323 0.96401 1.21566 0.95276 0.89399 0.96070 1.60633 1.07236 1.16047 1.47098 1.21260 0.86748 0.97301 0.94811 1.22508 0.96699 1.01261 0.97899 1.20972 0.93211 0.88992 0.95049 1.44326 1.41759 1.29876 1.17486 1.19516 1.06650 1.21331 0.91897 0.91689 1.25858 0.99077 1.03271 0.96561 1.70177 1.39958 1.42627 1.05512 0.85251 0.78662 0.79095 0.77283 1.21090 1.21781 1.19489 1.20606 0.90035 0.98565 0.85633 1.21927 0.95801 0.97286 0.99892 1.21608 0.95446 0.97023 1.00669 1.21938 1.01622 0.96478 0.96935 0.88757 0.93220 0.93288 0.91187 0.91061 0.92158 0.92921 0.91007 0.94618 0.83642 0.92303 0.92279 0.91040 0.97269 0.92977 0.94080 0.99010 0.92677 0.91947 0.93342 0.90463 0.90925 0.90517 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.02 10.35 -148.98 -1.54 -9.56 16 3 C 0.09 1.59 2.61 30.59 0.08 1.67 16 4 C -0.11 -2.22 5.57 30.59 0.17 -2.05 16 5 C -0.10 -2.17 5.42 30.60 0.17 -2.00 16 6 C 0.09 1.90 2.30 44.92 0.10 2.00 16 7 N -0.68 -17.57 6.07 -469.32 -2.85 -20.42 16 8 C 0.11 3.56 2.23 44.94 0.10 3.66 16 9 C -0.14 -4.76 5.31 30.67 0.16 -4.60 16 10 C 0.14 6.11 6.52 86.36 0.56 6.67 16 11 N -0.61 -31.53 2.99 -699.08 -2.09 -33.62 16 12 C -0.26 -14.84 9.59 84.03 0.81 -14.03 16 13 H 0.07 3.55 7.87 -2.91 -0.02 3.53 16 14 C -0.05 -2.99 4.97 84.86 0.42 -2.57 16 15 N -0.94 -56.54 11.10 21.65 0.24 -56.30 16 16 Si 0.97 45.51 29.58 68.60 2.03 47.54 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.18 8.88 5.29 86.36 0.46 9.33 16 21 C -0.11 -4.27 5.69 30.67 0.17 -4.10 16 22 C -0.11 -1.85 5.18 30.61 0.16 -1.69 16 23 C -0.13 -2.15 5.54 30.61 0.17 -1.98 16 24 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.05 0.52 7.87 -2.39 -0.02 0.50 16 26 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.07 1.10 7.79 -2.39 -0.02 1.08 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.33 7.54 -2.39 -0.02 1.32 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 0.87 7.31 -2.39 -0.02 0.85 16 33 H 0.34 8.20 8.04 -89.69 -0.72 7.48 16 34 H 0.06 2.07 7.19 -2.39 -0.02 2.05 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.02 7.63 -2.39 -0.02 2.00 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.05 2.17 7.93 -2.38 -0.02 2.15 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.05 3.12 6.02 -2.39 -0.01 3.10 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.29 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.14 8.12 -2.38 -0.02 1.12 16 46 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.98 355.58 0.74 -63.24 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.19 Total: 17.27 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.76 Total: -8.15 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.70 Total: -110.34 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.54 Total: -9.56 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -63.98 0.74 -63.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612401428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.053 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds