Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46940 * 2 1 4 4 C 1.53006 * 109.47176 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47283 * 175.89334 * 4 3 2 6 6 H 1.09004 * 109.47530 * 53.73355 * 5 4 3 7 7 C 1.53004 * 109.46788 * 293.73495 * 5 4 3 8 8 C 1.53004 * 109.46877 * 173.40286 * 7 5 4 9 9 C 1.53004 * 109.47170 * 173.74152 * 5 4 3 10 10 N 1.46900 * 109.46867 * 186.92838 * 9 5 4 11 11 C 1.46956 * 110.99775 * 199.72322 * 10 9 5 12 12 C 1.53050 * 109.36650 * 176.80900 * 11 10 9 13 13 N 1.46953 * 109.36226 * 58.40320 * 12 11 10 14 14 C 1.46900 * 111.00226 * 176.81409 * 13 12 11 15 15 C 1.50707 * 109.46991 * 293.79872 * 14 13 12 16 16 H 1.08002 * 119.99669 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00276 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00187 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46931 * 89.99946 * 19 17 15 21 21 H 1.48501 * 109.47121 * 209.99925 * 19 17 15 22 22 H 1.48501 * 109.47290 * 330.00227 * 19 17 15 23 23 C 1.46966 * 110.87938 * 300.67946 * 13 12 11 24 24 C 1.46953 * 111.00226 * 75.92563 * 10 9 5 25 25 H 1.09004 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47189 * 299.99690 * 1 2 3 27 27 H 1.08996 * 109.47658 * 60.00143 * 1 2 3 28 28 H 1.09003 * 109.47189 * 240.00310 * 2 1 3 29 29 H 1.08993 * 109.47576 * 120.00395 * 2 1 3 30 30 H 1.09003 * 109.47604 * 300.00043 * 3 2 1 31 31 H 1.08998 * 109.47201 * 60.00496 * 3 2 1 32 32 H 1.09003 * 109.46652 * 295.89313 * 4 3 2 33 33 H 1.08998 * 109.46890 * 55.88590 * 4 3 2 34 34 H 1.08993 * 109.47295 * 293.40365 * 7 5 4 35 35 H 1.09001 * 109.46892 * 53.40925 * 7 5 4 36 36 H 1.09005 * 109.47269 * 307.78078 * 8 7 5 37 37 H 1.09001 * 109.46895 * 67.78336 * 8 7 5 38 38 H 1.09003 * 109.47184 * 187.77924 * 8 7 5 39 39 H 1.08996 * 109.46451 * 306.92253 * 9 5 4 40 40 H 1.08995 * 109.47024 * 66.92271 * 9 5 4 41 41 H 1.08998 * 109.48900 * 296.77867 * 11 10 9 42 42 H 1.09005 * 109.48651 * 56.84261 * 11 10 9 43 43 H 1.08998 * 109.48773 * 298.43621 * 12 11 10 44 44 H 1.09003 * 109.50667 * 178.37815 * 12 11 10 45 45 H 1.08997 * 109.47260 * 53.79644 * 14 13 12 46 46 H 1.08997 * 109.47263 * 173.80154 * 14 13 12 47 47 H 0.97001 * 119.99899 * 180.02562 * 18 17 15 48 48 H 1.08995 * 109.48383 * 299.35417 * 23 13 12 49 49 H 1.09005 * 109.48700 * 179.28936 * 23 13 12 50 50 H 1.09002 * 109.49099 * 303.15284 * 24 10 9 51 51 H 1.08998 * 109.49047 * 63.22059 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8813 -0.1039 6 1 3.6282 3.4844 0.6837 7 6 3.7019 3.4595 -1.4691 8 6 4.0646 4.9453 -1.5118 9 6 5.6019 2.8954 0.0521 10 7 6.0743 4.2848 0.1192 11 6 7.5066 4.3699 -0.1985 12 6 7.9407 5.8375 -0.1958 13 7 7.6605 6.4261 1.1213 14 6 8.1329 7.8154 1.1884 15 6 9.6373 7.8392 1.1014 16 1 10.1873 6.9146 1.0063 17 6 10.3113 9.0412 1.1433 18 7 9.6414 10.1671 1.2587 19 14 12.1760 9.0706 1.0363 20 1 12.5885 9.1727 -0.3866 21 1 12.6966 10.2408 1.7879 22 1 12.7253 7.8216 1.6225 23 6 6.2281 6.3409 1.4390 24 6 5.7941 4.8733 1.4362 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9336 0.9936 0.9237 33 1 3.9329 0.8663 -0.8517 34 1 4.2459 2.9301 -2.2512 35 1 2.6300 3.3425 -1.6291 36 1 3.6311 5.4501 -0.6484 37 1 5.1488 5.0554 -1.4906 38 1 3.6723 5.3890 -2.4269 39 1 5.8780 2.3732 0.9680 40 1 6.0593 2.3969 -0.8025 41 1 8.0782 3.8202 0.5492 42 1 7.6868 3.9392 -1.1835 43 1 7.3885 6.3815 -0.9621 44 1 9.0090 5.9015 -0.4028 45 1 7.7120 8.3828 0.3583 46 1 7.8164 8.2617 2.1311 47 1 10.1156 11.0128 1.2878 48 1 5.6566 6.8906 0.6912 49 1 6.0479 6.7717 2.4240 50 1 4.7258 4.8097 1.6432 51 1 6.3463 4.3294 2.2026 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612823089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -20.925277 kcal Electronic energy + Delta-G solvation = -23290.099785 eV Core-core repulsion = 20223.191376 eV Total energy + Delta-G solvation = -3066.908409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.23523 -37.33522 -35.25132 -33.69048 -32.30218 -30.57104 -30.39694 -28.79193 -26.89083 -25.09603 -23.17421 -22.91358 -22.77954 -21.44439 -21.06148 -19.71749 -19.12222 -16.28854 -15.88101 -15.78786 -15.42324 -14.68827 -14.59871 -14.21042 -13.93212 -13.86747 -13.82314 -13.63040 -13.18143 -12.93564 -12.74156 -12.40776 -12.12838 -12.02855 -11.79578 -11.52038 -11.42949 -11.26324 -11.15920 -11.02308 -10.89771 -10.80762 -10.73073 -10.62890 -10.54569 -10.53134 -10.29485 -10.19233 -10.04678 -9.65882 -9.13986 -8.42245 -7.87130 -7.18235 -6.00899 -4.02234 3.32485 3.38640 3.42924 4.06469 4.43774 4.59982 4.66214 4.79674 4.85220 4.99157 5.03622 5.16661 5.24928 5.34476 5.39102 5.46987 5.50037 5.51418 5.55024 5.62313 5.66888 5.68760 5.76501 5.81108 5.83504 5.86725 5.88970 5.96149 5.99470 6.00545 6.07785 6.11041 6.23292 6.26262 6.30832 6.34905 6.47666 6.54733 6.64212 6.72378 6.98286 7.24326 7.33126 7.39110 7.42968 7.82329 8.12258 8.24457 8.58317 9.05405 9.61888 11.09944 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.043437 B = 0.002831 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.460966 B = 9888.399545 C = 9996.603377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.083 4.083 6 H 0.070 0.930 7 C -0.105 4.105 8 C -0.152 4.152 9 C 0.060 3.940 10 N -0.529 5.529 11 C 0.056 3.944 12 C 0.068 3.932 13 N -0.539 5.539 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.057 3.943 24 C 0.061 3.939 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.084 0.916 45 H -0.009 1.009 46 H 0.029 0.971 47 H 0.261 0.739 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 -18.063 -3.727 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.102 4.102 6 H 0.088 0.912 7 C -0.142 4.142 8 C -0.210 4.210 9 C -0.069 4.069 10 N -0.253 5.253 11 C -0.072 4.072 12 C -0.061 4.061 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.879 -17.853 -3.700 23.533 hybrid contribution 0.951 0.184 0.011 0.969 sum -13.928 -17.669 -3.689 22.799 Atomic orbital electron populations 1.21781 0.96097 1.01372 1.01799 1.21542 0.95678 0.97261 1.01805 1.21669 0.95535 0.96360 1.02238 1.21617 0.95302 0.96687 1.01671 1.21223 0.94943 0.95442 0.98597 0.91157 1.21452 0.99607 0.97288 0.95863 1.22003 1.05313 0.94414 0.99237 1.22151 0.95131 0.89382 1.00189 1.62373 1.16722 1.16964 1.29242 1.22268 0.87072 0.98145 0.99734 1.21980 1.01298 0.92043 0.90734 1.62276 1.12970 1.23186 1.27955 1.19690 0.95596 0.81583 0.96249 1.21155 0.91264 0.92570 1.49477 0.91973 1.24996 0.98605 0.95568 0.95523 1.69966 1.35512 0.97563 1.50779 0.86506 0.85432 0.77561 0.77963 1.20749 1.21287 1.19832 1.22055 0.90480 0.94376 1.00294 1.22179 0.99568 0.95783 0.89204 0.93000 0.92809 0.92794 0.92197 0.92245 0.91623 0.92176 0.92303 0.92122 0.92941 0.93141 0.93740 0.88663 0.95160 0.95041 0.91348 0.94505 0.91299 0.95367 0.89736 0.99102 0.95317 0.92960 0.95156 0.91301 0.91303 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.96 5.09 -26.73 -0.14 -1.09 16 4 C -0.11 -0.98 4.67 -26.73 -0.12 -1.11 16 5 C -0.08 -0.85 2.03 -90.62 -0.18 -1.03 16 6 H 0.07 0.78 6.67 -51.93 -0.35 0.44 16 7 C -0.10 -1.11 5.30 -26.73 -0.14 -1.25 16 8 C -0.15 -1.93 8.99 37.16 0.33 -1.60 16 9 C 0.06 0.69 4.36 -3.82 -0.02 0.67 16 10 N -0.53 -7.45 1.32 -234.47 -0.31 -7.76 16 11 C 0.06 0.87 5.56 -3.77 -0.02 0.85 16 12 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 13 N -0.54 -11.76 4.70 -235.91 -1.11 -12.87 16 14 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 15 C -0.51 -14.29 8.47 -34.44 -0.29 -14.58 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 24 C 0.06 0.91 5.43 -3.77 -0.02 0.89 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 6.31 -51.93 -0.33 0.21 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.05 0.50 6.26 -51.93 -0.33 0.17 16 36 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 37 H 0.09 1.39 5.76 -51.93 -0.30 1.09 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 40 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.78 6.79 -51.93 -0.35 1.42 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 50 H 0.07 0.92 6.70 -51.93 -0.35 0.57 16 51 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -28.88 381.13 -10.85 -39.74 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -10.34 Total: -4.36 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.55 Total: -11.05 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.68 Total: -46.80 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.88 -10.85 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612823089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds